mRNA_S-dermatodea_contig94331.17463.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig94331.17463.1
Unique NamemRNA_S-dermatodea_contig94331.17463.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig94331.17463.1 vs. uniprot
Match: D7FRZ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRZ6_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 4.750e-14
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    1 VSQLSFPVFVMALMSFVGWILFVFFGGLGLVGIPIDSIR 117
            V QLSFPVFVMALMSFVGWILFVFFGGLGLVGIPIDSIR
Sbjct:  128 VLQLSFPVFVMALMSFVGWILFVFFGGLGLVGIPIDSIR 166
[Close]
BLAST of mRNA_S-dermatodea_contig94331.17463.1 vs. uniprot
Match: A0A1R2BB86_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BB86_9CILI)

HSP 1 Score: 51.2 bits (121), Expect = 4.950e-6
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 VSQLSFPVFVMALMSFVGWILFVFFGGLGLVGIPIDSIRVRRMARRR 141
            V  ++FP++VMALMSFVGW L  +FGG+GL  IP+D I   R+  +R
Sbjct:  171 VIPVTFPIYVMALMSFVGWFLLSWFGGIGLGAIPLDFINKYRLRPQR 217
[Close]
BLAST of mRNA_S-dermatodea_contig94331.17463.1 vs. uniprot
Match: A0A7S1XYX2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYX2_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 4.460e-5
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    7 QLSFPVFVMALMSFVGWILFVFFGGLGLVGIPIDSI-----RVRRMARRRNR 147
             +SFPV++MALM+FVG+  FV FGG+GL  +PID I     R +R+ ++R R
Sbjct:  278 NVSFPVYLMALMAFVGYWFFVLFGGIGLAALPIDLILGYVYRPKRIDQKRFR 329
[Close]
BLAST of mRNA_S-dermatodea_contig94331.17463.1 vs. uniprot
Match: A0A059LHM2_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LHM2_9CHLO)

HSP 1 Score: 48.1 bits (113), Expect = 6.050e-5
Identity = 21/37 (56.76%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    7 QLSFPVFVMALMSFVGWILFVFFGGLGLVGIPIDSIR 117
            ++S  V++MA++S +GWILF+ FGG+GLV +P+DSIR
Sbjct:   83 RVSLLVYIMAIVSTIGWILFMVFGGIGLVALPMDSIR 119
[Close]
BLAST of mRNA_S-dermatodea_contig94331.17463.1 vs. uniprot
Match: A0A7R9Y953_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y953_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 8.330e-5
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   13 SFPVFVMALMSFVGWILFVFFGGLGLVGIPIDSI-----RVRRMARRRNR 147
            SFPV+++ALM+FVG+  FV FGG+G+  +PID I     R +R+ +RR R
Sbjct:  208 SFPVYLIALMAFVGYFFFVIFGGVGMAALPIDLILSYVYRPKRIDQRRFR 257
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94331.17463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FRZ6_ECTSI4.750e-1497.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1R2BB86_9CILI4.950e-653.19Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A7S1XYX2_9STRA4.460e-550.00Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A059LHM2_9CHLO6.050e-556.76Uncharacterized protein (Fragment) n=1 Tax=Helicos... [more]
A0A7R9Y953_9STRA8.330e-550.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig94331contigS-dermatodea_contig94331:238..402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size165
Cds size135
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925407.5516093-UTR-S-dermatodea_contig94331:237..2671622925407.5516093-UTR-S-dermatodea_contig94331:237..267Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig94331 238..267 +
1694079913.0463128-UTR-S-dermatodea_contig94331:237..2671694079913.0463128-UTR-S-dermatodea_contig94331:237..267Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig94331 238..267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925407.5630994-CDS-S-dermatodea_contig94331:267..4021622925407.5630994-CDS-S-dermatodea_contig94331:267..402Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94331 268..402 +
1694079913.0589604-CDS-S-dermatodea_contig94331:267..4021694079913.0589604-CDS-S-dermatodea_contig94331:267..402Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94331 268..402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig94331.17463.1prot_S-dermatodea_contig94331.17463.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig94331 268..402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig94331.17463.1

>prot_S-dermatodea_contig94331.17463.1 ID=prot_S-dermatodea_contig94331.17463.1|Name=mRNA_S-dermatodea_contig94331.17463.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=45bp
MALMSFVGWILFVFFGGLGLVGIPIDSIRVRRMARRRNRCCVCG*
back to top

mRNA from alignment at S-dermatodea_contig94331:238..402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig94331.17463.1 ID=mRNA_S-dermatodea_contig94331.17463.1|Name=mRNA_S-dermatodea_contig94331.17463.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at S-dermatodea_contig94331:238..402+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTTCGCAGCTCTCCTTCCCGGTGTTCGTGATGGCGTTGATGTCGTTCGT
AGGCTGGATCCTGTTCGTGTTCTTCGGCGGCCTTGGCCTCGTGGGCATCC
CTATCGACAGCATCAGGGTGAGGCGGATGGCGAGGCGACGTAACCGTTGC
TGTGTGTGTGGATGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig94331:238..402+

>mRNA_S-dermatodea_contig94331.17463.1 ID=mRNA_S-dermatodea_contig94331.17463.1|Name=mRNA_S-dermatodea_contig94331.17463.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at S-dermatodea_contig94331:238..402+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGTTGATGTCGTTCGTAGGCTGGATCCTGTTCGTGTTCTTCGGCGG
CCTTGGCCTCGTGGGCATCCCTATCGACAGCATCAGGGTGAGGCGGATGG
CGAGGCGACGTAACCGTTGCTGTGTGTGTGGATGAATGGCGTTGATGTCG
TTCGTAGGCTGGATCCTGTTCGTGTTCTTCGGCGGCCTTGGCCTCGTGGG
CATCCCTATCGACAGCATCAGGGTGAGGCGGATGGCGAGGCGACGTAACC
GTTGCTGTGTGTGTGGATGA
back to top