mRNA_S-dermatodea_contig9425.17458.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9425.17458.1
Unique NamemRNA_S-dermatodea_contig9425.17458.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 3.820e-87
Identity = 162/315 (51.43%), Postives = 202/315 (64.13%), Query Frame = 1
Query:    1 GSNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWIT-LDPPPCGDGLAYPEEFWNCADISIVSEGSTSSSSTTETQPTPAPISDPVSNSEEXXXXXXXXXXXXXXXXXXXXVAEDDKYDGDGKDDGGDSNGXXXXXXXXDECSDPVGGWGQCGGESWTGSACCRPGYMCYKLVDSYHQCRPIEDSCS 942
            GSN +G+ENS YPVLETY EG ++E+K++V+TYHWGH+E F+C+++DL DG D  VTQ CFN +PL+RA+DD   SPIDP + GR+ LDPPCR +ET+QE   GAFAG V T R+QLP+ +TC+RC+VQMVYYTGN+C+  GY +FNP S P  C PS +DWI  +    CGDG AYPEEFWNCAD+SI S+G             P         + +    XXXXXXXXXXXXXXXX                    XXX      +C DPV  + QCGG  + GS CC  GY C ++ D Y +CRP  D CS
Sbjct:   62 GSNRYGQENSNYPVLETYAEGGILEVKIVVATYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEIVGQHCGDGDAYPEEFWNCADVSITSDGG------------PXXXXXXXXETPKETKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVSTDPDCEDPVDAFAQCGGAGYDGSTCCTAGYECEEMADCYSECRPRGDGCS 364          
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 4.790e-84
Identity = 198/397 (49.87%), Postives = 240/397 (60.45%), Query Frame = 1
Query:    1 GSNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEGST--------------SSSSTTETQPTPAPIS------------------DPVSNSEEXXXXXXXXXXXXXXXXXXXXVAEDDKYDGDGKDDGGDSNGXXXXXXXXD-------------------ECSDPVGGWGQCGGESWTGSACCRPGYMCYKLVDSYHQCRPIEDSCSFHXXXXXXXXXXXXXXXXXXXESVARNEWFSQ 1038
            GSN +G+ENS YPVLETY EG ++E+K++VSTYHWGH+E F+C+++DL DG D  VTQ CFN +PL+RA+DD    PIDP + GR+ LDPPCR +ET+QE   GAFAG V T R+QLP+ +TC+RC+VQM YYTGN+C+  GY +FNP S P  C PS +DWI      CGDG AYPEEFWNCAD+SI S+G                 +     T+P+PAP +                  +P++ S      XXXXXXXXXXXXXXXX                    XXXXXXXX                    +C DPVG + QCGG  + GS CCR GY C K+ D Y +CRP  D CS    XXXXXXXXXXXXXXXXX  V RNE F Q
Sbjct:  111 GSNKYGQENSNYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEAVGQCGDGDAYPEEFWNCADVSITSDGGPXXXXXXXPETPQKPEAPVDEATEPSPAPTAVVEEYXXXXXXXXXXXHEEPMTPSPTTAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVSTDPDCEDPVGAFAQCGGAGYDGSTCCRAGYECEKMADCYSECRPRGDRCSEGWGXXXXXXXXXXXXXXXXXXXVERNEQFHQ 507          
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 9.460e-83
Identity = 137/314 (43.63%), Postives = 178/314 (56.69%), Query Frame = 1
Query:    1 GSNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEGSTSSSSTTETQPTPAPISDPVSNSEEXXXXXXXXXXXXXXXXXXXXVAEDDKYDGDGKDDGGDSNGXXXXXXXXDECSDPVGGWGQCGGESWTGSACCRPGYMCYKLVDSYHQCRPIEDSCS 942
            G+N +   N  +P+L TYQEG V+E+K+ ++ YHWGH+E+FICN++++ D  DG   Q CFN +PL RA+ D   SPIDPN+PGRY++DP CRE ET+Q K +GA  GYV+   YQLPE LTCDRCI+QM YYTGN+C+  GY++F P S P  C P   DWI LD   CG+  +YPEEFW CAD +I  +G  +        PTPAP  +P++                                                     +C DPVG + QCGGE + GS CCR GY C ++   Y QCRPI   CS
Sbjct:   90 GANFYSTPNGDWPILNTYQEGQVLEIKLGMTAYHWGHVEFFICNADEMED-PDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEEFWACADFAITPDGMAN--------PTPAPT-EPLA-----------------------------------------------------DCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCS 340          
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 7.710e-79
Identity = 124/205 (60.49%), Postives = 152/205 (74.15%), Query Frame = 1
Query:    4 SNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEGSTSSSSTTETQPTP 618
            SN +G ENS YPVLETY EG ++E K++VSTYHWGH+E F+C+++DL  G D  VTQ CFN HPL+R  DD   SPIDP++ GR+ LDPPCR +ET+QE  DGAF G V T R++LP+ LTC+RC+VQMVYYTGN+C+  GY +FNPES P  C P+ +DWI      CGDG AYPEEFWNCADISI S+G  + S TT   P P
Sbjct:  114 SNKYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDDDFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDVATARFKLPQGLTCERCVVQMVYYTGNSCKHQGYAEFNPESWPSSCAPTKADWINEVVGHCGDGDAYPEEFWNCADISITSDGDPAPSPTTVLTPAP 318          
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 7.800e-78
Identity = 156/390 (40.00%), Postives = 192/390 (49.23%), Query Frame = 1
Query:    1 GSNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHW-----------------------------------------------------------------------GHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEGSTSSSSTTETQPTPAPISDPVSNSEEXXXXXXXXXXXXXXXXXXXXVAEDDKYDGDGKDDGGDSNGXXXXXXXXDECSDPVGGWGQCGGE-SWTGSACCRPGYMCYKLVDSYHQCRPIE----DSCS 942
            G+N++G+ENS YPV   Y EG +IE+K++VSTYHW                                                                       GHLE+FICN+ED+SD  DG VTQGCFNMHPL+RA DDG ASPIDP+H GRY+LDPPCR  ET+Q+   GA+ G V T RY+LP  LTC RCI+QMVYYTGNAC+ PGYD+F+P SVPDGC P+  DW+      CG+   YPEEFWNCADI I S+         E    PAP +   ++ EE                  XX          G +                 C DP   + QCGG+ S+ G  CC     C +L D Y +CRP E    D+CS
Sbjct:  108 GTNLYGQENSKYPVHGKYSEGGIIEIKIVVSTYHWVRELPELSAQGFICGIAYLAFLVLVAAFAVVVFVFVVEEGEWKSAPTLYAHRAYEAVPGKYRALDYVHGGSGHLEFFICNAEDMSD-PDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVYYTGNACKHPGYDEFDPVSVPDGCAPTKEDWVQTQLGMCGEDGRYPEEFWNCADIEITSD---------EDGGGPAPTTPSPTDEEELSPTPEPSVPTVELPRTPXXXXXXXXXXXSGME-STPVPSVAPASPTATSCDDPAEVYEQCGGDDSYDGRTCCVENSECVELADCYSECRPAETTPEDNCS 486          
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 8.340e-78
Identity = 118/192 (61.46%), Postives = 145/192 (75.52%), Query Frame = 1
Query:    1 GSNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEG 576
            G N +G+EN  YPVL TY EG V+E+K++VSTYHWGH+E F+C++ DL +GED  VTQ CFN +PL+RA DD    PIDP + GR+ LDPPCR +ET+Q+  +GA+ G V T RYQLPE + CDRC+VQMVYYTGN+C+  GY +FNPES P  C PS +DWI      CGDG AYPEEFWNCADISI S+G
Sbjct:  118 GDNKYGRENYNYPVLGTYAEGGVLEVKILVSTYHWGHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGNSCKHEGYAEFNPESWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDG 309          
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 5.430e-77
Identity = 113/191 (59.16%), Postives = 142/191 (74.35%), Query Frame = 1
Query:    4 SNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEG 576
            SN +G+ENS YPV ETY EG ++E+K++VSTYHWGH+E F+CN+ +L  G D  VTQ CFN HPL+RA DD    P DP++ GR+ LDPPCR +ET+Q   DGA+   V T R++LP+ L+C+RC+VQMVYYTGN+C+  GY +FNP S P  C PS +DWI      CGDG AYPEEFWNCADISI S+G
Sbjct:  115 SNKYGQENSNYPVRETYAEGGILEVKIVVSTYHWGHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDG 305          
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 7.920e-76
Identity = 115/192 (59.90%), Postives = 145/192 (75.52%), Query Frame = 1
Query:    1 GSNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEG 576
            GSN +G+ENS YPVLETY EG ++E+K++VSTYHWGH+E F+C+++DL DG D  VTQ CFN HPL+RA+DD    PIDP + GR+ LDPPCR +ET+QE   GAF G V T R+QLP+ +TC+RC+VQM Y+  N+C+  GY +FNP S P  C PS +DWI      CGDG AYPEEFWNCAD+SI S+G
Sbjct:   82 GSNKYGQENSKYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEHPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELVPGAFPGDVATARFQLPQGVTCERCVVQMAYW--NSCKHQGYAEFNPPSWPGSCAPSKADWIKEAVGQCGDGDAYPEEFWNCADVSITSDG 271          
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 4.230e-75
Identity = 118/192 (61.46%), Postives = 147/192 (76.56%), Query Frame = 1
Query:    1 GSNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEG 576
            GSN++G ENS YPVLETY EG ++E K++VSTYHWGH+E F+C++ DL  G D  VTQ CFN HPL+R  DD   SPIDP++ GR+ LDPPCR +ET+QE  DGAF G V T R++LPE ++C+RC+VQMVYYTGN+C+  GY +FNP+S P  C P+ +DWI      CGDG AYPEEFWNCADISI S+G
Sbjct:  113 GSNLYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDANDLPGGPDSTVTQSCFNEHPLDRVDDDYFNSPIDPSNTGRFILDPPCRASETDQELLDGAFPGDVATARFKLPEGVSCERCVVQMVYYTGNSCKHQGYAEFNPDSWPSSCAPTKADWINELVGFCGDGDAYPEEFWNCADISITSDG 304          
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 9.270e-67
Identity = 142/385 (36.88%), Postives = 180/385 (46.75%), Query Frame = 1
Query:    1 GSNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEGSTSSSSTTETQPTPAPISDPVSNSEEXXXXXXXXXXXXXXXXXXXXVAEDDKYDGDGKDDG--------------------------------------------------GDSNGXXXXXXXXD----------------------ECSDPVG-----GWGQCGGESWTGSACCRPGYMCYKLVDSYHQCRP 924
            G+NV+   N  +  L+++  G V+EM ++++ YHWGH E+F+CN++D+ D  DG  TQ CFNMHPL RA DDG ASPIDPN+PGRY++DP CRE ET  E++  +  GY +  RY LP D+ C+ CI+QMVYYTGN C+  GY++FNP S P  C P+  DWI LD   CG    YPEEFW C+D S+ S+GST         P  AP+ DPV   EE                      +DD+  GD  D                                                    GD           D                      E + PV       WGQCGG +W GS CC  GY C    D Y QCRP
Sbjct:  119 GTNVYSTANINWDPLDSFTSGQVLEMDIVMNAYHWGHCEFFVCNTDDMDD-PDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEET--EQSSNSIEGYNIKMRYVLP-DIECEHCILQMVYYTGNTCKHIGYEEFNPTSWPSSCAPNKWDWIELDRYVCGTRGQYPEEFWACSDFSMTSDGST---------PADAPMPDPV--DEEDDEDSTDGGMEMYEYVGCYTDRQDDRILGDKLDSDLMTADFCYEYCSEIGAAYMATQYAFECFCSADEDLDYERHGTAMCDKACRGDEGETCGGENAFDLYRIMPSMDLPTPATPFSEPEPEPTTPVSDGCAEAWGQCGGGNWEGSTCCMEGYECVANNDWYSQCRP 488          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP25_ECTSI3.820e-8751.43EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LD67_ECTSI4.790e-8449.87EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G4D7_ECTSI9.460e-8343.63EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LM92_ECTSI7.710e-7960.49EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JI36_9PHAE7.800e-7840.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMF4_ECTSI8.340e-7861.46EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
D8LM93_ECTSI5.430e-7759.16EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KD35_9PHAE7.920e-7659.90CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KTY6_9PHAE4.230e-7561.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMS9_ECTSI9.270e-6736.88EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9425contigS-dermatodea_contig9425:3329..7290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score271.6
Seed ortholog evalue5e-70
Seed eggNOG ortholog2880.D7FSZ8
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size1604
Cds size987
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9425.17458.1prot_S-dermatodea_contig9425.17458.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9425 3404..6748 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925406.9260054-UTR-S-dermatodea_contig9425:3328..34031622925406.9260054-UTR-S-dermatodea_contig9425:3328..3403Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9425 3329..3403 +
1694079912.5479453-UTR-S-dermatodea_contig9425:3328..34031694079912.5479453-UTR-S-dermatodea_contig9425:3328..3403Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9425 3329..3403 +
1622925407.0300384-UTR-S-dermatodea_contig9425:6748..72901622925407.0300384-UTR-S-dermatodea_contig9425:6748..7290Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9425 6749..7290 +
1694079912.6277657-UTR-S-dermatodea_contig9425:6748..72901694079912.6277657-UTR-S-dermatodea_contig9425:6748..7290Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9425 6749..7290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925406.94043-CDS-S-dermatodea_contig9425:3403..34331622925406.94043-CDS-S-dermatodea_contig9425:3403..3433Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9425 3404..3433 +
1694079912.5606458-CDS-S-dermatodea_contig9425:3403..34331694079912.5606458-CDS-S-dermatodea_contig9425:3403..3433Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9425 3404..3433 +
1622925406.9606998-CDS-S-dermatodea_contig9425:4029..43211622925406.9606998-CDS-S-dermatodea_contig9425:4029..4321Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9425 4030..4321 +
1694079912.5724766-CDS-S-dermatodea_contig9425:4029..43211694079912.5724766-CDS-S-dermatodea_contig9425:4029..4321Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9425 4030..4321 +
1622925406.974757-CDS-S-dermatodea_contig9425:4601..47751622925406.974757-CDS-S-dermatodea_contig9425:4601..4775Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9425 4602..4775 +
1694079912.5824082-CDS-S-dermatodea_contig9425:4601..47751694079912.5824082-CDS-S-dermatodea_contig9425:4601..4775Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9425 4602..4775 +
1622925406.9918785-CDS-S-dermatodea_contig9425:5184..54471622925406.9918785-CDS-S-dermatodea_contig9425:5184..5447Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9425 5185..5447 +
1694079912.5946693-CDS-S-dermatodea_contig9425:5184..54471694079912.5946693-CDS-S-dermatodea_contig9425:5184..5447Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9425 5185..5447 +
1622925407.0046713-CDS-S-dermatodea_contig9425:6120..62011622925407.0046713-CDS-S-dermatodea_contig9425:6120..6201Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9425 6121..6201 +
1694079912.6057787-CDS-S-dermatodea_contig9425:6120..62011694079912.6057787-CDS-S-dermatodea_contig9425:6120..6201Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9425 6121..6201 +
1622925407.0163312-CDS-S-dermatodea_contig9425:6601..67481622925407.0163312-CDS-S-dermatodea_contig9425:6601..6748Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9425 6602..6748 +
1694079912.617871-CDS-S-dermatodea_contig9425:6601..67481694079912.617871-CDS-S-dermatodea_contig9425:6601..6748Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9425 6602..6748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9425.17458.1

>prot_S-dermatodea_contig9425.17458.1 ID=prot_S-dermatodea_contig9425.17458.1|Name=mRNA_S-dermatodea_contig9425.17458.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=329bp
MKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAA
SPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDR
CIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLA
YPEEFWNCADISIVSEGSTSSSSTTETQPTPAPISDPVSNSEEPTPAPTI
DPVSSSENATPSPVAEDDKYDGDGKDDGGDSNGDDVDGDGNDECSDPVGG
WGQCGGESWTGSACCRPGYMCYKLVDSYHQCRPIEDSCSFHWEQCGGIGW
EGASCCSAGSESVARNEWFSQCVPTRRY*
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mRNA from alignment at S-dermatodea_contig9425:3329..7290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9425.17458.1 ID=mRNA_S-dermatodea_contig9425.17458.1|Name=mRNA_S-dermatodea_contig9425.17458.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3962bp|location=Sequence derived from alignment at S-dermatodea_contig9425:3329..7290+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAAGCAACGTGTTCGGAAAGGAAAACAGCGTGTATCCCGTGCTCGAGAC TTACCAGGAAGGCTCCGTGATCGAGATGAAAGTCATCGTGTCCACCTACC ACTGGGTGAGCCGATTTTTCCGATTTTCGTGTAGGCCTCGTTTTGCAGCT GATCCTGATCCTGCCACCGTGGCAGGACCAGGTCGGTGGGAAACAATTAC GGAGGTACACTATAATGAAGTACTCAGGACCAAACCTCATGACCATGAAT ACCCAACTATTCCGACCATGAATACCAAAATTACAAAAAAATCTCATGAA AAACGTTAACGACACGAGATATGGCCATACACAAGAACATCGACCTTGAA ATCTGGATAATTCCAGCCAATTTTGATTTATCTAGGGTTAAGACTTGTGG CAAATTTGGACCTGTTAAGGTTAACTATGGTCCCCAGTAATAAGTAGCAC ATTATAGAGGATGTGATGTGGAACTCACGTGCTCTTCGCAGCCCCCCGCG AAGCTTACTCTCCTTCGAATGATCAGTAGTTGTGGCTCGGCTACATAAAA GCCGTGTCTCAGGGGTACGTGCGGTTTTGTGATGTAGCTCTCGATTGCAA TATTAATAGTAGCTATTTTTTCTTCTGAAACAAAGGCTTACGAACCCGAG CGTGGCCCATATTCTGACCACACCCATCATGTCGCGATCGTGCGACGACA GGGGCACCTGGAGTACTTCATCTGCAACTCGGAGGACCTGTCGGACGGCG AGGATGGCCCCGTGACGCAGGGCTGCTTCAACATGCACCCGCTCAACCGT GCCAAAGACGACGGCGCCGCTAGCCCCATAGACCCTAACCACCCGGGCCG CTACCACCTCGATCCGCCGTGCCGCGAGGCCGAGACCAACCAGGAAAAGG CGGATGGTGCTTTCGCGGGCTACGTGGTGACCGGGCGCTACCAGCTGCCC GAGGACTTGACATGCGACCGCTGCATTGTTCAGATGGTGTACTGTGAGTT GGGGTGCTAACGTTTGTGGCTTCGCTCAGTCGGGTTTCTTCGCCGCCTCG ACGAGGAGGGAGCCGTGCTTGTGATTGATGTGTGTTTTCCCTAAGGTTCT CGAGGATGGTGCAGTTTCTGCACAACATGGCAACATAGGGTCAAGGGTTA GGCTAAGGCCACTATAGCAGTTTGATGGAAAGCATCGCATGCTGTTGCTG TGATGCTGCTAGCATAATCAAAGAGAACGACCACTTACACCGCTCCTCGC CTCTCCGTCTTGTTTTCATTCAGACACGGGCAACGCCTGCAGGCAGCCGG GGTACGACGACTTCAACCCCGAATCCGTGCCTGACGGTTGCGTGCCCTCT GCAAGCGATTGGATCACTCTCGACCCCCCTCCCTGCGGAGACGGGCTCGC CTATCCCGAAGAGTTCTGGAACTGCGCCGACATCTCCATTGTCTCGGGTG CGTTAACCCCCCCACCGGCCAGCATGGATAAAGTTATTTTACCGATAGCG AGGCGCACACCATAGTTTCGTTCCATATGAGTCGTTACGCGTACCACAAA GCAGCTTCTGGTCGTCTCCGAACGCGCCATTTTCATGTAGGACATCAGAC TCCTCAGTCCTTGGGATCGGTGTATAGTGTGGTGTGTCAAATCGTTTATT TTGCTCGGAGTAAAACCGGGTTGGTGCGACTCCCTAAGGCATACTATTAT AGTATGATATGCGACTGCCGTTTCAGCATCAAGCTCGAGTATTGCGGAGC TTGCTCTTGAGGTGTGGCACCAGGCGCGCGAGGTACCCCAGCCTCCCCGA TAGCACTCCGTCGCTCACGGCCCGTCTCGCTCCGCCTTTACCGCTTGTCG CCTCAGAGGGATCGACGTCTTCCTCGAGCACTACGGAAACGCAGCCTACG CCAGCGCCGATATCCGATCCAGTATCAAACTCTGAGGAGCCTACGCCAGC GCCGACGATCGATCCGGTATCAAGCTCCGAGAACGCTACTCCCTCGCCCG TTGCCGAGGATGACAAATACGATGGCGACGGTAAGGATGATGGCGGTGAT AGCAATGGGGATGATGTCGATGGTGACGGTAACGACGAATGCAGCGACCC CGTGGGAGGCTGGGGACAGGTGAGGGTGTGCTGTGTGTGCTGTAGTGAGC GTCGTTCGGCCACGGTGGGAGAATACGTGGTTTTGCTCTGTGTGTGCGGT CGGATGGTTATGATTGGTAGCAGCTGTTCCGGTTCCGGCTCGGGCTGGTT TATGTGCTCTCTTTACTTACCGCCCTGCTTCTGCCTATGGACTGGGCTTC TGGGTCGAGAACTGCGTCGCGGAATGAGGTCTAGGATGTGCTACATAATT CGGAAGGAACCAAAATCAACGACTGCTCCCTAGGTCATACCCCGCCAGTA GACTTTGATACTTGGTTTAACAACAAAATTCTCACGTTTTTTACTGGCCT AAGCTGACAGTCTTTGGTCGGAATGTGGTCGCAATGGCCGTTGAGGAAAT TTGACTCAAACGCGGCGCAGCGGCGTTTTTTTTTGTCGACGCACGGGGCA CGGGGGCCCCGTGCCAGCGCTTTCAAAACTTTTGTTTTTAATGTGCTGGG TTATCCTAAGTGTCTCGAAAACATATTGTGTGTATACGAACTGATAAAGT CTCCCCTCTACCCCGCCACCGATTTGGAAGATGGGTTCAGCAGCTTTTCG GCACGAAACGCGAAATAATGAACGAGGCATATCTGGCAAATTTGAATCTG TCTGTTGCCCCCCGTGTCCGTTTTGAACGTTCCGCTACGAAGTGTGGAGG CGAATCTTGGACCGGATCGGCTTGTTGCCGCCCAGGGTACATGTGCTACA AGCTGGTCGACAGCTACCACCAGGTGTGTTCGTTGTCCGAGTTGATGTTA CCCTCTGATTGGTTCCCCTACCACGATCCTGGCGCGCTTCGTCGGAAATA TGAACGCCCGGTACGCCGGTCGAGTCAGGTGTATCCTCGGTGGGCGATCA TACTCCCGCTCCGGCGTGTCTACTACCACATCGTATCGAGCGCTTGATAT ATATCCCCCTCGAAACCAACGTGTTTCCCCCCTCGCCCAGGTTTAGTTTG TTTTCTTCTCCGTGGCGCCAACTTTGTGGTTTTGAGAACGTACCCCCGGT AAACGCGGTCTCCGAGACTGCCCGCGCTTCCTTACGCACACACGTTCCGG CCCAGGAAAAAAGCACCAAATTCTAAATTATAATTCCTCCCACCACCGTA CGTCGTCGCGCCCTTTTCCCCAGTGCCGGCCTATCGAAGACAGCTGTTCC TTCCACTGGGAGCAATGCGGCGGCATCGGTTGGGAAGGGGCCAGTTGCTG CTCGGCGGGAAGCGAGAGCGTTGCGCGAAACGAGTGGTTCTCCCAGTGCG TTCCCACCCGTCGCTACTAAATCGTGGCGCTGCCACAACATCGGTATGCG GTAGGTAGGGAGGGTTGAATCCCGTGGTGCTTCCTAGCGCTTCTCCGTCT GATCCAGGCAGCGTTGTTTTTAATGGCATGTAGAGCTACTCTGTGTTACG GGATGAGGAGTTTGAAGAAACAGCTCAGTCTAGAGTTGGAGCTCGGATGG ATCACCGGGTTGAGGATAAATTAAACATTTTTTACGCGAGATATCAAGTT TGAACCTTGTTTTTTTTTTCCCGGAGAGCGTTTCTTGGTTCTTGGTGCTG GGAGGTAATTTTTTCGTGTGGTTGTTCTATTGAAAACCGTCCCACCTCTC AGCGAAGACGTCAGCGCCGAGGTCTCTCACTCAGAGACGATCCGAGCCTC ACAATTTTGGCATTTTTTATATCGCGCTCGGCCATTCGGCCCCCATCGAC CACGTGCGTCGAAGCGAAACCGGTAGTGTGTAAGGTAAAATACTTGAGGC AGGTGGTCTGCTTGTCGCCAACCAGGAGTGCGGTTCGTGTTGGCTCGTTG ATACATCCTTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9425:3329..7290+

>mRNA_S-dermatodea_contig9425.17458.1 ID=mRNA_S-dermatodea_contig9425.17458.1|Name=mRNA_S-dermatodea_contig9425.17458.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1974bp|location=Sequence derived from alignment at S-dermatodea_contig9425:3329..7290+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAAGTCATCGTGTCCACCTACCACTGGATGAAAGTCATCGTGTCCAC
CTACCACTGGGGGCACCTGGAGTACTTCATCTGCAACTCGGAGGACCTGT
CGGACGGCGAGGATGGCCCCGTGACGCAGGGCTGCTTCAACATGCACCCG
CTCAACCGTGCCAAAGACGACGGCGCCGCTAGCCCCATAGACCCTAACCA
CCCGGGCCGCTACCACCTCGATCCGCCGTGCCGCGAGGCCGAGACCAACC
AGGAAAAGGCGGATGGTGCTTTCGCGGGCTACGTGGTGACCGGGCGCTAC
CAGCTGCCCGAGGACTTGACATGCGACCGCTGCATTGTTCAGATGGTGTA
CTGGGCACCTGGAGTACTTCATCTGCAACTCGGAGGACCTGTCGGACGGC
GAGGATGGCCCCGTGACGCAGGGCTGCTTCAACATGCACCCGCTCAACCG
TGCCAAAGACGACGGCGCCGCTAGCCCCATAGACCCTAACCACCCGGGCC
GCTACCACCTCGATCCGCCGTGCCGCGAGGCCGAGACCAACCAGGAAAAG
GCGGATGGTGCTTTCGCGGGCTACGTGGTGACCGGGCGCTACCAGCTGCC
CGAGGACTTGACATGCGACCGCTGCATTGTTCAGATGGTGTACTACACGG
GCAACGCCTGCAGGCAGCCGGGGTACGACGACTTCAACCCCGAATCCGTG
CCTGACGGTTGCGTGCCCTCTGCAAGCGATTGGATCACTCTCGACCCCCC
TCCCTGCGGAGACGGGCTCGCCTATCCCGAAGAGTTCTGGAACTGCGCCG
ACATCTCCATTGTCTCGGACACGGGCAACGCCTGCAGGCAGCCGGGGTAC
GACGACTTCAACCCCGAATCCGTGCCTGACGGTTGCGTGCCCTCTGCAAG
CGATTGGATCACTCTCGACCCCCCTCCCTGCGGAGACGGGCTCGCCTATC
CCGAAGAGTTCTGGAACTGCGCCGACATCTCCATTGTCTCGGAGGGATCG
ACGTCTTCCTCGAGCACTACGGAAACGCAGCCTACGCCAGCGCCGATATC
CGATCCAGTATCAAACTCTGAGGAGCCTACGCCAGCGCCGACGATCGATC
CGGTATCAAGCTCCGAGAACGCTACTCCCTCGCCCGTTGCCGAGGATGAC
AAATACGATGGCGACGGTAAGGATGATGGCGGTGATAGCAATGGGGATGA
TGTCGATGGTGACGGTAACGACGAATGCAGCGACCCCGTGGGAGGCTGGG
GACAGAGGGATCGACGTCTTCCTCGAGCACTACGGAAACGCAGCCTACGC
CAGCGCCGATATCCGATCCAGTATCAAACTCTGAGGAGCCTACGCCAGCG
CCGACGATCGATCCGGTATCAAGCTCCGAGAACGCTACTCCCTCGCCCGT
TGCCGAGGATGACAAATACGATGGCGACGGTAAGGATGATGGCGGTGATA
GCAATGGGGATGATGTCGATGGTGACGGTAACGACGAATGCAGCGACCCC
GTGGGAGGCTGGGGACAGTGTGGAGGCGAATCTTGGACCGGATCGGCTTG
TTGCCGCCCAGGGTACATGTGCTACAAGCTGGTCGACAGCTACCACCAGT
GTGGAGGCGAATCTTGGACCGGATCGGCTTGTTGCCGCCCAGGGTACATG
TGCTACAAGCTGGTCGACAGCTACCACCAGTGCCGGCCTATCGAAGACAG
CTGTTCCTTCCACTGGGAGCAATGCGGCGGCATCGGTTGGGAAGGGGCCA
GTTGCTGCTCGGCGGGAAGCGAGAGCGTTGCGCGAAACGAGTGGTTCTCC
CAGTGCGTTCCCACCCGTCGCTACTAATGCCGGCCTATCGAAGACAGCTG
TTCCTTCCACTGGGAGCAATGCGGCGGCATCGGTTGGGAAGGGGCCAGTT
GCTGCTCGGCGGGAAGCGAGAGCGTTGCGCGAAACGAGTGGTTCTCCCAG
TGCGTTCCCACCCGTCGCTACTAA
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