mRNA_S-dermatodea_contig9425.17458.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI) HSP 1 Score: 283 bits (725), Expect = 3.820e-87 Identity = 162/315 (51.43%), Postives = 202/315 (64.13%), Query Frame = 1
Query: 1 GSNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWIT-LDPPPCGDGLAYPEEFWNCADISIVSEGSTSSSSTTETQPTPAPISDPVSNSEEXXXXXXXXXXXXXXXXXXXXVAEDDKYDGDGKDDGGDSNGXXXXXXXXDECSDPVGGWGQCGGESWTGSACCRPGYMCYKLVDSYHQCRPIEDSCS 942
GSN +G+ENS YPVLETY EG ++E+K++V+TYHWGH+E F+C+++DL DG D VTQ CFN +PL+RA+DD SPIDP + GR+ LDPPCR +ET+QE GAFAG V T R+QLP+ +TC+RC+VQMVYYTGN+C+ GY +FNP S P C PS +DWI + CGDG AYPEEFWNCAD+SI S+G P + + XXXXXXXXXXXXXXXX XXX +C DPV + QCGG + GS CC GY C ++ D Y +CRP D CS
Sbjct: 62 GSNRYGQENSNYPVLETYAEGGILEVKIVVATYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEIVGQHCGDGDAYPEEFWNCADVSITSDGG------------PXXXXXXXXETPKETKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVSTDPDCEDPVDAFAQCGGAGYDGSTCCTAGYECEEMADCYSECRPRGDGCS 364
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI) HSP 1 Score: 279 bits (713), Expect = 4.790e-84 Identity = 198/397 (49.87%), Postives = 240/397 (60.45%), Query Frame = 1
Query: 1 GSNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEGST--------------SSSSTTETQPTPAPIS------------------DPVSNSEEXXXXXXXXXXXXXXXXXXXXVAEDDKYDGDGKDDGGDSNGXXXXXXXXD-------------------ECSDPVGGWGQCGGESWTGSACCRPGYMCYKLVDSYHQCRPIEDSCSFHXXXXXXXXXXXXXXXXXXXESVARNEWFSQ 1038
GSN +G+ENS YPVLETY EG ++E+K++VSTYHWGH+E F+C+++DL DG D VTQ CFN +PL+RA+DD PIDP + GR+ LDPPCR +ET+QE GAFAG V T R+QLP+ +TC+RC+VQM YYTGN+C+ GY +FNP S P C PS +DWI CGDG AYPEEFWNCAD+SI S+G + T+P+PAP + +P++ S XXXXXXXXXXXXXXXX XXXXXXXX +C DPVG + QCGG + GS CCR GY C K+ D Y +CRP D CS XXXXXXXXXXXXXXXXX V RNE F Q
Sbjct: 111 GSNKYGQENSNYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEAVGQCGDGDAYPEEFWNCADVSITSDGGPXXXXXXXPETPQKPEAPVDEATEPSPAPTAVVEEYXXXXXXXXXXXHEEPMTPSPTTAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVSTDPDCEDPVGAFAQCGGAGYDGSTCCRAGYECEKMADCYSECRPRGDRCSEGWGXXXXXXXXXXXXXXXXXXXVERNEQFHQ 507
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI) HSP 1 Score: 271 bits (694), Expect = 9.460e-83 Identity = 137/314 (43.63%), Postives = 178/314 (56.69%), Query Frame = 1
Query: 1 GSNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEGSTSSSSTTETQPTPAPISDPVSNSEEXXXXXXXXXXXXXXXXXXXXVAEDDKYDGDGKDDGGDSNGXXXXXXXXDECSDPVGGWGQCGGESWTGSACCRPGYMCYKLVDSYHQCRPIEDSCS 942
G+N + N +P+L TYQEG V+E+K+ ++ YHWGH+E+FICN++++ D DG Q CFN +PL RA+ D SPIDPN+PGRY++DP CRE ET+Q K +GA GYV+ YQLPE LTCDRCI+QM YYTGN+C+ GY++F P S P C P DWI LD CG+ +YPEEFW CAD +I +G + PTPAP +P++ +C DPVG + QCGGE + GS CCR GY C ++ Y QCRPI CS
Sbjct: 90 GANFYSTPNGDWPILNTYQEGQVLEIKLGMTAYHWGHVEFFICNADEMED-PDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEEFWACADFAITPDGMAN--------PTPAPT-EPLA-----------------------------------------------------DCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCS 340
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI) HSP 1 Score: 271 bits (693), Expect = 7.710e-79 Identity = 124/205 (60.49%), Postives = 152/205 (74.15%), Query Frame = 1
Query: 4 SNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEGSTSSSSTTETQPTP 618
SN +G ENS YPVLETY EG ++E K++VSTYHWGH+E F+C+++DL G D VTQ CFN HPL+R DD SPIDP++ GR+ LDPPCR +ET+QE DGAF G V T R++LP+ LTC+RC+VQMVYYTGN+C+ GY +FNPES P C P+ +DWI CGDG AYPEEFWNCADISI S+G + S TT P P
Sbjct: 114 SNKYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDDDFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDVATARFKLPQGLTCERCVVQMVYYTGNSCKHQGYAEFNPESWPSSCAPTKADWINEVVGHCGDGDAYPEEFWNCADISITSDGDPAPSPTTVLTPAP 318
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE) HSP 1 Score: 263 bits (672), Expect = 7.800e-78 Identity = 156/390 (40.00%), Postives = 192/390 (49.23%), Query Frame = 1
Query: 1 GSNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHW-----------------------------------------------------------------------GHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEGSTSSSSTTETQPTPAPISDPVSNSEEXXXXXXXXXXXXXXXXXXXXVAEDDKYDGDGKDDGGDSNGXXXXXXXXDECSDPVGGWGQCGGE-SWTGSACCRPGYMCYKLVDSYHQCRPIE----DSCS 942
G+N++G+ENS YPV Y EG +IE+K++VSTYHW GHLE+FICN+ED+SD DG VTQGCFNMHPL+RA DDG ASPIDP+H GRY+LDPPCR ET+Q+ GA+ G V T RY+LP LTC RCI+QMVYYTGNAC+ PGYD+F+P SVPDGC P+ DW+ CG+ YPEEFWNCADI I S+ E PAP + ++ EE XX G + C DP + QCGG+ S+ G CC C +L D Y +CRP E D+CS
Sbjct: 108 GTNLYGQENSKYPVHGKYSEGGIIEIKIVVSTYHWVRELPELSAQGFICGIAYLAFLVLVAAFAVVVFVFVVEEGEWKSAPTLYAHRAYEAVPGKYRALDYVHGGSGHLEFFICNAEDMSD-PDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVYYTGNACKHPGYDEFDPVSVPDGCAPTKEDWVQTQLGMCGEDGRYPEEFWNCADIEITSD---------EDGGGPAPTTPSPTDEEELSPTPEPSVPTVELPRTPXXXXXXXXXXXSGME-STPVPSVAPASPTATSCDDPAEVYEQCGGDDSYDGRTCCVENSECVELADCYSECRPAETTPEDNCS 486
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI) HSP 1 Score: 263 bits (673), Expect = 8.340e-78 Identity = 118/192 (61.46%), Postives = 145/192 (75.52%), Query Frame = 1
Query: 1 GSNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEG 576
G N +G+EN YPVL TY EG V+E+K++VSTYHWGH+E F+C++ DL +GED VTQ CFN +PL+RA DD PIDP + GR+ LDPPCR +ET+Q+ +GA+ G V T RYQLPE + CDRC+VQMVYYTGN+C+ GY +FNPES P C PS +DWI CGDG AYPEEFWNCADISI S+G
Sbjct: 118 GDNKYGRENYNYPVLGTYAEGGVLEVKILVSTYHWGHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGNSCKHEGYAEFNPESWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDG 309
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI) HSP 1 Score: 255 bits (652), Expect = 5.430e-77 Identity = 113/191 (59.16%), Postives = 142/191 (74.35%), Query Frame = 1
Query: 4 SNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEG 576
SN +G+ENS YPV ETY EG ++E+K++VSTYHWGH+E F+CN+ +L G D VTQ CFN HPL+RA DD P DP++ GR+ LDPPCR +ET+Q DGA+ V T R++LP+ L+C+RC+VQMVYYTGN+C+ GY +FNP S P C PS +DWI CGDG AYPEEFWNCADISI S+G
Sbjct: 115 SNKYGQENSNYPVRETYAEGGILEVKIVVSTYHWGHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDG 305
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE) HSP 1 Score: 256 bits (655), Expect = 7.920e-76 Identity = 115/192 (59.90%), Postives = 145/192 (75.52%), Query Frame = 1
Query: 1 GSNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEG 576
GSN +G+ENS YPVLETY EG ++E+K++VSTYHWGH+E F+C+++DL DG D VTQ CFN HPL+RA+DD PIDP + GR+ LDPPCR +ET+QE GAF G V T R+QLP+ +TC+RC+VQM Y+ N+C+ GY +FNP S P C PS +DWI CGDG AYPEEFWNCAD+SI S+G
Sbjct: 82 GSNKYGQENSKYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEHPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELVPGAFPGDVATARFQLPQGVTCERCVVQMAYW--NSCKHQGYAEFNPPSWPGSCAPSKADWIKEAVGQCGDGDAYPEEFWNCADVSITSDG 271
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE) HSP 1 Score: 265 bits (677), Expect = 4.230e-75 Identity = 118/192 (61.46%), Postives = 147/192 (76.56%), Query Frame = 1
Query: 1 GSNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEG 576
GSN++G ENS YPVLETY EG ++E K++VSTYHWGH+E F+C++ DL G D VTQ CFN HPL+R DD SPIDP++ GR+ LDPPCR +ET+QE DGAF G V T R++LPE ++C+RC+VQMVYYTGN+C+ GY +FNP+S P C P+ +DWI CGDG AYPEEFWNCADISI S+G
Sbjct: 113 GSNLYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDANDLPGGPDSTVTQSCFNEHPLDRVDDDYFNSPIDPSNTGRFILDPPCRASETDQELLDGAFPGDVATARFKLPEGVSCERCVVQMVYYTGNSCKHQGYAEFNPDSWPSSCAPTKADWINELVGFCGDGDAYPEEFWNCADISITSDG 304
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI) HSP 1 Score: 233 bits (594), Expect = 9.270e-67 Identity = 142/385 (36.88%), Postives = 180/385 (46.75%), Query Frame = 1
Query: 1 GSNVFGKENSVYPVLETYQEGSVIEMKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAASPIDPNHPGRYHLDPPCREAETNQEKADGAFAGYVVTGRYQLPEDLTCDRCIVQMVYYTGNACRQPGYDDFNPESVPDGCVPSASDWITLDPPPCGDGLAYPEEFWNCADISIVSEGSTSSSSTTETQPTPAPISDPVSNSEEXXXXXXXXXXXXXXXXXXXXVAEDDKYDGDGKDDG--------------------------------------------------GDSNGXXXXXXXXD----------------------ECSDPVG-----GWGQCGGESWTGSACCRPGYMCYKLVDSYHQCRP 924
G+NV+ N + L+++ G V+EM ++++ YHWGH E+F+CN++D+ D DG TQ CFNMHPL RA DDG ASPIDPN+PGRY++DP CRE ET E++ + GY + RY LP D+ C+ CI+QMVYYTGN C+ GY++FNP S P C P+ DWI LD CG YPEEFW C+D S+ S+GST P AP+ DPV EE +DD+ GD D GD D E + PV WGQCGG +W GS CC GY C D Y QCRP
Sbjct: 119 GTNVYSTANINWDPLDSFTSGQVLEMDIVMNAYHWGHCEFFVCNTDDMDD-PDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEET--EQSSNSIEGYNIKMRYVLP-DIECEHCILQMVYYTGNTCKHIGYEEFNPTSWPSSCAPNKWDWIELDRYVCGTRGQYPEEFWACSDFSMTSDGST---------PADAPMPDPV--DEEDDEDSTDGGMEMYEYVGCYTDRQDDRILGDKLDSDLMTADFCYEYCSEIGAAYMATQYAFECFCSADEDLDYERHGTAMCDKACRGDEGETCGGENAFDLYRIMPSMDLPTPATPFSEPEPEPTTPVSDGCAEAWGQCGGGNWEGSTCCMEGYECVANNDWYSQCRP 488 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9425.17458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9425.17458.1 >prot_S-dermatodea_contig9425.17458.1 ID=prot_S-dermatodea_contig9425.17458.1|Name=mRNA_S-dermatodea_contig9425.17458.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=329bp MKVIVSTYHWGHLEYFICNSEDLSDGEDGPVTQGCFNMHPLNRAKDDGAAback to top mRNA from alignment at S-dermatodea_contig9425:3329..7290+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9425.17458.1 ID=mRNA_S-dermatodea_contig9425.17458.1|Name=mRNA_S-dermatodea_contig9425.17458.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3962bp|location=Sequence derived from alignment at S-dermatodea_contig9425:3329..7290+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9425:3329..7290+ >mRNA_S-dermatodea_contig9425.17458.1 ID=mRNA_S-dermatodea_contig9425.17458.1|Name=mRNA_S-dermatodea_contig9425.17458.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1974bp|location=Sequence derived from alignment at S-dermatodea_contig9425:3329..7290+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |