mRNA_S-dermatodea_contig94240.17457.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig94240.17457.1
Unique NamemRNA_S-dermatodea_contig94240.17457.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig94240.17457.1 vs. uniprot
Match: A0A254MXB8_9BURK (Ig-like domain-containing protein n=1 Tax=Pelomonas puraquae TaxID=431059 RepID=A0A254MXB8_9BURK)

HSP 1 Score: 54.7 bits (130), Expect = 3.880e-6
Identity = 46/132 (34.85%), Postives = 63/132 (47.73%), Query Frame = 1 
Query:    1 YMAGFAMRSNQRLSGVRTLINATATASGSTWTVGGTQVNEYRLNYDATYNP-RNQSLLKTVQECA---TSISCLPSHQLAYNEHSAIGPEVKPASFDPLFGKTFSAASD--------IKTGDFNADGKADIL 360
            Y  G    S +RL  + T +N+ ATA G+    GGT V   +L YD  Y P   +S +  +Q+CA   +S  CLP+  L Y   ++ G +   A     F  +  A  D        + TGDFN DGK DIL
Sbjct:  302 YQQGRKNVSLRRLKSITTYVNSPATALGAN---GGTAVRTTQLTYD--YGPVTGRSRIVKIQDCAGGPSSTRCLPATNLTYTAGTSDGYQSNAA-----FASSNLATQDLLGNGTYGVLTGDFNGDGKTDIL 423
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BLAST of mRNA_S-dermatodea_contig94240.17457.1 vs. uniprot
Match: A0A254NCE1_9BURK (Ig-like domain-containing protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A254NCE1_9BURK)

HSP 1 Score: 52.8 bits (125), Expect = 1.830e-5
Identity = 46/131 (35.11%), Postives = 64/131 (48.85%), Query Frame = 1 
Query:    1 YMAGFAMRSNQRLSGVRTLINATATASGSTWTVGGTQVNEYRLNYDATYNP-RNQSLLKTVQECA---TSISCLPSHQLAYNEHSAIGPEVKP-------ASFDPLFGKTFSAASDIKTGDFNADGKADIL 360
            Y  G    S +RL  + T +N+ AT  G+    GGT V   +L YD  Y P   +S +  +Q+CA   TS  CLP+  LAY   ++ G +          A+ D L   T+     + TGDF+ DGK DIL
Sbjct:  302 YQQGRKNVSLRRLKSITTYVNSPATTLGAN---GGTPVRTTQLTYD--YGPVTGRSRVVKIQDCAGGPTSTRCLPATNLAYTAGTSDGYQSSGGFAAGGLATQDLLGDGTYG----VLTGDFDGDGKTDIL 423
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94240.17457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A254MXB8_9BURK3.880e-634.85Ig-like domain-containing protein n=1 Tax=Pelomona... [more]
A0A254NCE1_9BURK1.830e-535.11Ig-like domain-containing protein n=2 Tax=Proteoba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig94240contigS-dermatodea_contig94240:1..366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size366
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925406.8770642-UTR-S-dermatodea_contig94240:0..31622925406.8770642-UTR-S-dermatodea_contig94240:0..3Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig94240 1..3 +
1694079912.5269399-UTR-S-dermatodea_contig94240:0..31694079912.5269399-UTR-S-dermatodea_contig94240:0..3Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig94240 1..3 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925406.8903742-CDS-S-dermatodea_contig94240:3..3661622925406.8903742-CDS-S-dermatodea_contig94240:3..366Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94240 4..366 +
1694079912.536646-CDS-S-dermatodea_contig94240:3..3661694079912.536646-CDS-S-dermatodea_contig94240:3..366Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94240 4..366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig94240.17457.1prot_S-dermatodea_contig94240.17457.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig94240 4..366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig94240.17457.1

>prot_S-dermatodea_contig94240.17457.1 ID=prot_S-dermatodea_contig94240.17457.1|Name=mRNA_S-dermatodea_contig94240.17457.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
MAGFAMRSNQRLSGVRTLINATATASGSTWTVGGTQVNEYRLNYDATYNP
RNQSLLKTVQECATSISCLPSHQLAYNEHSAIGPEVKPASFDPLFGKTFS
AASDIKTGDFNADGKADILRL
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mRNA from alignment at S-dermatodea_contig94240:1..366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig94240.17457.1 ID=mRNA_S-dermatodea_contig94240.17457.1|Name=mRNA_S-dermatodea_contig94240.17457.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at S-dermatodea_contig94240:1..366+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TACATGGCAGGCTTTGCGATGCGAAGCAACCAGCGTTTAAGTGGGGTGCG
CACCTTGATCAACGCCACGGCCACGGCCAGTGGCAGCACCTGGACGGTCG
GCGGAACGCAGGTCAATGAGTACAGGCTGAACTACGATGCCACGTACAAC
CCAAGAAACCAAAGCTTACTGAAAACAGTGCAGGAGTGTGCAACTTCCAT
ATCATGCTTACCATCACACCAACTTGCTTACAACGAGCACTCAGCCATTG
GTCCAGAAGTTAAACCTGCATCCTTTGATCCTTTGTTCGGTAAGACTTTC
TCAGCGGCAAGCGATATTAAGACAGGTGACTTTAATGCTGATGGCAAAGC
AGACATTCTAAGGTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig94240:1..366+

>mRNA_S-dermatodea_contig94240.17457.1 ID=mRNA_S-dermatodea_contig94240.17457.1|Name=mRNA_S-dermatodea_contig94240.17457.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig94240:1..366+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGGCTTTGCGATGCGAAGCAACCAGCGTTTAAGTGGGGTGCGCAC
CTTGATCAACGCCACGGCCACGGCCAGTGGCAGCACCTGGACGGTCGGCG
GAACGCAGGTCAATGAGTACAGGCTGAACTACGATGCCACGTACAACCCA
AGAAACCAAAGCTTACTGAAAACAGTGCAGGAGTGTGCAACTTCCATATC
ATGCTTACCATCACACCAACTTGCTTACAACGAGCACTCAGCCATTGGTC
CAGAAGTTAAACCTGCATCCTTTGATCCTTTGTTCGGTAAGACTTTCTCA
GCGGCAAGCGATATTAAGACAGGTGACTTTAATGCTGATGGCAAAGCAGA
CATTCTAAGGTTGATGGCAGGCTTTGCGATGCGAAGCAACCAGCGTTTAA
GTGGGGTGCGCACCTTGATCAACGCCACGGCCACGGCCAGTGGCAGCACC
TGGACGGTCGGCGGAACGCAGGTCAATGAGTACAGGCTGAACTACGATGC
CACGTACAACCCAAGAAACCAAAGCTTACTGAAAACAGTGCAGGAGTGTG
CAACTTCCATATCATGCTTACCATCACACCAACTTGCTTACAACGAGCAC
TCAGCCATTGGTCCAGAAGTTAAACCTGCATCCTTTGATCCTTTGTTCGG
TAAGACTTTCTCAGCGGCAAGCGATATTAAGACAGGTGACTTTAATGCTG
ATGGCAAAGCAGACATTCTAAGGTTG
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