mRNA_S-dermatodea_contig94235.17455.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig94235.17455.1
Unique NamemRNA_S-dermatodea_contig94235.17455.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig94235.17455.1 vs. uniprot
Match: D7FIT4_ECTSI (Tub domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIT4_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 3.650e-26
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1
Query:    1 IFYDFLPCNQEGDRFLMCSKKRPNNATSNYLVSMRAGDLDRNSQNFLGKLRANFVGTEFQV 183
            IF ++    +EGDRFLMCSKKRPNNATSNYLVSMRAGDLDRNS NFLGKLRANFVGTEFQV
Sbjct:   42 IFPEYSLFLKEGDRFLMCSKKRPNNATSNYLVSMRAGDLDRNSTNFLGKLRANFVGTEFQV 102          
BLAST of mRNA_S-dermatodea_contig94235.17455.1 vs. uniprot
Match: A0A6H5JKE0_9PHAE (Tub domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKE0_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.290e-21
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 1
Query:   49 MCSKKRPNNATSNYLVSMRAGDLDRNSQNFLGKLRANFVGTEFQV 183
            MCSKKRPNNATSNYLVSMRAGDLDRNS NFLGKLRANFVGTEFQV
Sbjct:    1 MCSKKRPNNATSNYLVSMRAGDLDRNSTNFLGKLRANFVGTEFQV 45          
BLAST of mRNA_S-dermatodea_contig94235.17455.1 vs. uniprot
Match: A0A835YWG7_9STRA (Tub domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 6.210e-21
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 1
Query:    1 IFYDFLPCNQEGDRFLMCSKKRPNNATSNYLVSMRAGDLDRNSQNFLGKLRANFVGTEFQV 183
            +F ++     +GD+FLMCSK+RPNN TSNY++SMRAGDL+R S N+LGKLRANF+GTEFQ+
Sbjct:   30 LFPEYHVYLADGDKFLMCSKRRPNNKTSNYIISMRAGDLNRGSPNYLGKLRANFIGTEFQI 90          
BLAST of mRNA_S-dermatodea_contig94235.17455.1 vs. uniprot
Match: A0A7S3ZVG1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVG1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 8.720e-21
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1
Query:    1 IFYDFLPCNQEGDRFLMCSKKRPNNATSNYLVSMRAGDLDRNSQNFLGKLRANFVGTEFQV 183
            +F ++    +EGDRFLMCSKKRPNN TSNYL+SM  GDL RNS+N++GKLRANF GTEFQV
Sbjct:  481 LFPEYAVYMKEGDRFLMCSKKRPNNKTSNYLISMGEGDLKRNSKNYIGKLRANFAGTEFQV 541          
BLAST of mRNA_S-dermatodea_contig94235.17455.1 vs. uniprot
Match: F0XZM0_AURAN (Tub domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZM0_AURAN)

HSP 1 Score: 89.7 bits (221), Expect = 3.060e-20
Identity = 40/61 (65.57%), Postives = 49/61 (80.33%), Query Frame = 1
Query:    1 IFYDFLPCNQEGDRFLMCSKKRPNNATSNYLVSMRAGDLDRNSQNFLGKLRANFVGTEFQV 183
            +F ++    +EGDRF+MCSKKRPNN TSNYL+SM   DL RNS N++GKLRANF GTEFQ+
Sbjct:   31 LFPEYSVFMKEGDRFMMCSKKRPNNKTSNYLISMGENDLKRNSHNYIGKLRANFAGTEFQI 91          
BLAST of mRNA_S-dermatodea_contig94235.17455.1 vs. uniprot
Match: A0A7S3JWP8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWP8_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.050e-19
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    1 IFYDFLPCNQEGDRFLMCSKKRPNNATSNYLVSMRAGDLDRNSQNFLGKLRANFVGTEFQV 183
            +F ++    +EGDRFLMCSKKRPNN TSNYL+SM   DL RNS+N++GKLRANF GTEFQ+
Sbjct:  465 LFPEYYVYMKEGDRFLMCSKKRPNNKTSNYLISMAEHDLKRNSKNYIGKLRANFAGTEFQI 525          
BLAST of mRNA_S-dermatodea_contig94235.17455.1 vs. uniprot
Match: A0A7S2XZ24_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ24_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.170e-17
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 1
Query:   37 DRFLMCSKKRPNNATSNYLVSMRAGDLDRNSQNFLGKLRANFVGTEFQV 183
            +RFL+CSKKRP N TSNYL+SM+ GDL+R+  NFLGKLRANFVGTEFQ+
Sbjct:   82 ERFLLCSKKRPGNKTSNYLISMKQGDLNRSGTNFLGKLRANFVGTEFQI 130          
BLAST of mRNA_S-dermatodea_contig94235.17455.1 vs. uniprot
Match: A0A7S0XDB5_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDB5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.900e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1
Query:   28 QEGDRFLMCSKKRPNNATSNYLVSMRAGDLDRNSQNFLGKLRANFVGTEFQV 183
            ++GDRFLM SKKRPNN TSNYL+SM   DL+R S N+LGKLR+NFVGTEFQV
Sbjct:  381 KDGDRFLMTSKKRPNNKTSNYLISMAENDLNRESGNYLGKLRSNFVGTEFQV 432          
BLAST of mRNA_S-dermatodea_contig94235.17455.1 vs. uniprot
Match: A0A485KK64_9STRA (Aste57867_8385 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK64_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 7.160e-17
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 1
Query:    1 IFYDFLPCNQEGDRFLMCSKKRPNNATSNYLVSMRAGDLDR-NSQNFLGKLRANFVGTEFQV 183
            +F ++    +EGDRFL+ +KKRPNN TSNYL+SM+ GDL R +S+NFLGKLRANF+GTEF +
Sbjct:  310 LFPEYCLYMKEGDRFLLTAKKRPNNRTSNYLISMQRGDLSRKSSENFLGKLRANFIGTEFVI 371          
BLAST of mRNA_S-dermatodea_contig94235.17455.1 vs. uniprot
Match: A0A397DI17_9STRA (Tub domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DI17_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.130e-16
Identity = 38/62 (61.29%), Postives = 50/62 (80.65%), Query Frame = 1
Query:    1 IFYDFLPCNQEGDRFLMCSKKRPNNATSNYLVSMRAGDLDRN-SQNFLGKLRANFVGTEFQV 183
            +F ++    ++GDRFL+ +KKRPNN TSNYL+SM+ GDL R  S+NFLGKLRANF+GTEF +
Sbjct:  232 LFPEYCLYMKDGDRFLLTAKKRPNNRTSNYLISMQRGDLSRKGSENFLGKLRANFIGTEFVI 293          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94235.17455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIT4_ECTSI3.650e-2685.25Tub domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JKE0_9PHAE3.290e-2197.78Tub domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YWG7_9STRA6.210e-2165.57Tub domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3ZVG1_9STRA8.720e-2170.49Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0XZM0_AURAN3.060e-2065.57Tub domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7S3JWP8_9STRA1.050e-1967.21Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2XZ24_9STRA1.170e-1775.51Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0XDB5_9STRA3.900e-1775.00Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A485KK64_9STRA7.160e-1762.90Aste57867_8385 protein n=1 Tax=Aphanomyces stellat... [more]
A0A397DI17_9STRA2.130e-1661.29Tub domain-containing protein n=1 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig94235contigS-dermatodea_contig94235:93..305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue1e-20
Seed eggNOG ortholog2880.D7FIT4
KEGG koko:K19600
EggNOG free text desc.phosphatidylinositol binding
EggNOG OGsKOG2502@1,KOG2502@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925406.7388804-CDS-S-dermatodea_contig94235:92..3051622925406.7388804-CDS-S-dermatodea_contig94235:92..305Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94235 93..305 +
1694079912.4455986-CDS-S-dermatodea_contig94235:92..3051694079912.4455986-CDS-S-dermatodea_contig94235:92..305Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94235 93..305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig94235.17455.1prot_S-dermatodea_contig94235.17455.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig94235 93..305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig94235.17455.1

>prot_S-dermatodea_contig94235.17455.1 ID=prot_S-dermatodea_contig94235.17455.1|Name=mRNA_S-dermatodea_contig94235.17455.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=71bp
IFYDFLPCNQEGDRFLMCSKKRPNNATSNYLVSMRAGDLDRNSQNFLGKL
RANFVGTEFQVAYRRKFYFL*
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mRNA from alignment at S-dermatodea_contig94235:93..305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig94235.17455.1 ID=mRNA_S-dermatodea_contig94235.17455.1|Name=mRNA_S-dermatodea_contig94235.17455.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at S-dermatodea_contig94235:93..305+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTTTTTATGATTTTTTGCCGTGCAATCAGGAGGGCGACAGGTTTCTGAT GTGCTCAAAGAAGCGTCCAAACAACGCCACATCGAACTACCTTGTTTCCA TGAGGGCCGGCGATCTGGACCGCAATTCCCAGAATTTTCTGGGAAAACTC CGGGCAAACTTCGTCGGCACCGAGTTCCAGGTAGCGTACCGCAGAAAGTT CTACTTTTTATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig94235:93..305+

>mRNA_S-dermatodea_contig94235.17455.1 ID=mRNA_S-dermatodea_contig94235.17455.1|Name=mRNA_S-dermatodea_contig94235.17455.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at S-dermatodea_contig94235:93..305+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTTTTTATGATTTTTTGCCGTGCAATCAGGAGGGCGACAGGTTTCTGAT
GTGCTCAAAGAAGCGTCCAAACAACGCCACATCGAACTACCTTGTTTCCA
TGAGGGCCGGCGATCTGGACCGCAATTCCCAGAATTTTCTGGGAAAACTC
CGGGCAAACTTCGTCGGCACCGAGTTCCAGGTAGCGTACCGCAGAAAGTT
CTACTTTTTATGAATTTTTTATGATTTTTTGCCGTGCAATCAGGAGGGCG
ACAGGTTTCTGATGTGCTCAAAGAAGCGTCCAAACAACGCCACATCGAAC
TACCTTGTTTCCATGAGGGCCGGCGATCTGGACCGCAATTCCCAGAATTT
TCTGGGAAAACTCCGGGCAAACTTCGTCGGCACCGAGTTCCAGGTAGCGT
ACCGCAGAAAGTTCTACTTTTTATGA
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