mRNA_S-dermatodea_contig9422.17454.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9422.17454.1
Unique NamemRNA_S-dermatodea_contig9422.17454.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9422.17454.1 vs. uniprot
Match: A0A6H5L5W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5W5_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 3.720e-54
Identity = 99/155 (63.87%), Postives = 118/155 (76.13%), Query Frame = 1 
Query:  484 MRVKQGFKCRVYRTPECRPNEVNDTLPMGTTVTVSTDWGEAMEKHPLRGK-GKGKVLWMIDPEEGFVERRPLEDVPDNG--KAAATQVVPPT------AFNAEERLEAIRGAASMPEILRAMLRRGAYFKGATSVHDCIDVHRAALRAAATLMRK 921
            M+VKQGFKC+VY+TP CRP+EV D LPMGT VT+STDWG AMEKHP RGK GKGKVLWM++P+EGF+ERRPLED+   G   A   +V  P+      A   EER+  +RGA  M E+LR+ LRRGAYF+GA  VH  ++VHRAALRAAATLMRK
Sbjct:    1 MKVKQGFKCKVYKTPACRPDEVVDVLPMGTIVTLSTDWGGAMEKHPQRGKSGKGKVLWMVEPQEGFLERRPLEDLQPKGGDDAVEAEVAAPSPHAAAVALTPEERMGIVRGATKMSELLRSTLRRGAYFEGAAGVHCFVEVHRAALRAAATLMRK 155
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BLAST of mRNA_S-dermatodea_contig9422.17454.1 vs. uniprot
Match: D7G2D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D6_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.580e-41
Identity = 84/136 (61.76%), Postives = 99/136 (72.79%), Query Frame = 1 
Query:  541 NEVNDTLPMGTTVTVSTDWGEAMEKHPLRGK-GKGKVLWMIDPEEGFVERRPLEDVP----DNGKAAATQVVPPTA----FNAEERLEAIRGAASMPEILRAMLRRGAYFKGATSVHDCIDVHRAALRAAATLMRK 921
            ++V D LPMGT VT+STDWGE MEKHP RGK GKGKVLWM++P+EGF+ERRPLED+P    D    A     PP A       EER+  +RGA  M E+LR+ LRRGAYF+GA  VH  ++VHRAALRAAATLMRK
Sbjct:    2 SQVVDVLPMGTIVTLSTDWGEVMEKHPQRGKNGKGKVLWMVEPQEGFLERRPLEDLPANRGDEADEAEVAAPPPHAAPVSLTPEERMGIVRGATKMSELLRSTLRRGAYFEGAAGVHSFLEVHRAALRAAATLMRK 137
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BLAST of mRNA_S-dermatodea_contig9422.17454.1 vs. uniprot
Match: A0A7S3XV21_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV21_HETAK)

HSP 1 Score: 58.2 bits (139), Expect = 5.640e-7
Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 1 
Query:  193 DGAPVVRIASLLNGGLYFARPTEACALLRSLT--RTEPERYPAWPSIEEGLEAKRELERCQTYYKDHLLPMSLGGGEDTKVRLCGETASHQGKGVFLWKMRVKQGF 504
            +G PV RIASL++G +Y ARPTE CAL+RS+   +   ER PA+  IE    A+ EL+     Y    L  ++  GE  K      TAS  G+   + K + +QG 
Sbjct:    1 EGTPVHRIASLVDGAVYIARPTEDCALVRSILIDKENKERIPAYKHIERARLARLELKARMEEYN---LESAISAGEGEK------TASDNGE---IAKSKSEQGL 94
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BLAST of mRNA_S-dermatodea_contig9422.17454.1 vs. uniprot
Match: A0A7S2DN42_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DN42_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 9.540e-7
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:  160 LEDIEGVYEDVDGAPVVRIASLLNGGLYFARPTEACALLRSLTRTEPERYPAWPSIEEGLEAKRELE 360
            L+ IEGVY +    PV+ I +L+N   Y  RPTE CAL+RSLT      YP+ P +E G  A R+L+
Sbjct:    1 LDSIEGVYTEWKMYPVLCIKTLVNYATYVVRPTEGCALIRSLTVDRNGEYPSLPLVEAGKHAVRDLQ 67
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9422.17454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L5W5_9PHAE3.720e-5463.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2D6_ECTSI1.580e-4161.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XV21_HETAK5.640e-738.68Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2DN42_9STRA9.540e-746.27Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9422contigS-dermatodea_contig9422:302..2824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-00_005760.1
Exons6
Model size921
Cds size921
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9422.17454.1prot_S-dermatodea_contig9422.17454.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9422 302..2824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925406.6347861-CDS-S-dermatodea_contig9422:301..5361622925406.6347861-CDS-S-dermatodea_contig9422:301..536Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9422 302..536 -
1694079912.3547401-CDS-S-dermatodea_contig9422:301..5361694079912.3547401-CDS-S-dermatodea_contig9422:301..536Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9422 302..536 -
1622925406.6495385-CDS-S-dermatodea_contig9422:1165..13051622925406.6495385-CDS-S-dermatodea_contig9422:1165..1305Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9422 1166..1305 -
1694079912.3685045-CDS-S-dermatodea_contig9422:1165..13051694079912.3685045-CDS-S-dermatodea_contig9422:1165..1305Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9422 1166..1305 -
1622925406.6698575-CDS-S-dermatodea_contig9422:1552..16651622925406.6698575-CDS-S-dermatodea_contig9422:1552..1665Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9422 1553..1665 -
1694079912.3949983-CDS-S-dermatodea_contig9422:1552..16651694079912.3949983-CDS-S-dermatodea_contig9422:1552..1665Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9422 1553..1665 -
1622925406.685219-CDS-S-dermatodea_contig9422:1954..21261622925406.685219-CDS-S-dermatodea_contig9422:1954..2126Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9422 1955..2126 -
1694079912.407293-CDS-S-dermatodea_contig9422:1954..21261694079912.407293-CDS-S-dermatodea_contig9422:1954..2126Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9422 1955..2126 -
1622925406.6988492-CDS-S-dermatodea_contig9422:2346..25321622925406.6988492-CDS-S-dermatodea_contig9422:2346..2532Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9422 2347..2532 -
1694079912.4186227-CDS-S-dermatodea_contig9422:2346..25321694079912.4186227-CDS-S-dermatodea_contig9422:2346..2532Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9422 2347..2532 -
1622925406.711442-CDS-S-dermatodea_contig9422:2749..28241622925406.711442-CDS-S-dermatodea_contig9422:2749..2824Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9422 2750..2824 -
1694079912.4298232-CDS-S-dermatodea_contig9422:2749..28241694079912.4298232-CDS-S-dermatodea_contig9422:2749..2824Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9422 2750..2824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9422.17454.1

>prot_S-dermatodea_contig9422.17454.1 ID=prot_S-dermatodea_contig9422.17454.1|Name=mRNA_S-dermatodea_contig9422.17454.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=307bp
MDQERKITYEDISVTVFKEGGRALQVRIPVRVHVSHAQSEWVPFLNRVMR
ELELEDIEGVYEDVDGAPVVRIASLLNGGLYFARPTEACALLRSLTRTEP
ERYPAWPSIEEGLEAKRELERCQTYYKDHLLPMSLGGGEDTKVRLCGETA
SHQGKGVFLWKMRVKQGFKCRVYRTPECRPNEVNDTLPMGTTVTVSTDWG
EAMEKHPLRGKGKGKVLWMIDPEEGFVERRPLEDVPDNGKAAATQVVPPT
AFNAEERLEAIRGAASMPEILRAMLRRGAYFKGATSVHDCIDVHRAALRA
AATLMRK
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mRNA from alignment at S-dermatodea_contig9422:302..2824-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9422.17454.1 ID=mRNA_S-dermatodea_contig9422.17454.1|Name=mRNA_S-dermatodea_contig9422.17454.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2523bp|location=Sequence derived from alignment at S-dermatodea_contig9422:302..2824- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATCAGGAGCGGAAAATCACGTACGAAGATATCTCGGTGACGGTCTT
CAAGGAGGGGGGTCGAGCCCTACAGGTATAGGCCGCCGGGTTGCTCTCGA
AAGCATCTTTGCTGGAGGCGGAGTGCCCGTTGACCATGTACTGCTGTACC
TTTTAATGGCGGATGATGCTCGCATTATAGCAAAAGAAAAGGGCACAGAG
CAAGTAGTCGTCAGGATACTTTAGGACACAAGACACGCAGCCTCACACTT
TACGCCCGAATCGGACGCACGCCCTCCCGCCCGCCAAAAAAGGTAAGGAT
CCCGGTGCGCGTCCACGTCTCGCACGCTCAGTCCGAATGGGTGCCTTTCC
TGAATCGCGTCATGCGTGAGCTAGAGCTGGAAGACATTGAAGGCGTTTAC
GAGGACGTGGATGGGGCCCCGGTTGTCCGCATCGCTAGCCTCCTGAATGG
CGGGCTCTACTTCGCAAGACCTACAGAGGTTTGGTTTTGGCTATATAGTT
GGGGAACCACGACACACGCTTACCCTGGAGCTGATGTGCAGAATTTTCGG
GGAGCCGCTGCTTATCTCTCACTCAGTCGCGCTTGGCCTTTGACGACGCT
GAACAAAGCAGAGATAACTTTGGAAGGAAATATAATGAAACCGCCGATGT
TGTGTGCGCAGCGATATTCCAAAGCGAACACCGTCTGTCTCTGGAAAGGC
GTGCGCCCTGTTACGGAGCCTCACGAGAACGGAACCGGAGCGTTACCCGG
CGTGGCCAAGCATCGAGGAGGGACTCGAAGCCAAGCGGGAGCTCGAACGC
TGCCAAACGTACTACAAGGATCACCTGTTGCCCATGTCGTTGGGAGGTGG
CGAAGATACCAAGGTGCGTCGTAGATCGCCCCCTGGCATTAAGTTCTTTG
GTTTGGAGGTATTGGTCGCGCTCCGGTGCACAAATAAGCGCTCCGGGATA
GAACTGCCGGTATGAAGAGACCAATCCGACTAACTGGCCCGCCCACCCGC
TGCCTTCTAAACAAAAACATCGAAAGCAAGGCTAAGCCTCCATGTTCAAA
GTGCTTCTTAGATGTGCATCGTAGCGGTAACGATAAATATTCGCCGGACG
AATGTTTTACATCGTGTGCTCGTAATGTTGGACGCTGTTTCCCCCATAAA
AGGCTGCAGTATGCGGCGAGACTGCCTCTCACCAGGGCAAAGGTGTGTTC
CTCTGGAAGATGAGGGTAAAGCAAGGATTCAAGTGCCGGGTTTACAGGAC
GCCGGAGTGCCGTCCCAACGAGGTGAGCTCCGATATTAGTGAGTTCCGAT
AAAAGTGTGTCAAGTGGATGGCGTTTTTCTCCTTCTTGACGCCGATAGCG
CCCATAAAAAAACTGTCCACCTTGCTGTCCTCAACACGCCTTGGCATGAC
TATTGTAGAGTCGTCAAGAGATACACCATCATATTTAGGATAGCGTTCCA
CTGGGGGTTTTATGCGTTATGGTTTTGTCCCCCGATGGCTCGCACTTCGT
TGTTTAACGTTCCGCGCAGGTTAACGATACCTTGCCGATGGGCACCACTG
TGACGGTGTCGACCGACTGGGGAGAAGCGATGGAAAAGCACCCACTTAGG
GGGAAAGGGAAAGGCAAAGTCCTCTGGATGATCGACCCGGAAGAAGGTTT
CGTAGAAAGGTCAGAAGCGGTTCGAAATGAGGTTTGGGCAAATAATGGAC
TGCCCGCGAACAACAGCCCAACGTTTGTCAAGCAACAGACCCAGCAGGAG
TGAACACGGGCTTCAAGGAGTTATATAAAAAACAAAATTTTGTTCACTCT
ACAGCCCTAACTCACAGGCACACTAAATAGTTCCAGGGGAAGCCGAAAGT
AGATACTTCCTCTACTCACTCACTAAGGTACAATATACGTGCAAGGGGGG
ATATAAGGGGGTACAGCCAAGTAGGGTTTGACAAGAAAGGTACCATCCCC
AAATCGTTAGCCATCATGAACCCCCACGTGGGCATTTTGCGATGCCGACA
CATAGGTCGTGAAACGGCCCCGTTCGTGCTGTGCTACCGCTTGTTTCCTC
TTGTTATCGTCTCCCGAATTCGTGGGTCGGTTCCTTTGAACGGTAAGAAG
AGCCCACCGGCAGGTCGAAACCAGGTCCGGGACAGTAGTGTAGGGTAGCG
CGAACAGTCCACCGAGCCGATCCATCCAAAAATGAAACCCAAAAAAATAA
TAAGGTTGTATTTGTAACTCTGCGGGGAAATGTTTCTGTTCATTTCTCTT
GTAGTCAAGCCCTCTTGGCTGTCTCTCACGCTCGGCAGGAGACCGCTGGA
AGATGTACCAGATAACGGCAAAGCGGCGGCGACACAGGTCGTCCCTCCCA
CCGCATTCAATGCAGAAGAACGCCTGGAAGCTATCCGAGGCGCGGCGTCG
ATGCCCGAGATTCTGCGTGCGATGCTACGCAGGGGCGCATATTTCAAAGG
GGCGACGAGCGTGCACGATTGCATAGACGTGCATCGCGCCGCGCTCCGGG
CGGCCGCCACTCTGATGAGGAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9422:302..2824-

>mRNA_S-dermatodea_contig9422.17454.1 ID=mRNA_S-dermatodea_contig9422.17454.1|Name=mRNA_S-dermatodea_contig9422.17454.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1842bp|location=Sequence derived from alignment at S-dermatodea_contig9422:302..2824- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATCAGGAGCGGAAAATCACGTACGAAGATATCTCGGTGACGGTCTT
CAAGGAGGGGGGTCGAGCCCTACAGATGGATCAGGAGCGGAAAATCACGT
ACGAAGATATCTCGGTGACGGTCTTCAAGGAGGGGGGTCGAGCCCTACAG
GTAAGGATCCCGGTGCGCGTCCACGTCTCGCACGCTCAGTCCGAATGGGT
GCCTTTCCTGAATCGCGTCATGCGTGAGCTAGAGCTGGAAGACATTGAAG
GCGTTTACGAGGACGTGGATGGGGCCCCGGTTGTCCGCATCGCTAGCCTC
CTGAATGGCGGGCTCTACTTCGCAAGACCTACAGAGGTAAGGATCCCGGT
GCGCGTCCACGTCTCGCACGCTCAGTCCGAATGGGTGCCTTTCCTGAATC
GCGTCATGCGTGAGCTAGAGCTGGAAGACATTGAAGGCGTTTACGAGGAC
GTGGATGGGGCCCCGGTTGTCCGCATCGCTAGCCTCCTGAATGGCGGGCT
CTACTTCGCAAGACCTACAGAGGCGTGCGCCCTGTTACGGAGCCTCACGA
GAACGGAACCGGAGCGTTACCCGGCGTGGCCAAGCATCGAGGAGGGACTC
GAAGCCAAGCGGGAGCTCGAACGCTGCCAAACGTACTACAAGGATCACCT
GTTGCCCATGTCGTTGGGAGGTGGCGAAGATACCAAGGTGCGTCGCGTGC
GCCCTGTTACGGAGCCTCACGAGAACGGAACCGGAGCGTTACCCGGCGTG
GCCAAGCATCGAGGAGGGACTCGAAGCCAAGCGGGAGCTCGAACGCTGCC
AAACGTACTACAAGGATCACCTGTTGCCCATGTCGTTGGGAGGTGGCGAA
GATACCAAGGTGCGTCTATGCGGCGAGACTGCCTCTCACCAGGGCAAAGG
TGTGTTCCTCTGGAAGATGAGGGTAAAGCAAGGATTCAAGTGCCGGGTTT
ACAGGACGCCGGAGTGCCGTCCCAACGAGTATGCGGCGAGACTGCCTCTC
ACCAGGGCAAAGGTGTGTTCCTCTGGAAGATGAGGGTAAAGCAAGGATTC
AAGTGCCGGGTTTACAGGACGCCGGAGTGCCGTCCCAACGAGGTTAACGA
TACCTTGCCGATGGGCACCACTGTGACGGTGTCGACCGACTGGGGAGAAG
CGATGGAAAAGCACCCACTTAGGGGGAAAGGGAAAGGCAAAGTCCTCTGG
ATGATCGACCCGGAAGAAGGTTTCGTAGAAAGGTTAACGATACCTTGCCG
ATGGGCACCACTGTGACGGTGTCGACCGACTGGGGAGAAGCGATGGAAAA
GCACCCACTTAGGGGGAAAGGGAAAGGCAAAGTCCTCTGGATGATCGACC
CGGAAGAAGGTTTCGTAGAAAGGAGACCGCTGGAAGATGTACCAGATAAC
GGCAAAGCGGCGGCGACACAGGTCGTCCCTCCCACCGCATTCAATGCAGA
AGAACGCCTGGAAGCTATCCGAGGCGCGGCGTCGATGCCCGAGATTCTGC
GTGCGATGCTACGCAGGGGCGCATATTTCAAAGGGGCGACGAGCGTGCAC
GATTGCATAGACGTGCATCGCGCCGCGCTCCGGGCGGCCGCCACTCTGAT
GAGGAAGGAGACCGCTGGAAGATGTACCAGATAACGGCAAAGCGGCGGCG
ACACAGGTCGTCCCTCCCACCGCATTCAATGCAGAAGAACGCCTGGAAGC
TATCCGAGGCGCGGCGTCGATGCCCGAGATTCTGCGTGCGATGCTACGCA
GGGGCGCATATTTCAAAGGGGCGACGAGCGTGCACGATTGCATAGACGTG
CATCGCGCCGCGCTCCGGGCGGCCGCCACTCTGATGAGGAAG
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