mRNA_S-dermatodea_contig9406.17443.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9406.17443.1
Unique NamemRNA_S-dermatodea_contig9406.17443.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9406.17443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9406contigS-dermatodea_contig9406:6014..7052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925406.0245676-CDS-S-dermatodea_contig9406:6013..62551622925406.0245676-CDS-S-dermatodea_contig9406:6013..6255Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9406 6014..6255 -
1694079911.933488-CDS-S-dermatodea_contig9406:6013..62551694079911.933488-CDS-S-dermatodea_contig9406:6013..6255Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9406 6014..6255 -
1622925406.0375965-CDS-S-dermatodea_contig9406:6919..70521622925406.0375965-CDS-S-dermatodea_contig9406:6919..7052Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9406 6920..7052 -
1694079911.945642-CDS-S-dermatodea_contig9406:6919..70521694079911.945642-CDS-S-dermatodea_contig9406:6919..7052Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9406 6920..7052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9406.17443.1prot_S-dermatodea_contig9406.17443.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9406 6014..7052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9406.17443.1

>prot_S-dermatodea_contig9406.17443.1 ID=prot_S-dermatodea_contig9406.17443.1|Name=mRNA_S-dermatodea_contig9406.17443.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
ICFVSSSLRSAKSPAANWYGGSSTLRITAAVVLSSLVAALLPCPATAHAH
SYTLKTKTCNETFAGTKDAVLVSFCAGGSSCITGPTNLYLDWTLSGVGSY
NEAGFLLETEPTTMVLAISGADAW*
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mRNA from alignment at S-dermatodea_contig9406:6014..7052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9406.17443.1 ID=mRNA_S-dermatodea_contig9406.17443.1|Name=mRNA_S-dermatodea_contig9406.17443.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1039bp|location=Sequence derived from alignment at S-dermatodea_contig9406:6014..7052- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTTGTTTTGTCAGTTCTTCGTTACGCTCGGCCAAGTCCCCTGCTGCCAA
CTGGTATGGAGGGTCTTCTACTCTTAGAATAACCGCTGCCGTTGTGCTAA
GCTCTCTCGTGGCCGCGCTTCTACCCTGCCCCGGTACGTCCGTCTGTTGA
ATAGCGCGTCAGTGTCTCACGCGTTTTCTCCTTGGGTGCCCCCCCCCCCG
TCCCCACTCCGTCCGCTTACTTTTAGCTCGGCCGGTAGTTTCCTCCGCAT
CGTAGCATGTTGAGAGATGTCCCGGGGGCGGTATGTACTTGGCTTGTCGC
TAGACTCTTACTGCATGTAAAGAAGGCGGGGGGGAACGAGGGTTCTGATC
GACTGCGCGATCGGAGTAACGCCGGCGGTTATTTTTTGGGTCATTTTTTT
GGCAGAACCACGACTCACGGGGATGCAGCCGCTCGAATCATTCCCACTTC
GCATCCGACAGCGATATGCCCTTACCGTCTAGTATCGCCGGTGCGTGGCG
CGCGCTATTCTGGCCACGTTGCTTTGAGACGCGCGAGACGGGGTCGCCTT
GAGATTAAAGTGGATCACCCGTCGTCGATATTTCTCGGTTGCCTAGCACA
TACTGGTACACACCTTCGTCTTGTAAGACCGTCCGTTGGCCCCCGCCGTT
GCTTCTTACGTTTGTGTTCGCTGCTGTGGCAATATCGGCGATGCACCACT
TGATTAACCTGGTCAAAATTTGTTCAAACGTGTGGTGTCCTTCGTGGACC
CCGCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTTTCGATCGCGACAGCTA
CGGCACACGCACACAGCTACACGTTGAAAACGAAGACCTGCAACGAGACT
TTCGCTGGAACGAAAGACGCGGTTCTGGTTTCGTTCTGCGCGGGCGGCAG
CAGCTGCATCACTGGCCCAACGAACCTGTACCTCGACTGGACTCTGTCCG
GAGTGGGATCCTACAACGAGGCCGGCTTTCTTCTCGAAACTGAGCCGACC
ACCATGGTTTTAGCCATCTCTGGCGCCGATGCGTGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9406:6014..7052-

>mRNA_S-dermatodea_contig9406.17443.1 ID=mRNA_S-dermatodea_contig9406.17443.1|Name=mRNA_S-dermatodea_contig9406.17443.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig9406:6014..7052- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTTGTTTTGTCAGTTCTTCGTTACGCTCGGCCAAGTCCCCTGCTGCCAA
CTGGTATGGAGGGTCTTCTACTCTTAGAATAACCGCTGCCGTTGTGCTAA
GCTCTCTCGTGGCCGCGCTTCTACCCTGCCCCGATTTGTTTTGTCAGTTC
TTCGTTACGCTCGGCCAAGTCCCCTGCTGCCAACTGGTATGGAGGGTCTT
CTACTCTTAGAATAACCGCTGCCGTTGTGCTAAGCTCTCTCGTGGCCGCG
CTTCTACCCTGCCCCGCTACGGCACACGCACACAGCTACACGTTGAAAAC
GAAGACCTGCAACGAGACTTTCGCTGGAACGAAAGACGCGGTTCTGGTTT
CGTTCTGCGCGGGCGGCAGCAGCTGCATCACTGGCCCAACGAACCTGTAC
CTCGACTGGACTCTGTCCGGAGTGGGATCCTACAACGAGGCCGGCTTTCT
TCTCGAAACTGAGCCGACCACCATGGTTTTAGCCATCTCTGGCGCCGATG
CGTGGTGACTACGGCACACGCACACAGCTACACGTTGAAAACGAAGACCT
GCAACGAGACTTTCGCTGGAACGAAAGACGCGGTTCTGGTTTCGTTCTGC
GCGGGCGGCAGCAGCTGCATCACTGGCCCAACGAACCTGTACCTCGACTG
GACTCTGTCCGGAGTGGGATCCTACAACGAGGCCGGCTTTCTTCTCGAAA
CTGAGCCGACCACCATGGTTTTAGCCATCTCTGGCGCCGATGCGTGGTGA
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