mRNA_S-dermatodea_contig9404.17442.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9404.17442.1
Unique NamemRNA_S-dermatodea_contig9404.17442.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9404.17442.1 vs. uniprot
Match: D8LHW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW4_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 8.720e-21
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:   97 MAEDAVRNKIFEYKANSNLVLTAENRDRRRGDEGTGEVESLHGRMKGKKMGDRVAKERPPE 279
            MAEDAVRNKIFEYKANSNLVLTA+   RRRG+EGTGEVESLHGRMKG+KMGDR+ K   PE
Sbjct:    1 MAEDAVRNKIFEYKANSNLVLTADRDSRRRGEEGTGEVESLHGRMKGQKMGDRLDKGNKPE 61
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BLAST of mRNA_S-dermatodea_contig9404.17442.1 vs. uniprot
Match: A0A835YNN3_9STRA (Sec63 Brl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN3_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.450e-13
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:   97 MAEDAVRNKIFEYKANSNLVLTAENRDRRRGDEGTGEVESLHGRMKGKKMGDRVAKERPPE 279
            MAE+  RN+ FEYKANSNLVL AE R +RRG++GTGEVESL G+ K  KMGDR+   RPPE
Sbjct:    1 MAEEHARNRQFEYKANSNLVLQAE-RGKRRGEDGTGEVESLWGKTKHMKMGDRLTTARPPE 60
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BLAST of mRNA_S-dermatodea_contig9404.17442.1 vs. uniprot
Match: F0Y9C7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9C7_AURAN)

HSP 1 Score: 69.3 bits (168), Expect = 1.000e-11
Identity = 35/61 (57.38%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:   97 MAEDAVRNKIFEYKANSNLVLTAENRDRRRGDEGTGEVESLHGRMKGKKMGDRVAKERPPE 279
            MAE+  RN+ +EY+ANSNLVL A+  +RRR DE TGEVESL G+M G+KMGD++ + + P+
Sbjct:    1 MAEEFARNRQYEYRANSNLVLEADRENRRRTDEPTGEVESLFGKMGGQKMGDKLGRNKAPD 61
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BLAST of mRNA_S-dermatodea_contig9404.17442.1 vs. uniprot
Match: A0A8J2SIM1_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIM1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.270e-10
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   97 MAEDAVRNKIFEYKANSNLVLTAENRDRRRGDEGTGEVESLHGRMKGKKMGDRVAKERPPE 279
            MAE+  RN+ +EY+ANSNLVL A+   RRR DE TGEVESL GRM  ++MGD+V   R P+
Sbjct:    1 MAEEFARNRQYEYRANSNLVLEADRETRRRTDEPTGEVESLWGRMGAQRMGDKVRGGRAPD 61
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BLAST of mRNA_S-dermatodea_contig9404.17442.1 vs. uniprot
Match: A0A2P6V4J1_9CHLO (U5 small nuclear ribonucleo 200 kDa helicase-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V4J1_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 4.550e-8
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:  100 AEDAVRNKIFEYKANSNLVLTAENRDRRRGDEGTGEVESLHGRMKGKKMGDRVAKERP 273
            AED  R K ++YKANSNLVLTAE R    G E  G  ESL G+MK  KMGDRV +ERP
Sbjct:    9 AEDFARFKQYDYKANSNLVLTAEQRTSA-GREPDGSAESLWGKMKSSKMGDRVQRERP 65
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BLAST of mRNA_S-dermatodea_contig9404.17442.1 vs. uniprot
Match: A0A2T7PAU9_POMCA (Uncharacterized protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PAU9_POMCA)

HSP 1 Score: 57.4 bits (137), Expect = 1.590e-7
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:   97 MAEDAVRNKIFEYKANSNLVLTAENR--DRRRGDEGTGEVESLHGRMKGKKMGDRVAKERPPE 279
            MA+   R+  +EYKANSNLVL+ +    DRR  DE TGEV SL G+++G +MGD+  K +PP+
Sbjct:    1 MADATARSLQYEYKANSNLVLSVDRSLIDRRARDEATGEVMSLTGKLQGTRMGDKAEKTKPPQ 63
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BLAST of mRNA_S-dermatodea_contig9404.17442.1 vs. uniprot
Match: A0A2P6TQ19_CHLSO (U5 small nuclear ribonucleo 200 kDa helicase-like n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TQ19_CHLSO)

HSP 1 Score: 57.4 bits (137), Expect = 1.590e-7
Identity = 38/58 (65.52%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:  100 AEDAVRNKIFEYKANSNLVLTAENRDRRRGDEGTGEVESLHGRMKGKKMGDRVAKERP 273
            AE   R K F+YKANSNLVLTAE R    G E  G  E+L GRMKGK MGDRVA+ERP
Sbjct:   10 AEALARLKQFDYKANSNLVLTAEQRTSA-GREPDGSAETLWGRMKGK-MGDRVARERP 65
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BLAST of mRNA_S-dermatodea_contig9404.17442.1 vs. uniprot
Match: A0A5J4XFP3_9CHLO (U5 small nuclear ribonucleo helicase-like protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XFP3_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 2.170e-7
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   97 MAEDAVRNKIFEYKANSNLVLTAENRDRRRGDEGTGEVESLHGRMKGKKMGDRVAKERP 273
            MAE   R + ++Y+ANSNLVLTAE R R    E +GE ESLHGRM+GK MGDRV   +P
Sbjct:    1 MAEREARQRQYDYRANSNLVLTAETRTREAA-EPSGEPESLHGRMRGK-MGDRVQHAKP 57
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BLAST of mRNA_S-dermatodea_contig9404.17442.1 vs. uniprot
Match: A0A482RM62_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RM62_9ARCH)

HSP 1 Score: 54.3 bits (129), Expect = 4.420e-7
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   97 MAEDAVRNKIFEYKANSNLVLTAENRDRRRGDEGTGEVESLHGRMKGKKMGDRVAKERPP 276
            MA++ +R+K++EY ANSNLVL AE    RR D G GEVE+L GR    +MGD++   + P
Sbjct:    1 MADEFLRSKLYEYGANSNLVLEAERDGSRRKDAGKGEVETLRGRTNTFRMGDKLVGTKQP 60
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BLAST of mRNA_S-dermatodea_contig9404.17442.1 vs. uniprot
Match: A0A7J7JY94_BUGNE (SNRNP200 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JY94_BUGNE)

HSP 1 Score: 55.1 bits (131), Expect = 4.520e-7
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   97 MAEDAVRNKIFEYKANSNLVLTAENR--DRRRGDEGTGEVESLHGRMKGKKMGDRVAKERP 273
            MA+ A R   +EYKANSNLVLTA+     RR  DE TGEV SL G ++G +MGDR  + +P
Sbjct:    1 MADAAARQLQYEYKANSNLVLTADRSLSSRRDKDEATGEVLSLQGHIRGTRMGDRALRTKP 61
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9404.17442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHW4_ECTSI8.720e-2181.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YNN3_9STRA4.450e-1367.21Sec63 Brl domain-containing protein n=1 Tax=Tribon... [more]
F0Y9C7_AURAN1.000e-1157.38Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SIM1_9STRA2.270e-1059.02Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A2P6V4J1_9CHLO4.550e-862.07U5 small nuclear ribonucleo 200 kDa helicase-like ... [more]
A0A2T7PAU9_POMCA1.590e-750.79Uncharacterized protein n=2 Tax=Pomacea canalicula... [more]
A0A2P6TQ19_CHLSO1.590e-765.52U5 small nuclear ribonucleo 200 kDa helicase-like ... [more]
A0A5J4XFP3_9CHLO2.170e-759.32U5 small nuclear ribonucleo helicase-like protein ... [more]
A0A482RM62_9ARCH4.420e-750.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7J7JY94_BUGNE4.520e-754.10SNRNP200 n=1 Tax=Bugula neritina TaxID=10212 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9404contigS-dermatodea_contig9404:4121..6525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue4.7e-18
Seed eggNOG ortholog2880.D8LHW4
Preferred namebrr2
KEGG koko:K12854
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000375,GO:0000377,GO:0000388,GO:0000393,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0070035,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140098,GO:1901360,GO:1990904
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0951@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925405.9875503-CDS-S-dermatodea_contig9404:4120..42611622925405.9875503-CDS-S-dermatodea_contig9404:4120..4261Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9404 4121..4261 +
1694079911.8988993-CDS-S-dermatodea_contig9404:4120..42611694079911.8988993-CDS-S-dermatodea_contig9404:4120..4261Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9404 4121..4261 +
1622925405.9991202-CDS-S-dermatodea_contig9404:6387..65251622925405.9991202-CDS-S-dermatodea_contig9404:6387..6525Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9404 6388..6525 +
1694079911.9132805-CDS-S-dermatodea_contig9404:6387..65251694079911.9132805-CDS-S-dermatodea_contig9404:6387..6525Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9404 6388..6525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9404.17442.1prot_S-dermatodea_contig9404.17442.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9404 4121..6525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9404.17442.1

>prot_S-dermatodea_contig9404.17442.1 ID=prot_S-dermatodea_contig9404.17442.1|Name=mRNA_S-dermatodea_contig9404.17442.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp
AALWQREPVPKRAGRSCSSCSLRRSGQRRSATMAEDAVRNKIFEYKANSN
LVLTAENRDRRRGDEGTGEVESLHGRMKGKKMGDRVAKERPPE
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mRNA from alignment at S-dermatodea_contig9404:4121..6525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9404.17442.1 ID=mRNA_S-dermatodea_contig9404.17442.1|Name=mRNA_S-dermatodea_contig9404.17442.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2405bp|location=Sequence derived from alignment at S-dermatodea_contig9404:4121..6525+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGCGCTGTGGCAGAGAGAGCCGGTCCCAAAAAGAGCGGGAAGAAGCTG
TAGCTCGTGCTCCCTTCGCAGGAGTGGGCAGAGGCGAAGCGCAACCATGG
CGGAAGATGCGGTTCGCAACAAGATCTTCGAGTACAAAGCGGTGAGTGCC
CTCTCCCCTTCTTCTGCGGTGATGGCAGCCTGCCTGCATTGGATCGAGGC
ACTTGGGATAGGCTAACTGCCGCGGGGCGCCCAAGTAGCGCCTTTGCTGT
CGCAAGCAATCCAGGAACCCCGAGCAAGTGTCGGGGCCGTGCGTCTTGCC
GCTATGTTGTGGGCGAGGGCACGCCGTTGATTTCCTGTTAGCGTTGGTTG
GACATACTGGTGGTGCAATGTGGATGCTCCCAAGCTGCAAGGTCTCTCTC
AAGCTGGCATTCGGGCATCCATCGGGATGGATCATACCTGCCTTAGGCGT
CTGTGCTGCTGGGTTGCTTTCAAAATAACTCTAAATAACTAACTGTCGGT
ATGCAGTCGCGTGCTCGGCGTCGGTTGCCAGGCAGCCGACGCTTGCCCTG
CTCTCGTTATGTTTGTGCACAGCCAGCTTCCCGTATGAAATATCGTACAA
CATTGATTTATATAATTGCTATTGCTATTGCTCCTATTTTGCTGTGTGTG
TCGCCTCTCAAGCTCTCAAGAGCTGTTTCATGGTTTGTACTCGACAGAGT
TGATACCGAGCAGCACACAACCCTATCTAGTCTGCCGATTGCTGATCTGC
TGATTGCTGTCGGAACTCTGAACCTCGGGCTGACTAAAGCTCTACGTATC
GATGCAATCAGCACCGGCAGGCTTCGAGGATCGCTTTCGTTCGATTTTGC
TCTGCCCCGGCGTGTCGTTGACATTGACTGATTTACTTCCATCGTATAAT
ATGACTGGTAGCTCTCTTGTACGCACATGATACAGCGAGTATAAAAACAC
AGAGCTCATCACGCAGCACGATTCACGATAGGCTCCTGAGATGGATGCAA
GCATGAAAACCGTAACGGCAGGCTTCGAGGTTCGCTCATTCGTCCGGGAT
GTGCCCGGAGTGTCCCTCCTTTATGCTATACTTGTCATGGTGTGCTAAAC
TCACATTATCATAGCAATCATAGCATAGCATGCGTCTTACGGACGTACAA
GGCTCTCCAAACTCCACACCATACAGAACAGAGAACAGCAGTCGCACAAG
TATTTCAGTATGTACTGTAGTTCATATAGAGCTCCAGTTTTTTTTTTTTT
TTTAGATTTGGGATTATAAGATATGATGCGAAGGAAATACTGTACCTATT
ATAGTGTCCCCCACACGCACATGCCGGGGAGGTTTCCAGCACGCTCGGCC
GACTCTGATCGCCTCGGAACGGCGACATGACCGAATGAGTAATTGCTAGT
GCAGTTTTCGTGGTATGCATATGATGCGCTATCATACTTGTGTTGTACAA
CTATTGTTGTCCTGTTGTCGTTGAGCTCTGGGCCCATGGTGCTCCTCACG
ACACCCTGAAAAAGGCAATCTTGCTGAGTCTATTTAGTGCTGAATATGAA
GATGGTATCGGACACTCTATTGTTGGCATCGACGACGGGACCATCATCGT
GTCCTAACCTACAGATAGTATAACCTACAGAGTAAAACCTACAGTATAAA
ATAACCATACTAACCTACAGCAGTAGAACCTTTGTCTACATTTTTCTGAG
GTCTCGATTTTCAATCGCAACATGTAAGGAGATGGACGCTAATGGACATG
TCGTGAACCTCACTCTAGCTGCCGCCGCGCGATCGTGAAACTAGACCTAC
CGGGGTCGAGGACATGTGTACGGCTGTGTACGGGCGTGTGCGTGTGTGTG
CGGGTGCGTGGTCAGTCAGTGAATCGACCAGGCAAGCAATCAATTGATCG
ATCAAACAGTCAATCAAGCAATCAACCGATTAGTCGGTTGAACTATTATT
AAAGTTCGATTGAACAATCAGGCACCCAATACAGCCATCCATCCATCAAT
GAACCGATTAATCTTACTCAATCAACCAATCAATCAATCAATCGACCAGC
CTACTGTACCAACTGTAGAGCTATTCTAGTCAATTAACCAATCATCCATT
AATATCATGAAACCAAAATGCAACATTTTTGTTCACGACCCCCTTCCGCA
GCTCTCTGTCTCCGCTTCCTCTAATTTTCCATCTTAGCGTTACACGCGAT
TACGGCCCCCAAAACCACAACACGGATCAAACTAATTGGTGTTTGCCGTT
GGCGCCTCCTTTCGCAGAACTCCAACCTTGTGCTTACTGCCGAGAACCGG
GATCGGCGTCGGGGAGATGAGGGCACCGGGGAGGTGGAATCCTTGCATGG
GCGCATGAAAGGAAAAAAAATGGGGGACAGGGTCGCAAAGGAACGCCCGC
CGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9404:4121..6525+

>mRNA_S-dermatodea_contig9404.17442.1 ID=mRNA_S-dermatodea_contig9404.17442.1|Name=mRNA_S-dermatodea_contig9404.17442.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig9404:4121..6525+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGCGCTGTGGCAGAGAGAGCCGGTCCCAAAAAGAGCGGGAAGAAGCTG
TAGCTCGTGCTCCCTTCGCAGGAGTGGGCAGAGGCGAAGCGCAACCATGG
CGGAAGATGCGGTTCGCAACAAGATCTTCGAGTACAAAGCGGCAGCGCTG
TGGCAGAGAGAGCCGGTCCCAAAAAGAGCGGGAAGAAGCTGTAGCTCGTG
CTCCCTTCGCAGGAGTGGGCAGAGGCGAAGCGCAACCATGGCGGAAGATG
CGGTTCGCAACAAGATCTTCGAGTACAAAGCGAACTCCAACCTTGTGCTT
ACTGCCGAGAACCGGGATCGGCGTCGGGGAGATGAGGGCACCGGGGAGGT
GGAATCCTTGCATGGGCGCATGAAAGGAAAAAAAATGGGGGACAGGGTCG
CAAAGGAACGCCCGCCGGAGAACTCCAACCTTGTGCTTACTGCCGAGAAC
CGGGATCGGCGTCGGGGAGATGAGGGCACCGGGGAGGTGGAATCCTTGCA
TGGGCGCATGAAAGGAAAAAAAATGGGGGACAGGGTCGCAAAGGAACGCC
CGCCGGAG
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