mRNA_S-dermatodea_contig94018.17440.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig94018.17440.1
Unique NamemRNA_S-dermatodea_contig94018.17440.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig94018.17440.1 vs. uniprot
Match: A0A6H5L4H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H5_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 8.810e-27
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    4 MMVLNRLGFDHMSQALTSSFQVQEMADYLMFSCRSPCFFGASPSPDGHVHGVWFHNAEERGRAHTLLNR 210
            MMVLNRLGFDHMSQ +T SF+V  + DYLMFSC++PC+FG  PSP+GH+HGVWFH+ +ER +   LL R
Sbjct:   75 MMVLNRLGFDHMSQGITQSFKVHRLEDYLMFSCKTPCYFGDKPSPNGHLHGVWFHSPDERDQMQALLER 143
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BLAST of mRNA_S-dermatodea_contig94018.17440.1 vs. uniprot
Match: D7G2V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V2_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 6.570e-26
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    4 MMVLNRLGFDHMSQALTSSFQVQEMADYLMFSCRSPCFFGASPSPDGHVHGVWFHNAEERGRAHTLLNR 210
            MMVLNRLGFDHMSQ +T SF+V  + DYLMFSC++PC+FG  PSP+GH+HGVWFH+ +ER +   LL R
Sbjct:  101 MMVLNRLGFDHMSQGITQSFKVHRLEDYLMFSCKTPCYFGDKPSPNGHLHGVWFHSPDERDQMQALLER 169
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94018.17440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4H5_9PHAE8.810e-2765.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2V2_ECTSI6.570e-2665.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig94018contigS-dermatodea_contig94018:259..468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue1.5e-21
Seed eggNOG ortholog2880.D7G2V2
Preferred nameDCP1A
KEGG koko:K12610,ko:K12611,ko:K12612,ko:K12655
KEGG Pathwayko03018,ko04622,map03018,map04622
KEGG ModuleM00395
GOsGO:0000003,GO:0000184,GO:0000288,GO:0000290,GO:0000291,GO:0000578,GO:0000932,GO:0000956,GO:0002119,GO:0002164,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005737,GO:0005829,GO:0005845,GO:0006139,GO:0006355,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006979,GO:0007028,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007179,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007316,GO:0007350,GO:0007351,GO:0007389,GO:0007568,GO:0008047,GO:0008092,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008298,GO:0008340,GO:0008358,GO:0008595,GO:0009056,GO:0009057,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009628,GO:0009719,GO:0009790,GO:0009791,GO:0009798,GO:0009880,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009948,GO:0009952,GO:0009987,GO:0009994,GO:0010033,GO:0010259,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010603,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019094,GO:0019219,GO:0019222,GO:0019439,GO:0019894,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030234,GO:0031047,GO:0031086,GO:0031087,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034428,GO:0034518,GO:0034613,GO:0034641,GO:0034655,GO:0035194,GO:0035195,GO:0035282,GO:0035770,GO:0036464,GO:0040012,GO:0040029,GO:0042221,GO:0042802,GO:0043085,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043487,GO:0043488,GO:0043928,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0044703,GO:0045451,GO:0045495,GO:0045893,GO:0045935,GO:0046483,GO:0046700,GO:0048468,GO:0048469,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051641,GO:0051704,GO:0051716,GO:0060147,GO:0060148,GO:0060255,GO:0060293,GO:0060810,GO:0060811,GO:0060964,GO:0060966,GO:0060968,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071559,GO:0071560,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0098552,GO:0098562,GO:0098745,GO:0098772,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902115,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1903608,GO:1990521,GO:1990904,GO:2000112,GO:2000637,GO:2001141
EggNOG free text desc.mRNA-decapping enzyme
EggNOG OGsKOG2868@1,KOG2868@2759
EC3.4.19.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03019,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionmRNA decapping complex protein
Ec32 orthologEc-07_005620.1
Exons1
Model size210
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925405.8841164-CDS-S-dermatodea_contig94018:258..4651622925405.8841164-CDS-S-dermatodea_contig94018:258..465Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94018 259..465 -
1694079911.8270955-CDS-S-dermatodea_contig94018:258..4651694079911.8270955-CDS-S-dermatodea_contig94018:258..465Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94018 259..465 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925405.895729-UTR-S-dermatodea_contig94018:465..4681622925405.895729-UTR-S-dermatodea_contig94018:465..468Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig94018 466..468 -
1694079911.8417826-UTR-S-dermatodea_contig94018:465..4681694079911.8417826-UTR-S-dermatodea_contig94018:465..468Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig94018 466..468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig94018.17440.1prot_S-dermatodea_contig94018.17440.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig94018 259..465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig94018.17440.1

>prot_S-dermatodea_contig94018.17440.1 ID=prot_S-dermatodea_contig94018.17440.1|Name=mRNA_S-dermatodea_contig94018.17440.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=69bp
MMVLNRLGFDHMSQALTSSFQVQEMADYLMFSCRSPCFFGASPSPDGHVH
GVWFHNAEERGRAHTLLNR
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mRNA from alignment at S-dermatodea_contig94018:259..468-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig94018.17440.1 ID=mRNA_S-dermatodea_contig94018.17440.1|Name=mRNA_S-dermatodea_contig94018.17440.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at S-dermatodea_contig94018:259..468- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGATGATGGTTTTGAACCGACTGGGTTTCGACCACATGTCGCAGGCGTT
AACGTCGTCTTTTCAGGTGCAGGAGATGGCGGACTACCTCATGTTCTCCT
GTCGATCGCCGTGCTTCTTCGGGGCGTCGCCTTCGCCCGACGGGCATGTC
CACGGGGTGTGGTTCCATAACGCGGAGGAGCGGGGACGAGCGCACACTCT
GCTGAACCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig94018:259..468-

>mRNA_S-dermatodea_contig94018.17440.1 ID=mRNA_S-dermatodea_contig94018.17440.1|Name=mRNA_S-dermatodea_contig94018.17440.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at S-dermatodea_contig94018:259..468- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGTTTTGAACCGACTGGGTTTCGACCACATGTCGCAGGCGTTAAC
GTCGTCTTTTCAGGTGCAGGAGATGGCGGACTACCTCATGTTCTCCTGTC
GATCGCCGTGCTTCTTCGGGGCGTCGCCTTCGCCCGACGGGCATGTCCAC
GGGGTGTGGTTCCATAACGCGGAGGAGCGGGGACGAGCGCACACTCTGCT
GAACCGGATGATGGTTTTGAACCGACTGGGTTTCGACCACATGTCGCAGG
CGTTAACGTCGTCTTTTCAGGTGCAGGAGATGGCGGACTACCTCATGTTC
TCCTGTCGATCGCCGTGCTTCTTCGGGGCGTCGCCTTCGCCCGACGGGCA
TGTCCACGGGGTGTGGTTCCATAACGCGGAGGAGCGGGGACGAGCGCACA
CTCTGCTGAACCGG
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