mRNA_S-dermatodea_contig940.17437.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig940.17437.1
Unique NamemRNA_S-dermatodea_contig940.17437.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig940.17437.1 vs. uniprot
Match: D7FZX3_ECTSI (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX3_ECTSI)

HSP 1 Score: 345 bits (884), Expect = 1.670e-110
Identity = 169/190 (88.95%), Postives = 175/190 (92.11%), Query Frame = 1 
Query:    1 RGYYYARQAVIPGGSSVPVLDINDCADVMMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCRRASLLEGTGWLEQMLIKMEKGEADAREIPMLEEISRAIEGHTICALGDAAAWPVQGLIRRFQPVIEERIAGGPELYQSEKGKYFQGSWSGEPFNNKEWVERHGDGKTYSRS 570
            RG +   QAVIPGGSSVPVLDINDCADVMMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCR     EGTGWLEQML+KMEKGEAD REIPMLEEISR+IEGHTICALGDAAAWPVQGLIRRFQPVIEERIAGGPE YQSEKGKYFQ +WSGEPF NK WV++HGDGK YSRS
Sbjct:  327 RGGWDNLQAVIPGGSSVPVLDINDCADVMMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCR-----EGTGWLEQMLVKMEKGEADTREIPMLEEISRSIEGHTICALGDAAAWPVQGLIRRFQPVIEERIAGGPEQYQSEKGKYFQEAWSGEPFKNKAWVDQHGDGKAYSRS 511
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BLAST of mRNA_S-dermatodea_contig940.17437.1 vs. uniprot
Match: A0A7S3MEF9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEF9_9STRA)

HSP 1 Score: 283 bits (723), Expect = 1.290e-88
Identity = 141/188 (75.00%), Postives = 157/188 (83.51%), Query Frame = 1 
Query:    1 RGYYYARQAVIPGGSSVPVLDINDCADVMMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCRRASLLEGTGWLEQMLIKMEKGEADAREIPMLEEISRAIEGHTICALGDAAAWPVQGLIRRFQPVIEERIAGGPELYQSEKGKYFQGSWSGEPFNNKEWVERHGDGKTYS 564
            RG +   QAVIPGGSSVPVLD NDC +VMMDFDDLK AGS LGTAAVTVMDKSVDMIAAIRRL+HFY HESCGQCTPCR     EGTGW+E +L KME G+AD REIPMLEEISRAIEGHTICALGDAAAWPVQGLIRRF+ V+E+RI   PE Y +EK KYFQ +WSGE F N +W ++HGDGK ++
Sbjct:  157 RGGWSNLQAVIPGGSSVPVLDENDCQNVMMDFDDLKAAGSALGTAAVTVMDKSVDMIAAIRRLSHFYTHESCGQCTPCR-----EGTGWMETILNKMEHGDADLREIPMLEEISRAIEGHTICALGDAAAWPVQGLIRRFKYVMEDRI-NHPEKYAAEKDKYFQRAWSGEQFKNLKWADQHGDGKNFT 338
[Close]
BLAST of mRNA_S-dermatodea_contig940.17437.1 vs. uniprot
Match: A0A835ZC73_9STRA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC73_9STRA)

HSP 1 Score: 286 bits (731), Expect = 1.010e-87
Identity = 140/187 (74.87%), Postives = 154/187 (82.35%), Query Frame = 1 
Query:    1 RGYYYARQAVIPGGSSVPVLDINDCADVMMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCRRASLLEGTGWLEQMLIKMEKGEADAREIPMLEEISRAIEGHTICALGDAAAWPVQGLIRRFQPVIEERIAGGPELYQSEKGKYFQGSWSGEPFNNKEWVERHGDGKTY 561
            RG +   QAVIPGGSSVPVLDINDC DV+MDFDDLK  GSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCR     EGT WLEQ+L++ME GEAD REIPMLEEI+R IEGHTICALGDAAAWPVQGLIRRFQ V+E+RI         +  +YFQ +WSG+PF N +W + HGDGKTY
Sbjct:  319 RGGWDQLQAVIPGGSSVPVLDINDCKDVLMDFDDLKSRGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCR-----EGTNWLEQLLVRMESGEADKREIPMLEEITRQIEGHTICALGDAAAWPVQGLIRRFQHVVEDRIDNADTF---DPAQYFQHAWSGQPFTNADWTKAHGDGKTY 497
[Close]
BLAST of mRNA_S-dermatodea_contig940.17437.1 vs. uniprot
Match: A0A7S3MFV3_9STRA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFV3_9STRA)

HSP 1 Score: 283 bits (723), Expect = 1.790e-86
Identity = 141/188 (75.00%), Postives = 157/188 (83.51%), Query Frame = 1 
Query:    1 RGYYYARQAVIPGGSSVPVLDINDCADVMMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCRRASLLEGTGWLEQMLIKMEKGEADAREIPMLEEISRAIEGHTICALGDAAAWPVQGLIRRFQPVIEERIAGGPELYQSEKGKYFQGSWSGEPFNNKEWVERHGDGKTYS 564
            RG +   QAVIPGGSSVPVLD NDC +VMMDFDDLK AGS LGTAAVTVMDKSVDMIAAIRRL+HFY HESCGQCTPCR     EGTGW+E +L KME G+AD REIPMLEEISRAIEGHTICALGDAAAWPVQGLIRRF+ V+E+RI   PE Y +EK KYFQ +WSGE F N +W ++HGDGK ++
Sbjct:  324 RGGWSNLQAVIPGGSSVPVLDENDCQNVMMDFDDLKAAGSALGTAAVTVMDKSVDMIAAIRRLSHFYTHESCGQCTPCR-----EGTGWMETILNKMEHGDADLREIPMLEEISRAIEGHTICALGDAAAWPVQGLIRRFKYVMEDRI-NHPEKYAAEKDKYFQRAWSGEQFKNLKWADQHGDGKNFT 505
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BLAST of mRNA_S-dermatodea_contig940.17437.1 vs. uniprot
Match: A0A7S1TYU1_9STRA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYU1_9STRA)

HSP 1 Score: 270 bits (691), Expect = 4.920e-82
Identity = 138/188 (73.40%), Postives = 152/188 (80.85%), Query Frame = 1 
Query:    1 RGYYYARQAVIPGGSSVPVLDINDCADVMMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCRRASLLEGTGWLEQMLIKMEKGEADAREIPMLEEISRAIEGHTICALGDAAAWPVQGLIRRFQPVIEERIAGGPELYQSEKGKYFQGSWSGEPFNNKEWVERHGDGKTYS 564
            RG +   QAVIPGGSSVPVLD NDC  VMMDFDDLK  GSGLGTAAVTVMDKSVDM+AAIRRLAHFYKHESCGQCTPCR     EGTGWLE++L++ME G AD  EI MLEEISR IEGHTICALGDAAAWPVQGLIRRFQ VIE+RI   PE + ++   +FQ +WSGEPF N EW   HG GKT++
Sbjct:  302 RGGWSNLQAVIPGGSSVPVLDENDCQSVMMDFDDLKAKGSGLGTAAVTVMDKSVDMVAAIRRLAHFYKHESCGQCTPCR-----EGTGWLEEVLVRMEAGNADHGEIAMLEEISRQIEGHTICALGDAAAWPVQGLIRRFQHVIEDRI-DNPEGFDADA--HFQRAWSGEPFANGEWANAHGMGKTFA 481
[Close]
BLAST of mRNA_S-dermatodea_contig940.17437.1 vs. uniprot
Match: A0A7R9ZM29_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZM29_9STRA)

HSP 1 Score: 251 bits (640), Expect = 2.310e-78
Identity = 124/190 (65.26%), Postives = 148/190 (77.89%), Query Frame = 1 
Query:    1 RGYYYARQAVIPGGSSVPVLDINDCADVMMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCRRASLLEGTGWLEQMLIKMEKGEADAREIPMLEEISRAIEGHTICALGDAAAWPVQGLIRRFQPVIEERIAGGPELYQSEKGKYFQGSWSGEPFNNKEWVERHGDGKTYSRS 570
            R  + + QA IPGGSSVPVL+ + C + +M+FDDL+  GSGLGTAAVT+ D SVDM+ AIRRL+HFYKHESCGQCTPCR     EGT WLE +LI+MEKG+AD REIPMLEEISR IEG TICALGDAAAWPVQGL+R F+  IE+RI   P+ + +E    FQ SWSG+PF N EWV+ HGDG  YS++
Sbjct:    5 RNGWNSLQACIPGGSSVPVLNRDQCDEALMEFDDLRSKGSGLGTAAVTMFDDSVDMVGAIRRLSHFYKHESCGQCTPCR-----EGTSWLEDVLIRMEKGDADKREIPMLEEISRQIEGQTICALGDAAAWPVQGLLRHFKKNIEDRI-DNPDSFDAEAA--FQKSWSGDPFANDEWVKEHGDGLAYSKA 186
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BLAST of mRNA_S-dermatodea_contig940.17437.1 vs. uniprot
Match: A0A7S2V010_9STRA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V010_9STRA)

HSP 1 Score: 260 bits (665), Expect = 6.380e-78
Identity = 133/187 (71.12%), Postives = 150/187 (80.21%), Query Frame = 1 
Query:    1 RGYYYARQAVIPGGSSVPVLDINDCADVMMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCRRASLLEGTGWLEQMLIKMEKGEADAREIPMLEEISRAIEGHTICALGDAAAWPVQGLIRRFQPVIEERIAGGPELYQSEKGKYFQGSWSGEPFNNKEWVERHGDGKTY 561
            RG +   QAVIPGGSSVPVL+  D ++ +MDFDDLK  GSGLGTAAVTVMDKSVDM+AAIRRLAHFYKHESCGQCTPCR     EGT WLE++L++MEKG+AD REI MLEEISR IEGHTICALGDAAAWPVQGLI+ FQ VIEERI   PE +  E   +FQ +WSG  F NK+WV+ HG GK Y
Sbjct:  323 RGGWDNLQAVIPGGSSVPVLNFQDSSEALMDFDDLKARGSGLGTAAVTVMDKSVDMVAAIRRLAHFYKHESCGQCTPCR-----EGTPWLEKILLRMEKGDADKREIAMLEEISRQIEGHTICALGDAAAWPVQGLIKSFQHVIEERI-DNPEGFDPEA--HFQKAWSGSEFVNKDWVKAHGGGKAY 501
[Close]
BLAST of mRNA_S-dermatodea_contig940.17437.1 vs. uniprot
Match: A0A7S3K1X1_9STRA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1X1_9STRA)

HSP 1 Score: 258 bits (660), Expect = 2.250e-77
Identity = 128/184 (69.57%), Postives = 150/184 (81.52%), Query Frame = 1 
Query:    1 RGYYYARQAVIPGGSSVPVLDINDCADVMMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCRRASLLEGTGWLEQMLIKMEKGEADAREIPMLEEISRAIEGHTICALGDAAAWPVQGLIRRFQPVIEERIAGGPELYQSEKGKYFQGSWSGEPFNNKEWVERHGDG 552
            RG +   QAVIPGGSSVP+L +++C++ +MDFDDLK  GSGLGTAAVTVMDKSVDMIAAIRRL+HFY HESCGQCTPCR     EGT WLEQML++MEKG+AD REI MLEEI+R IEGHTICALGDAAAWPVQGLIRRF+ V+EERI   P  +  +    FQ +WSG+PFNN EW +++G G
Sbjct:  305 RGGWDNLQAVIPGGSSVPILPLDECSEALMDFDDLKSRGSGLGTAAVTVMDKSVDMIAAIRRLSHFYSHESCGQCTPCR-----EGTSWLEQMLMRMEKGQADKREIDMLEEITRQIEGHTICALGDAAAWPVQGLIRRFKNVMEERI-NDPTAFDHQAA--FQKAWSGKPFNNHEWTQQYGAG 480
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BLAST of mRNA_S-dermatodea_contig940.17437.1 vs. uniprot
Match: A0A7S4LQB8_OXYMA (Hypothetical protein n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S4LQB8_OXYMA)

HSP 1 Score: 254 bits (648), Expect = 2.880e-77
Identity = 124/188 (65.96%), Postives = 148/188 (78.72%), Query Frame = 1 
Query:    1 RGYYYARQAVIPGGSSVPVLDINDCADVMMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCRRASLLEGTGWLEQMLIKMEKGEADAREIPMLEEISRAIEGHTICALGDAAAWPVQGLIRRFQPVIEERIAGGPELYQSEKGKYFQGSWSGEPFNNKEWVERHGDGKTYS 564
            R  + + QA IPGGSSVPVL+ + C + +M+FDDL+  GSGLGTAAVT+ D +VDM+ AIRRL+HFYKHESCGQCTPCR     EGTGWLE +LI+MEKG+AD REIPMLEEISR IEGHTICALGDAAAWPVQGL+R F+  IE+RI   PE +  E    FQ +WSG+PF+N  W + HGDGKTY+
Sbjct:  169 RNGWESVQACIPGGSSVPVLNKDQCGEALMEFDDLRAKGSGLGTAAVTMFDNTVDMVGAIRRLSHFYKHESCGQCTPCR-----EGTGWLEDILIRMEKGDADKREIPMLEEISRQIEGHTICALGDAAAWPVQGLLRHFKKDIEDRI-DNPEGFDHEAA--FQKAWSGDPFDNNAWTKEHGDGKTYA 348
[Close]
BLAST of mRNA_S-dermatodea_contig940.17437.1 vs. uniprot
Match: F0Y5S2_AURAN (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (Fragment) n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0Y5S2_AURAN)

HSP 1 Score: 257 bits (657), Expect = 3.980e-77
Identity = 132/185 (71.35%), Postives = 147/185 (79.46%), Query Frame = 1 
Query:    1 RGYYYARQAVIPGGSSVPVLDINDCADVMMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCRRASLLEGTGWLEQMLIKMEKGEADAREIPMLEEISRAIEGHTICALGDAAAWPVQGLIRRFQPVIEERIAGGPELYQSEKGKYFQGSWSGEPFNNKEWVERHGDGK 555
            RG +   QAVIPGGSSVPVL I +C + +MDFDDLK  GSGLGTAAVTVMD +VDMIAAIRRLAHFY+HESCGQCTPCR     EGTGWLE +L +ME G+AD REI ML+EISR IEGHTICALGDAAAWPVQGLIRRFQPVIEERIA  P+ +  E   +FQ +WSGE F N EW +  G GK
Sbjct:  274 RGGWNKLQAVIPGGSSVPVLPIEECEEALMDFDDLKARGSGLGTAAVTVMDDTVDMIAAIRRLAHFYRHESCGQCTPCR-----EGTGWLETILERMEVGDADVREIGMLDEISRQIEGHTICALGDAAAWPVQGLIRRFQPVIEERIAD-PQGFDFEA--HFQHAWSGEKFKNAEWTKEFGGGK 450
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig940.17437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZX3_ECTSI1.670e-11088.95NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
A0A7S3MEF9_9STRA1.290e-8875.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A835ZC73_9STRA1.010e-8774.87NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
A0A7S3MFV3_9STRA1.790e-8675.00NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
A0A7S1TYU1_9STRA4.920e-8273.40NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
A0A7R9ZM29_9STRA2.310e-7865.26Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2V010_9STRA6.380e-7871.12NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
A0A7S3K1X1_9STRA2.250e-7769.57NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
A0A7S4LQB8_OXYMA2.880e-7765.96Hypothetical protein n=1 Tax=Oxyrrhis marina TaxID... [more]
F0Y5S2_AURAN3.980e-7771.35NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig940contigS-dermatodea_contig940:109..4092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score303.9
Seed ortholog evalue4.5e-80
Seed eggNOG ortholog2880.D7FZX3
Preferred nameNdufv1
KEGG rclassRC00061
KEGG koko:K03942
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0016020,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
EggNOG free text desc.FMN binding
EggNOG OGsCOG1894@1,KOG2658@2759
EC1.6.5.3,1.6.99.3
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNB-ARC and TPR repeat-containing protein
Ec32 orthologEc-22_003750.1
Exons4
Model size1388
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig940.17437.1prot_S-dermatodea_contig940.17437.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig940 193..3277 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925405.5106385-UTR-S-dermatodea_contig940:108..1921622925405.5106385-UTR-S-dermatodea_contig940:108..192Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig940 109..192 +
1694079911.5200784-UTR-S-dermatodea_contig940:108..1921694079911.5200784-UTR-S-dermatodea_contig940:108..192Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig940 109..192 +
1622925405.5811684-UTR-S-dermatodea_contig940:3277..40921622925405.5811684-UTR-S-dermatodea_contig940:3277..4092Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig940 3278..4092 +
1694079911.5965955-UTR-S-dermatodea_contig940:3277..40921694079911.5965955-UTR-S-dermatodea_contig940:3277..4092Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig940 3278..4092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925405.5225315-CDS-S-dermatodea_contig940:192..3591622925405.5225315-CDS-S-dermatodea_contig940:192..359Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig940 193..359 +
1694079911.5345068-CDS-S-dermatodea_contig940:192..3591694079911.5345068-CDS-S-dermatodea_contig940:192..359Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig940 193..359 +
1622925405.5341709-CDS-S-dermatodea_contig940:1130..12811622925405.5341709-CDS-S-dermatodea_contig940:1130..1281Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig940 1131..1281 +
1694079911.5443316-CDS-S-dermatodea_contig940:1130..12811694079911.5443316-CDS-S-dermatodea_contig940:1130..1281Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig940 1131..1281 +
1622925405.5487-CDS-S-dermatodea_contig940:2532..26551622925405.5487-CDS-S-dermatodea_contig940:2532..2655Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig940 2533..2655 +
1694079911.5598798-CDS-S-dermatodea_contig940:2532..26551694079911.5598798-CDS-S-dermatodea_contig940:2532..2655Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig940 2533..2655 +
1622925405.567055-CDS-S-dermatodea_contig940:3229..32771622925405.567055-CDS-S-dermatodea_contig940:3229..3277Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig940 3230..3277 +
1694079911.5746655-CDS-S-dermatodea_contig940:3229..32771694079911.5746655-CDS-S-dermatodea_contig940:3229..3277Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig940 3230..3277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig940.17437.1

>prot_S-dermatodea_contig940.17437.1 ID=prot_S-dermatodea_contig940.17437.1|Name=mRNA_S-dermatodea_contig940.17437.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=163bp
MMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPC
RRASLLEGTGWLEQMLIKMEKGEADAREIPMLEEISRAIEGHTICALGDA
AAWPVQGLIRRFQPVIEERIAGGPELYQSEKGKYFQGSWSGEPFNNKEWV
ERHGDGKTYSRS*
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mRNA from alignment at S-dermatodea_contig940:109..4092+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig940.17437.1 ID=mRNA_S-dermatodea_contig940.17437.1|Name=mRNA_S-dermatodea_contig940.17437.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3984bp|location=Sequence derived from alignment at S-dermatodea_contig940:109..4092+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCGGCTATTACTACGCTCGCCAGGCCGTCATCCCCGGAGGGTCGTCGGT
GCCCGTGCTGGACATCAACGACTGCGCCGATGTGATGATGGACTTCGACG
ACCTCAAGAAGGCGGGGTCCGGCCTCGGCACCGCGGCCGTAACGGTGATG
GACAAGAGCGTCGACATGATCGCCGCCATCCGCCGCCTGGCTCACTTCTA
CAAGCACGAGTCTTGCGGGCAGTGCACCCCGTGCAGGCGAGCGAGTCTGC
TGTTTTTACACGGCTCTAGATGTGTTTTTTTGTTGTTCATTCTCGTGCCC
TTGAAGCTGGAGAAGTAGATAACGTGACTATTATGGTTTGCTGGGCGCCA
CGTGATGGCCAAAACGCGGTCGGTCGCGAGCGAAACGTGGCGTACTTCTG
CAGGTTTCAAACTACGCTGCATGTGCGTGGGTGTAGGGCAAAACCCCTGG
ATTCGGAAATTATCGAGTCTTGGTTCAGGGCCGCTCTCCCGCGAGTGAAG
ACACCGGCAGACACGCGGCACATTGTATTTGCACTACCTTCTCGTTTTGA
AGTATACAATGCCGGCGGGTATGTTTTTTTCTACGCGGAAACTTGTGGCG
GGCGACATTTTCCTGGCAAGGTTGGTTCGCCCAGTCTCTGCGCGGGATCG
TGATGACGTTGGAGCTATTTATTTTTGTAGAAACCTCGTTTCTATCCACG
ATAAACCCCGAATACATACGGTGCCACAACTTTAACTTGCCGCGAGAGTG
GACGGGGCATGATATCCCCGGCGTATGTATCAGTAAAGTGCGAAGGTACA
CGATCTGATCGGCCCTTCATTTGTGTGCCCTTCCCCGCTGTGGCGGGTTT
CTTTGGCCCAACGCGATATGAGTTTCAACTTTCCCCCGTGACGCGAAGAG
ACTTAGTTTGTGGTGGCCCAATTATGTGCCGCATCTCGCGCTTTTTGAAC
CTTGGCCTTTGGAGGAGCACCGTTTTACGCCCAATCTCCCAAAACGGAAT
ACTTGCGCACATTCTGGGACAGGGAGGGCACCGGGTGGCTGGAGCAGATG
CTCATCAAGATGGAGAAGGGCGAGGCAGACGCTCGCGAGATCCCCATGCT
GGAGGAAATTTCTAGGGCCATAGAGGGGCACACCATCTGCGCGCTTGGGG
ACGCCGCCGCGTGGCCTGTGCAGGTGCGTTTTCGCCTCCGTGTGCGTATG
TATGCATGATCGGGCAGTCGCTCTAACCTCAATGCGTTGGAGAACGGCGA
AACCATCAGAAACGCATGCAACACACGCGGCAGCACAAGCTTCGGGTGAA
GCTCAGCGGCGCACGTGCCAGTGTTTGAAGCGCACCATGCATGCGCTCTT
GCTTCCTGCACCGAGGGTCGGTCTGTCTCAAATGGATAAGCGACGACGCG
CTCTCACCCTTGTCCTTAGGGCCTAAGCCGTTTCGCCTCCGGGACGCCGA
GCGCGTTGATAGCTCGGTGTTTATAGGGTCACCTCAGCGAACTTTTTCGG
AGGCAGTCGGTAGTCGGGATTTCTGCTGCGGTGCGTGTGACTCACGTACG
AATTACCAGCAGTATCCGTGTCTCGTCCGTGCTCACGAGGGGTGATCCCA
TCTCTCCCCAGCACTTTGGCGTTAGGGCCGTTTCTATCGAGCGCTTTTCC
CCTCAAGAAACGCGAGAAGAGCCAGTGCGCCGCTTTTATTATCTCCGCCG
TTTCGCGGCAAAAACAAAACAGTCAATTCACGAAACGTGAGGTTTGCAAA
AAGGCGTGTTTGAAAAACTCACGTTTTGTTATATGCCCATTTTCGCGAGA
AAAATCAGCTCCGATAGAAACGGTCCTTAGACGTTTTTCGCGCGTTGGGT
TCAGCACTCTCCCGCGGCTCGCCGATTTTCTCGGGTTTTGATTGCTCATG
CTCTGGCGCTTTCCTTGGCGTACTGTATCATAGAAGAGATAACGTGTTTT
TTTTTATACTCAGGCGAGAATGGAACCCATGACCTCCATCTGACTTAGAC
CGTATAATAGTCTCCCCATTTGTAGATTGAAGACACATGTACAGAATCAC
TGGAGGGACACCCCCCGAGAATTTCTGTTGACCGGCGGTACATATACGCG
GGGACACATGCTGCTCACGATTTGGAAATTGAGTTTTTCTGCTCTCGAAT
GTATATACACACTGTTGTAGTCCACCTGTACACTTATAGTCCCCCCCCAG
CACATAGGCCTTACTGAGAGAGTAAAGGGCGTACCTACTTTCAGTTTCCC
CTGAACCAGTGTGCTTCTGAGTTAGGGATGTACATGGGGACTAGATTTTG
TTTTTTATAAAAAATTGATAAATAGATGGTGTCACAGCTAAGTCACCGTG
CGAGTTGCACGGTAACATATTCCGCAACACCGTTCACCTTTTTCGCTACG
TTGCTGTTTTTGCCGGCTTAACAGGGCTTGATCCGGCGGTTCCAGCCCGT
GATCGAGGAGCGCATCGCCGGCGGGCCGGAGCTGTACCAGTCCGAGAAGG
GCAAGTACTTCCAGGGGTCGTGGAGCGGCGAGCCCTTCAACAACAAGGTG
GGGTCTCACGCTCTTACAGGGAAGATGAGACGCCGTCGGACAGGTTGACG
CCGTTGTTGTCATGTGCCGGCTTTGCTCCTCCTTGTACTCCGTCGTTCTT
GTTGGTTCTGTTGTACATCTCGGGACGAAATTAAAAAAGTTCAACTCTGA
TGATGATGGCTGTTCTAGATAACGTGGTTGCGCTCGCTCCCAGGAGTGTA
TCTTGCGGGGAATCAGTCTACCTTGTTCCGTCGTCAAAATATAAAAAATA
GCAAGCTTTGCCGCGGGGGAAAAATGTGTATCACCGACCCGTTTGCGTGG
TACCCTGAAGCCGTTTACCTAGTGTATTTATTACATGTAGCGTTTTTTCT
CTCCCACGTGTCCGCGCCCCCCTAGATGTAACGTGTTTCCCACCCAAAGT
GTACATGGTGCCCAGAATCCCAGGTGTCTAGAAACAACTGGCGCCAGTAG
TTTCGATGCCGTGAAGTTTGCCGAGCAGACCGTTGTCGCGCTGCCCTTTT
CCCCGACTCAGCTTCTGTTGTCGCCACTCTCTGCCGCACACCGCGCATGG
CTCTTGCCCCCTTGATTTCAGGAATGGGTCGAACGGCATGGCGACGGGAA
AACCTACAGCCGATCATGATCGTCCGGCGCGCTTTTCCCTTTTTCCGAAG
CGCGATTTGCTGGCGAGTACCTGGGCCGTTGTTGCCTCGAGTATGGGGGT
GCGAACGTGTAACCTGGTGTTCCACGACCAATTTGCTGTTGACCCCGTTC
AGCGCGTTTGTGGGAAATCGATGTTGGGGGGGCAGTCCACGCTGAGAAAT
ATGTCTCGCGAGTTGTTAAAGGGATAATGGGATCACACCCTGCCCACCCA
TCACGGGATCGGAGGTGGTCTCGCTAACGGCCGCATGTGGCGCCCGCTGT
TACACGCTGTCTGTGTCGGGACCTGGTTTTTGAGAGATGGTGGAGGCGTG
CGGCTGCTGTAGGAATATACCTGCGGCCGTGGAGGGAGACTACCTGTGCG
TACATAGCGGGGGCGCGATCGTGTCGTGTTTGGGAGTCGAACGAAAGCGA
GTCCACGGTATGAATGAATGACACCTTTCTTCTACAAGTATCCTCTGCGG
AGATCCTCAGGATGATGACTGCTTTATGAACGAATTGACACATTTATTCT
ACAAGTATCCTCTGCGGAGATCCCTCAGGACGATGACTGCTTGCTTCGCT
CATGACTCGCCTGTATAGTTGTTCACAACGGTATTTTATTTCATCAAGGT
TGACGGTTTCAGCGAAGCAAAGAACAAAACGAGCCTAACCCGAAAACACC
GTCGCGGTGTGCTTCTCCCCCACCCCCACCCCACCTTACACTACCCAAAC
CGAAGCCTTTTTTTCGGGTCTGTAGGTGATTGATTGATTAACACATGTGA
CGATCGCAACAACACGACCAGAAATATCGCGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig940:109..4092+

>mRNA_S-dermatodea_contig940.17437.1 ID=mRNA_S-dermatodea_contig940.17437.1|Name=mRNA_S-dermatodea_contig940.17437.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at S-dermatodea_contig940:109..4092+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGACTTCGACGACCTCAAGAAGGCGGGGTCCGGCCTCGGCACCGC
GGCCGTAACGGTGATGGACAAGAGCGTCGACATGATCGCCGCCATCCGCC
GCCTGGCTCACTTCTACAAGCACGAGTCTTGCGGGCAGTGCACCCCGTGC
AGGCGAGCGAGTCTGCTATGATGGACTTCGACGACCTCAAGAAGGCGGGG
TCCGGCCTCGGCACCGCGGCCGTAACGGTGATGGACAAGAGCGTCGACAT
GATCGCCGCCATCCGCCGCCTGGCTCACTTCTACAAGCACGAGTCTTGCG
GGCAGTGCACCCCGTGCAGGCGAGCGAGTCTGCTGGAGGGCACCGGGTGG
CTGGAGCAGATGCTCATCAAGATGGAGAAGGGCGAGGCAGACGCTCGCGA
GATCCCCATGCTGGAGGAAATTTCTAGGGCCATAGAGGGGCACACCATCT
GCGCGCTTGGGGACGCCGCCGCGTGGCCTGTGCAGGGAGGGCACCGGGTG
GCTGGAGCAGATGCTCATCAAGATGGAGAAGGGCGAGGCAGACGCTCGCG
AGATCCCCATGCTGGAGGAAATTTCTAGGGCCATAGAGGGGCACACCATC
TGCGCGCTTGGGGACGCCGCCGCGTGGCCTGTGCAGGGCTTGATCCGGCG
GTTCCAGCCCGTGATCGAGGAGCGCATCGCCGGCGGGCCGGAGCTGTACC
AGTCCGAGAAGGGCAAGTACTTCCAGGGGTCGTGGAGCGGCGAGCCCTTC
AACAACAAGGGCTTGATCCGGCGGTTCCAGCCCGTGATCGAGGAGCGCAT
CGCCGGCGGGCCGGAGCTGTACCAGTCCGAGAAGGGCAAGTACTTCCAGG
GGTCGTGGAGCGGCGAGCCCTTCAACAACAAGGAATGGGTCGAACGGCAT
GGCGACGGGAAAACCTACAGCCGATCATGAGAATGGGTCGAACGGCATGG
CGACGGGAAAACCTACAGCCGATCATGA
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