mRNA_S-dermatodea_contig9393.17433.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9393.17433.1
Unique NamemRNA_S-dermatodea_contig9393.17433.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9393.17433.1 vs. uniprot
Match: D7FPD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD0_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 2.590e-42
Identity = 85/181 (46.96%), Postives = 112/181 (61.88%), Query Frame = 3 
Query:   75 SCRGIFWITAGLSWVVWVFAVAAAGDENWGETSGGTGFGVRTGFLDDNCASTIANESACVAYEFFVASQTMATFLCSVAVILLTVACCRPYEATHGSAQVLGLVGGVFMMLYAFFQMAAFLFFEEFTNEHNEEWSSGFNDMSLGPTYGVGVVAFLFGLINAIMVFVLYRQAGDGPLLAVVK 617
            +CR ++W   G  WVVWV    AAGDENWGE   G G+GV TGF    C     N+S C A+  F A+Q  AT +CSVAV+L TV+  RP +A +GS++ LGLVGGVFM L+ F QM + LF  +   E+N      F   + G TYG+G+ AF+FGLI  I+V   + QA +GPLL+  +
Sbjct:   21 TCRKVYWFGCGFGWVVWVLTTPAAGDENWGELPAGDGYGVATGFA---CDEGDVNDSFCTAHRNFAAAQKAATVMCSVAVLLFTVSFFRPSQARYGSSKGLGLVGGVFMALFTFCQMVSILFLVKSIQEYNRYGGDAFMAKT-GDTYGLGITAFVFGLIQVIIVLGFFGQAANGPLLSCTR 197
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BLAST of mRNA_S-dermatodea_contig9393.17433.1 vs. uniprot
Match: A0A6H5KLK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLK4_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.120e-23
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 3 
Query:  246 ACVAYEFFVASQTMATFLCSVAVILLTVACCRPYEATHGSAQVLGLVGGVFMMLYAFFQMAAFLFFEEFTNEHNEEWSSGFNDMSLGPTYGVGVVAFLFGLINAIMVFVLYRQAGDGPLLAVVKGTTA 629
            A VA   F A+Q  AT +CSVAV+L TV+  RP  A HGS++  GLVGGVFM L+ FFQM + LF  +   E+N  +  G  +   G TYG+G+ AF+FGLI  I+V   + QA +GPLL+  +  +A
Sbjct:    2 ATVADRKFAAAQKAATVMCSVAVLLFTVSFFRPSHARHGSSKGFGLVGGVFMALFTFFQMVSILFLVKSIQEYNR-YGGGAFEAKTGDTYGLGMTAFVFGLIQVIIVLGFFGQAANGPLLSCTRRISA 128
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BLAST of mRNA_S-dermatodea_contig9393.17433.1 vs. uniprot
Match: D7FWH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWH1_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.060e-7
Identity = 50/175 (28.57%), Postives = 80/175 (45.71%), Query Frame = 3 
Query:   87 IFWITAGLSWVVWVFAVAAAGDENWGETSGGTGFGVRTGFLDDNCASTIANESACVAYEFFVASQTMATFLCSVAVILLTVACCRPYEATHGSAQVLGLVGGVFMMLYAFFQMAAFLFFEEFTNEHNEEWSSGFNDMSLGPTYGVGVVAFLFGLINAIMVFVLYRQAG---DGPL 602
            ++W     + + W+FAVAAA D+ W +  G          L + C  +    S C  Y+   A Q  A  + S  V+++ VA  +P  AT      LG   G  +++++  Q+AAF          N + +  +  +  GPT GV V+A++FGL     + +L   A    DGPL
Sbjct:   48 VYWAVCFATAITWLFAVAAASDDAWLQFEG-----YPLLKLGERCEFSA---SFCDYYKTGTAFQFFAAIVISATVVVMIVAAFKPAPATGR----LGAAAGTMLLVFSVLQLAAFSIMAASAGRLNRD-NDNYFQIKAGPTIGVAVIAWVFGLAGGSAILLLRPHATPGQDGPL 209
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9393.17433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPD0_ECTSI2.590e-4246.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLK4_9PHAE3.120e-2346.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWH1_ECTSI1.060e-728.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9393contigS-dermatodea_contig9393:4645..8272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003860.1
Exons4
Model size1957
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9393.17433.1prot_S-dermatodea_contig9393.17433.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9393 4662..7076 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925405.152243-UTR-S-dermatodea_contig9393:4644..46611622925405.152243-UTR-S-dermatodea_contig9393:4644..4661Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9393 4645..4661 +
1694079911.2677178-UTR-S-dermatodea_contig9393:4644..46611694079911.2677178-UTR-S-dermatodea_contig9393:4644..4661Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9393 4645..4661 +
1622925405.2229187-UTR-S-dermatodea_contig9393:7076..82721622925405.2229187-UTR-S-dermatodea_contig9393:7076..8272Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9393 7077..8272 +
1694079911.3114922-UTR-S-dermatodea_contig9393:7076..82721694079911.3114922-UTR-S-dermatodea_contig9393:7076..8272Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9393 7077..8272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925405.1685352-CDS-S-dermatodea_contig9393:4661..47031622925405.1685352-CDS-S-dermatodea_contig9393:4661..4703Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9393 4662..4703 +
1694079911.276522-CDS-S-dermatodea_contig9393:4661..47031694079911.276522-CDS-S-dermatodea_contig9393:4661..4703Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9393 4662..4703 +
1622925405.1869037-CDS-S-dermatodea_contig9393:5493..56921622925405.1869037-CDS-S-dermatodea_contig9393:5493..5692Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9393 5494..5692 +
1694079911.2852602-CDS-S-dermatodea_contig9393:5493..56921694079911.2852602-CDS-S-dermatodea_contig9393:5493..5692Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9393 5494..5692 +
1622925405.1988862-CDS-S-dermatodea_contig9393:6279..64831622925405.1988862-CDS-S-dermatodea_contig9393:6279..6483Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9393 6280..6483 +
1694079911.293769-CDS-S-dermatodea_contig9393:6279..64831694079911.293769-CDS-S-dermatodea_contig9393:6279..6483Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9393 6280..6483 +
1622925405.208905-CDS-S-dermatodea_contig9393:6777..70761622925405.208905-CDS-S-dermatodea_contig9393:6777..7076Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9393 6778..7076 +
1694079911.3025882-CDS-S-dermatodea_contig9393:6777..70761694079911.3025882-CDS-S-dermatodea_contig9393:6777..7076Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9393 6778..7076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9393.17433.1

>prot_S-dermatodea_contig9393.17433.1 ID=prot_S-dermatodea_contig9393.17433.1|Name=mRNA_S-dermatodea_contig9393.17433.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=248bp
MPPIMPHSGVVTHGAPTPCSCRGIFWITAGLSWVVWVFAVAAAGDENWGE
TSGGTGFGVRTGFLDDNCASTIANESACVAYEFFVASQTMATFLCSVAVI
LLTVACCRPYEATHGSAQVLGLVGGVFMMLYAFFQMAAFLFFEEFTNEHN
EEWSSGFNDMSLGPTYGVGVVAFLFGLINAIMVFVLYRQAGDGPLLAVVK
GTTAGGARAPHSGIQQQESVDLPAATGHGGPSQAVAPPYGRVGGGNV*
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mRNA from alignment at S-dermatodea_contig9393:4645..8272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9393.17433.1 ID=mRNA_S-dermatodea_contig9393.17433.1|Name=mRNA_S-dermatodea_contig9393.17433.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3628bp|location=Sequence derived from alignment at S-dermatodea_contig9393:4645..8272+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AACACGCGACTACGCCTATGCCGCCAATCATGCCGCATTCGGGCGTAGTC
ACACATGGGGTGAGAAGCGACAGTCACATTACGTGATACGTTTTGTTTTA
ACGGTGTTCGATTTTGCTCCGCTCGGCTTTATATCGGGAGTAATATCATA
CGCAGATTCGTTTTCGTTTAACGCGGTTCCTTTGTTTACGGCGGTTCGCG
CGACGAGAGAGGCTTGCTTTCAAACACAAGCTAGTGTTCCAACATTCGCT
GACCTCGGTCGGCCTCATGCGTGGCTGCGGCTTTGACTTGCGCAAGAAGA
CGTGCTCACAGCGAATTAAACGCCCGTGCATGCGTGGCCGTGGCTTGGAG
ACACGTGCACATAGATAATACAGTGCGATGAATTTGACTTCGTAAACGCT
CATGATCATGAGTTGGGAGACGAGTTAGCGTCGTAGAATATTAAGGGTGA
CCTCAGGTCGCCGAATAAGTACCGTTGTTCGATTGGCGAGATGGCCGTTG
AGCCGGAGGATACTGTTACGCCGTTTTCAACAAGGGAGAGGGGAAGCCCT
TCCTGGGTGGTAGATGGGTGACGGTCGCGACGGACAGGCCACGGGCGTGT
TTTGACCACAGTTCAAACGCTTTCTTTTGAACACAAAGAGGGAAGATTTG
TTCCCCGCTGCGCTCCAAGCAAGCGTGGCCTCGAGGGCACATCGACGAAC
GCCAAGTCGATACGGAAGCACGAGCGTGGGCTTGTGTGCGCCATTGCTAT
AAGGCGAGCCCACTCGTAGCACGCTCTAAGGGGCGATACACCTTCGCACC
TCCCCCGTAACAAAAGCACCATTCCAATGCCGGACTCGTTTTTCGGCAGG
CCCCAACGCCGTGCTCGTGCCGCGGAATTTTTTGGATCACCGCTGGCCTG
AGTTGGGTCGTTTGGGTATTCGCGGTTGCGGCTGCGGGAGACGAGAACTG
GGGCGAGACTTCCGGTGGTACGGGATTTGGTGTGCGCACCGGTTTCCTCG
ACGATAACTGCGCCAGCACGATTGCGAACGAATCTGCCTGCGTCGCCTGT
AAGTGCCTTCAGTCTCCGTGACTTCGCGCGTCTTTGAAGGGGGCGGAAGA
GACATATTTGTGTGGTCCATTTCCACCTGCGTGTGAATGCGTACGCTTCG
TGCAGCGTGTTATGGTTCACGCTGCTGCAACTGATGCATGGATATATGGT
GAAGGTCTATTGTTGTTTACGTTATGGTCTTTCGTGCAGTCCTTCGAAAT
TCCTCTACTTGTAGATTATTTTCAGTTTGTACGCCTTCCATCTGGGAAAT
ACGGACAACCCAAGGTTGGTCCCTATTTCCGGTAGGCCGCCACGCGTATC
GTGGTTTTTTTAGTCTACAAGTAGACGGCCTGAGTTGGCTTGTGTGGGTT
ATGTTCTCCTTACATTTTATGGCAAGACCCGTGTTGACGCCCCTTCCGTG
CAGCAAACAAATACCGAGATACCACGTGTCCCTTTTTACGCATTTTGCTG
TTGTGTGCGTAGTGTCTAGCCCGCTTGCTTGCCACCAAGATATATGCTAC
ACGGCCACACGCGCCCCCTGTGTGTCACTTGCTGTCACTTAAACATACCA
TCTGCACGTCGTTTGCCTTCACGCTTCGCCCACAGATGAGTTCTTCGTTG
CATCCCAGACAATGGCCACGTTTCTGTGCTCTGTGGCGGTGATCCTTTTG
ACGGTGGCGTGCTGCCGGCCATACGAGGCAACTCACGGTTCGGCGCAAGT
TCTGGGCTTGGTCGGTGGCGTATTCATGATGCTGTATGCTTTCTTCCAGA
TGGCGGCGTTCTTGTTCTTCGAAGAATTTACAAATGAACGTGAGCCGCGT
GGTTACGACGGGAAATTCGATGCTACCCGCAGTATGCAGCTCTAGAGCTA
TCGTAGCACTGACGTCCTAATTTACTTGTGATGCTTCGGTCCGCAAAATA
GGCATGGAGACCGGCAATGCGTGGGATAGCAGTCGTGTACCTCGTCTCAC
GTACTTTATTGCTGTCTTCCCAAAGTCTCGTAGGTGCTTCTTTGCCTTTT
TGTTTTCGTACAAAGTATCAGCTCCTAAACTCTGCTGCCTCCTTCCTTGC
CTTGATCCCCTTTTGACCGTATGCGTGCCTTAGACAACGAAGAATGGTCG
AGTGGATTCAACGACATGTCCCTCGGCCCTACGTACGGCGTTGGCGTGGT
CGCGTTCCTCTTCGGCCTCATCAACGCCATCATGGTGTTCGTCTTGTACC
GCCAAGCGGGAGATGGCCCGCTCTTGGCGGTTGTAAAGGGAACAACCGCC
GGCGGGGCTCGAGCCCCGCACTCAGGAATCCAGCAGCAGGAAAGTGTCGA
TCTGCCGGCCGCCACTGGACACGGTGGTCCGAGTCAGGCGGTGGCGCCGC
CGTATGGAAGGGTTGGAGGGGGAAATGTCTAGATGGAAAGGTCGAGGCCT
AGGCTTTGGATTGGGGCGTGAACAATATTTATTTGTCTGGGGGTTTTAAT
GCTCCATTATCTTTTCGTCCCGAATCTTCTCGAATTATGTGCTTGCCTAC
ATACTACACTGTCGTGTACCTTTGGTGCAGGGGCTCGCGCAGTCCACACG
GGTTGGTTTGGTGGGCGCGTCTGTGACGTGTCTTGCTGGCGCCCTGGCTG
GTGCGCACACATACAGACATTTTGTCGTCGGCGTGCTTTGCCGGCTATCT
CGTAGAATAGCGGAAGCGAAGCTTTGACGCACGCGGTTTGTTTTCGAATA
GCTATACTATTGTGCGTTTTCCCCGCCGGGCTATCTATCGTCTTCAGGTT
TCATGTGTTCTTTGTGAGCCCATGTCGCCGCATAGCGCAAGCAAGGCTTC
AAGCGCAGATGCCGTTTTTTAGTATGTATTGTATGCCGGATGTATTGGTG
TATTATATGCCATGGTGTTTTTTAATGAATCGATTTTCAGTACAAGTATC
TATGTATCAAAGCACCTTGGGCGTTGGTGTCACTCAGTTTTACTTTCATA
TATATATATATATTTGTATATGTATACTCCCTTGCTGGGTTATAATAGTT
CACGAACGTGGGTATAGGTGGATTTCGTAGCATAGTATCCGCTATTAATA
CGTATAATCGGCCGTTATACTTAGTTTACCGGTCCGCCCGAGCAAGTCGA
AACCATCAATCGCTCGTGACAATCGCTTGGTACGTTTCCGGATGGATGCT
TCTTGTACGGGCGGGTGCCTTTTAATGTATTTTTATCGACGTGCTTTTTT
CTCTTCCTGTGCACCCAGGGGAGGGTAAAACATGGGCACTTTGGGGAGAA
ACAAGACTCTTCGACCGAGGTCTCTGAACTCACAGGACGTACTGCTTCCC
CCCGTGCCCTATAAAAATGTAGAAAATTCATTTTTAAGCGGATGAGAGGG
CGCGAGTAGGGCAGCACCAAGCAGCGGGAGGGACTGAGGCTCCGAGGCTA
GGGAACGTGGGGGGCGGGAGCGAGGGAGGCTGTGTGTTTGTCTTCTCTTC
GTATTTGAATCTGTCTCTTTTTCGAGTTCAAACTTTAAGCCACGGTGGAC
GGTGCCTGGGGGGCGGGGGACGAGGGAGACTATGGCGTGGGTTTGTTGCT
GTTCCTCTGCTTCTTCCTTTGTTTGTCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig9393:4645..8272+

>mRNA_S-dermatodea_contig9393.17433.1 ID=mRNA_S-dermatodea_contig9393.17433.1|Name=mRNA_S-dermatodea_contig9393.17433.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at S-dermatodea_contig9393:4645..8272+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGCCAATCATGCCGCATTCGGGCGTAGTCACACATGGGATGCCGCC
AATCATGCCGCATTCGGGCGTAGTCACACATGGGGCCCCAACGCCGTGCT
CGTGCCGCGGAATTTTTTGGATCACCGCTGGCCTGAGTTGGGTCGTTTGG
GTATTCGCGGTTGCGGCTGCGGGAGACGAGAACTGGGGCGAGACTTCCGG
TGGTACGGGATTTGGTGTGCGCACCGGTTTCCTCGACGATAACTGCGCCA
GCACGATTGCGAACGAATCTGCCTGCGTCGCCTGCCCCAACGCCGTGCTC
GTGCCGCGGAATTTTTTGGATCACCGCTGGCCTGAGTTGGGTCGTTTGGG
TATTCGCGGTTGCGGCTGCGGGAGACGAGAACTGGGGCGAGACTTCCGGT
GGTACGGGATTTGGTGTGCGCACCGGTTTCCTCGACGATAACTGCGCCAG
CACGATTGCGAACGAATCTGCCTGCGTCGCCTATGAGTTCTTCGTTGCAT
CCCAGACAATGGCCACGTTTCTGTGCTCTGTGGCGGTGATCCTTTTGACG
GTGGCGTGCTGCCGGCCATACGAGGCAACTCACGGTTCGGCGCAAGTTCT
GGGCTTGGTCGGTGGCGTATTCATGATGCTGTATGCTTTCTTCCAGATGG
CGGCGTTCTTGTTCTTCGAAGAATTTACAAATGAACATGAGTTCTTCGTT
GCATCCCAGACAATGGCCACGTTTCTGTGCTCTGTGGCGGTGATCCTTTT
GACGGTGGCGTGCTGCCGGCCATACGAGGCAACTCACGGTTCGGCGCAAG
TTCTGGGCTTGGTCGGTGGCGTATTCATGATGCTGTATGCTTTCTTCCAG
ATGGCGGCGTTCTTGTTCTTCGAAGAATTTACAAATGAACACAACGAAGA
ATGGTCGAGTGGATTCAACGACATGTCCCTCGGCCCTACGTACGGCGTTG
GCGTGGTCGCGTTCCTCTTCGGCCTCATCAACGCCATCATGGTGTTCGTC
TTGTACCGCCAAGCGGGAGATGGCCCGCTCTTGGCGGTTGTAAAGGGAAC
AACCGCCGGCGGGGCTCGAGCCCCGCACTCAGGAATCCAGCAGCAGGAAA
GTGTCGATCTGCCGGCCGCCACTGGACACGGTGGTCCGAGTCAGGCGGTG
GCGCCGCCGTATGGAAGGGTTGGAGGGGGAAATGTCTAGACAACGAAGAA
TGGTCGAGTGGATTCAACGACATGTCCCTCGGCCCTACGTACGGCGTTGG
CGTGGTCGCGTTCCTCTTCGGCCTCATCAACGCCATCATGGTGTTCGTCT
TGTACCGCCAAGCGGGAGATGGCCCGCTCTTGGCGGTTGTAAAGGGAACA
ACCGCCGGCGGGGCTCGAGCCCCGCACTCAGGAATCCAGCAGCAGGAAAG
TGTCGATCTGCCGGCCGCCACTGGACACGGTGGTCCGAGTCAGGCGGTGG
CGCCGCCGTATGGAAGGGTTGGAGGGGGAAATGTCTAG
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