mRNA_S-dermatodea_contig9389.17431.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9389.17431.1
Unique NamemRNA_S-dermatodea_contig9389.17431.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9389.17431.1 vs. uniprot
Match: D8LNE9_ECTSI (Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNE9_ECTSI)

HSP 1 Score: 407 bits (1045), Expect = 3.740e-133
Identity = 221/339 (65.19%), Postives = 264/339 (77.88%), Query Frame = 3 
Query:  261 SRTAPSCVLLLXXSLTVTLPSASSFLFPATATAR-----SR-ASCWKTRAESSD--AVEPVP-EEDDDPFADEDNSEGQPRSAGGLTLEGVYRRLKLETQGLDDGVVGLESKDTNFGVEIVKTQLSREPSLGIMLEEVARGGDGRGLVLVSGTAPGGNAEASGQINVGDTLCWVGVEPGRMTRVEALDWDQTVDVLGSFGDDRRVDITVVCKRLVKRESINVQFELPSGSREHDIKTGSNLRGEMIRLNVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREELMLMSTGNLPARWRLSCKTIVGRENVAGTLRVKAVPQAAWREQ 1250
            S++A S +LLL   L + L + +SFL P+ A  R     SR ASC   RA  +D  A E      +D+   +++  +G  RS  GLTL+GVY+RL LETQ   DGVVGLESKDT++ +E+VK Q+ R+PSLG+ LEEVARGGDGRGLVLV+G  PGGNAEASG+I VGDTLC  G+E G M+RVEALDWDQTV VLGSF ++   +I +V KRLVKRESINVQFELPSGSR+H+IK GSNLRGEMIRL+VPVYDP+T R+DQPYATGNCAGEG CGTCFVEVQ+GA+LLT  D+EELML+S GNLP RWRLSCK IVG+EN AGT+R+KAVPQA WR Q
Sbjct:    2 SKSAASSLLLL---LALQLRNGASFLLPSPAITRCSGFASRSASCGVMRASEADGDAEETASLNVEDEAKVEDEGDDGLARSPSGLTLDGVYKRLTLETQSRADGVVGLESKDTDYAIEVVKVQMQRKPSLGMQLEEVARGGDGRGLVLVAGLEPGGNAEASGKICVGDTLCSAGIE-GDMSRVEALDWDQTVSVLGSFAEES--EIVLVIKRLVKRESINVQFELPSGSRDHEIKAGSNLRGEMIRLDVPVYDPRTKRFDQPYATGNCAGEGTCGTCFVEVQQGADLLTSPDQEELMLLSRGNLPVRWRLSCKVIVGKENKAGTVRLKAVPQAEWRSQ 334
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BLAST of mRNA_S-dermatodea_contig9389.17431.1 vs. uniprot
Match: A0A836CRA8_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRA8_9STRA)

HSP 1 Score: 253 bits (647), Expect = 6.520e-75
Identity = 139/276 (50.36%), Postives = 181/276 (65.58%), Query Frame = 3 
Query:  468 QPRSAGGLTLEGVYRRLKLETQGLDDGVVGLESKDTNFGVEIVKTQLSREPSLGIMLEEVARGGDGRGLVLVSGTAPGGNAEASGQINVGDTLCWVGVEPGR-MTRVEALDWDQTVDVLGSFGDDRRVDITVVCKRLVKRESINVQFELPS-----------GSREHDIKTGSNLRGEMIRLNVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREELMLMSTGNLPARWRLSCKTIVGRENVAGTLRVKAVPQAAWREQQTR 1259
            +P +A G++LEG+Y+RLK+E   LD+G++GLES+D  FG+EIV                       RGLVL+     GGNA  SG IN GDTL +VG E  R MTRVE  D+D TV  LG + D    +IT+V KRLV+R+++ V FE P+           G +   +  GSNLR EMIR ++PVYD KT R+DQPYATGNC GEGICGTCFVEVQEGAELL+P D  E M+M   NLP RWRLSC+T+VG +N AG +R++++PQ+A+  ++ R
Sbjct:   35 EPVNADGVSLEGIYKRLKIEILDLDEGIIGLESRDPAFGIEIV-----------------------RGLVLIGDV--GGNAAESGLINTGDTLTYVGNEAARDMTRVEGQDYDTTVAALGKYAD--LAEITLVLKRLVQRKTLEVTFETPTAYAEDGTAVEWGGQGVQMLAGSNLRSEMIRRDIPVYDAKTRRFDQPYATGNCGGEGICGTCFVEVQEGAELLSPPDGLENMVMR--NLPRRWRLSCRTVVGGKNEAGQVRLRSIPQSAYVAERKR 281
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BLAST of mRNA_S-dermatodea_contig9389.17431.1 vs. uniprot
Match: A0A7S4DIM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIM7_HETAK)

HSP 1 Score: 251 bits (641), Expect = 1.220e-73
Identity = 131/257 (50.97%), Postives = 170/257 (66.15%), Query Frame = 3 
Query:  462 EGQPRSAGGLTLEGVYRRLKLETQGLDDGVVGLESKDTNFGVEIVKTQLSREPSLGIMLEEVARGGDGRGLVLVSGTAPGGNAEASGQINVGDTLCWVGVEPGRMTRVEALDWDQTVDVLGSFGDDRRVDITVVCKRLVKRESINVQFELPSGSREH-DIKTGSNLRGEMIRLNVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREELMLMSTGNLPARWRLSCKTIVGRENVAGTLRVKAVP 1229
            +G  R+A GLTLE +    K+    LD+G+ GL+++D N+G+EI K ++SRE  LG+ L E+  G DGRGLVLV   A GGNA  +GQ  VGD L WVG EPG MTRVE LD+D T+  LG + D  R  +T+V KRLV+R+ + V    P GS    ++  GS LRGEM+R  + VYDP   R+DQPY TGNC GEG+CGTC V V EG ELL+  DR E M++     PAR+RLSC+TIVG  N  G + +K++P
Sbjct:   58 DGVTRNADGLTLEEIAGLFKMSVFDLDEGLYGLDTRDVNYGIEIAKARVSREGGLGLGLSEMMAGRDGRGLVLVEDVAEGGNAATTGQFRVGDALSWVGEEPGDMTRVEGLDFDGTLAALGKYAD--REAVTLVAKRLVRRQPLEVTLIQPDGSEAKLEMLAGSVLRGEMLRQGLQVYDPSQKRFDQPYVTGNCGGEGLCGTCLVAVLEGKELLSLPDRVEAMVLE--KRPARYRLSCRTIVGVTNQPGKVVLKSMP 310
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BLAST of mRNA_S-dermatodea_contig9389.17431.1 vs. uniprot
Match: A0A4D9CWU2_9STRA (PDZ domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWU2_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.310e-61
Identity = 123/271 (45.39%), Postives = 157/271 (57.93%), Query Frame = 3 
Query:  489 LTLEGVYRRLKLETQGLDDGVVGLESKDTNFGVEIVKTQLSR-EPSLGIMLEEVARGGDGRGLVLVSGTAPGGNAEAS----GQINVGDTLCWVGVEPGRMTRVEALDWDQTVDVLGSFGDDRRVDITVVCKRLVKRESINVQFELPSGSREHD-----------IKTGSNLRGEMIRLNVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREELMLMSTGNLPARWRLSCKTIVGRENVAGTLRVKAVPQAAWREQQ 1253
            LTLE +  ++K E   LD G  GLESKD  + VEI K  +   E  +G+ LEE+ RG DGRG VLVS   P GNA  +    G+I VGD +C++G EP  M R E LD++QT+  L  F +     IT+V KRLV R S++V      G  E             +  GS LR E++R  +PVY   TLR+DQPY TGNC GEGICGTC V+V EG ELL   D  E M+       A WRLSC+ IVG  N  GT+R K +PQA + +++
Sbjct:   15 LTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGEGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGA-ANWRLSCRVIVGATNTPGTVRFKLMPQAPFTKKK 284
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BLAST of mRNA_S-dermatodea_contig9389.17431.1 vs. uniprot
Match: A0A7S2V297_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V297_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.900e-53
Identity = 103/203 (50.74%), Postives = 135/203 (66.50%), Query Frame = 3 
Query:  666 RGLVLVSGTAPGGNAEASGQINVGDTLCWVG---VEPGRMTRVEALDWDQTVDVLGSFG-DDRRVDITVVCKRLVKRESINVQFELPSGSREH-DIKTGSNLRGEMIRLNVP--VYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREELMLMSTGNLPARWRLSCKTIVGRENVAGTLRVKAVPQAAWREQQ 1253
            RGLVLV   APGGNA  S +I VGDTLC      V    +  +EA+D D T+  LG+     R+  + ++ KRLVKRE +NV+  LP G  +   + +GSNLRGEMIR  +P  +YDP+T RYDQP+ TGNC GEGICGTC +EV +G E+L+ AD  E ML+   N P RWRLSC+T VG +N +G+++V+AVPQ   RE +
Sbjct:    1 RGLVLVKDLAPGGNAALSAKIRVGDTLCRAADPTVGARSVVSLEAVDLDGTLQNLGALSFASRQKQLVLIFKRLVKREMVNVKIALPDGGEKTLQMLSGSNLRGEMIRQGLPEYIYDPETKRYDQPFITGNCGGEGICGTCLIEVMDGPEMLSEADNLENMLLE--NQPIRWRLSCRTFVGPDNKSGSVKVRAVPQKEMRESR 201
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BLAST of mRNA_S-dermatodea_contig9389.17431.1 vs. uniprot
Match: A0A7R9YBT6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBT6_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.130e-50
Identity = 102/259 (39.38%), Postives = 151/259 (58.30%), Query Frame = 3 
Query:  489 LTLEGVYRRLKLETQGLDDGVVGLESKDTNFGVEIVKTQLSREPSLGIMLEEVARGGD---GRGLVLVSGTAPGGNAEASG-QINVGDTLCWVGVEPGRMTRVEALDWDQTVDVLGSFGDDRRVDITVVCKRLVKRESINVQFELPSGSREH-DIKTGSNLRGEMIRLNVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREELMLMSTGNLPARWRLSCKTIVGRENVAGTLRVKAVPQAAWREQ 1250
            L++E +  RL ++   +DDG  GL  +D  +G+++VKT + R+PSLGI+L E+    D    R LVLV G    GNA A G  + VGD +  +    G     E  D+D  +D +    D    ++T+V  RLV+R  + + +ELP+G R       GSNLRG  ++  V +YD +T R+D PYATG+CAGEG+CGTC V V  G +LL+PADR E ++      P  WR +C+  VG +N  GT+ V+  PQ+ + ++
Sbjct:   58 LSVEDIADRLAIQVFDMDDGKFGLSCRDPAYGLKVVKTSVKRKPSLGIVLNEMVDASDPSADRALVLVGGLE--GNAAAEGVDLEVGDVITAIADGSGGYISTEGRDYDFLIDTIVGV-DPGAEELTLVVNRLVERAMVTINYELPNGDRSSVQAPAGSNLRGIFLQEGVRLYDERTRRFDMPYATGDCAGEGLCGTCLVNVWSGEDLLSPADRNEALICK--GRPMGWRAACRVFVGADNQEGTVEVRLQPQSRFDDE 311
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BLAST of mRNA_S-dermatodea_contig9389.17431.1 vs. uniprot
Match: A0A7S3P6U2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6U2_9STRA)

HSP 1 Score: 181 bits (460), Expect = 6.050e-47
Identity = 108/269 (40.15%), Postives = 157/269 (58.36%), Query Frame = 3 
Query:  489 LTLEGVY---RRLKLETQGLDDGVVGLESKDTNFGVEIVKTQL---SREPSLGIMLEEVARGGDGRGLVLVSGTAPGGNAEASGQINVGDTLCWVGVEPGRMT-RVEALDWDQTVDVLGSF------GDDRRVDITVVCKRLVKRESINVQFELPSGSREHDIKT--GSNLRGEMIRLNVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREELMLMSTGNLPARWRLSCKTIVGRENVAGTLRVKAVPQAAWREQ 1250
            +T E +Y   RRLKLE   L++G+ G +S+D  +G+E+++T++   S  PSLG++L E+A   DGRGLVLVS          S  I VGD +  V    G +  R   L++D+TV+ +G        GD     + +   RLVKR +I VQ   P G     I+   G NLR  ++R ++ +Y+ KT R+D PYATG+CAGEG+CGTC V V EG +LL P D  E ++  T   P  WR SC+T+VG  N  GT++V+  PQ+ + ++
Sbjct:  117 ITDEKLYEIARRLKLEIFDLEEGIFGFDSQDPVYGLEVIQTEIPLSSENPSLGLVLTEMAGNKDGRGLVLVSEVTGNAKNARSSPILVGDVITGVRTSDGSLRERTTGLNYDRTVEAVGDVKEAALKGDGT---LHLELNRLVKRATIQVQVVQP-GKNVTTIEALAGENLRRLLLRKDIRLYNRKTKRFDMPYATGDCAGEGLCGTCLVAVNEGMDLLNPKDGAEELI--TRGRPLSWRASCRTVVGSNNEGGTIQVRVQPQSDFEDE 379
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BLAST of mRNA_S-dermatodea_contig9389.17431.1 vs. uniprot
Match: B7G5I1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5I1_PHATC)

HSP 1 Score: 175 bits (443), Expect = 1.840e-45
Identity = 103/259 (39.77%), Postives = 150/259 (57.92%), Query Frame = 3 
Query:  495 LEGVYRRLKLETQGLDDGVVGLESKDTNFGVEIVKTQLS-REPSLGIMLEEVARGGDGRGLVLVS---GTAPGGNAEASGQINVGDTLCWVGVEPGRMT-RVEALDWDQTVDVLGSFGDDRRVD-ITVVCKRLVKRESINVQFELPSGSREH-DIKTGSNLRGEMIRLNVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREELMLMSTGNLPARWRLSCKTIVGRENVAGTLRVKAVPQAAWREQ 1250
            L  + ++ KLE   LD+G+ G +SKD  +G+E+V T +      LG++L E+A   DGRGLV+VS   G A   N +A   I+VGDT+  V    G +  RV A ++D+TV+ +G   +      IT+   RL+KR  + V+ +  SG  +  +   G NLR   +R  + +YD +T R+DQP+ TGNC G+G+CGTC V V +G +LL P D  E+ +  T   P  WR SC+T VG  NV GTLR+   PQ+   E+
Sbjct:   49 LMDLAQKFKLEIFDLDEGLFGFDSKDNRYGLEVVHTNIDVGNDGLGLVLTEMAGSPDGRGLVMVSKITGNAAKANPQA---IHVGDTITGVMANDGVLKERVTAFNYDKTVEAIGRAKESSTDGTITLELNRLIKRLPVRVEIDDGSGHVQVIEALAGENLRRMFMRKQLKLYDERTRRFDQPFNTGNCGGDGVCGTCLVNVLQGMDLLNPKDSHEVFI--TKGRPPSWRASCRTTVGFNNVGGTLRISLHPQSELPEE 302
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BLAST of mRNA_S-dermatodea_contig9389.17431.1 vs. uniprot
Match: A0A7S2WMR1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMR1_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.190e-35
Identity = 92/238 (38.66%), Postives = 126/238 (52.94%), Query Frame = 3 
Query:  579 FGVEIVKTQLSREPSLGIMLEEVARGGDG--RGLVLVSGTAPGGNAEASGQINVGDTLCWVGVEPGRMTRVEALDWDQTVDVLGSFGDDRRVDITVVCKRLVKRESINVQFELPSGSREHDIKT-----GSNLRGEMIRLNVP---VYDPKTLRYDQPYATG-NCAGEGICGTCFVEVQEGAELLTPADREELMLMSTGNLPARWRLSCKTIVGRENVAGTLRVKAVPQAAWREQQTR 1259
            F  ++   ++SR+  LG++L+E+    D   +GLVLV     G NA  +G    GDTL  V  E      +E  DW  TVDVLGS   D    IT+  KRLV R  + V      G+   D+ T     GSNLR E +R  +P   +YD +T+R+D     G NC GEG CGTC V   +G +L+ P  R E   +   N PARWR SC+ I+G +N AG + V+  PQ  + E+Q +
Sbjct:   74 FLEQVFDVEVSRDGGLGLVLDELYAANDQSEKGLVLVEEVVKGSNAARTGMFARGDTLTSV-TENTVTYNLEGKDWQTTVDVLGSLSSD---SITLSVKRLVPRARVQVSVTAADGT---DLGTFSCPAGSNLRREFLRRRLPASEIYDSQTMRFDSIGNAGSNCGGEGTCGTCIVAFTQGLDLVAPPSRVESKALQKQNRPARWRWSCRAILGVDNQAGDIMVQLKPQVQFEEEQNK 304
[Close]
BLAST of mRNA_S-dermatodea_contig9389.17431.1 vs. uniprot
Match: A0A383VEF3_TETOB (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VEF3_TETOB)

HSP 1 Score: 63.2 bits (152), Expect = 4.860e-8
Identity = 43/124 (34.68%), Postives = 62/124 (50.00%), Query Frame = 3 
Query:  861 VCKRLVKRESINVQFELPSGSREHDIKTGSNLRGEMIRLNVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREELMLMSTGNLPARWRLSCKTIVGRENVAGTLRVKAVPQ 1232
            VC +     +I V+F +  G +   I+    + GE  +L   + D K   Y        C G G CGTC V+VQEGAELL+     E   ++    P  WRL+C+TIVG    +GT+ ++  PQ
Sbjct:   33 VCVQASSEPTITVKF-VEEGQQPVTIEC---ISGEE-QLRAAMLDNKVDLYTTWGKLWQCGGGGQCGTCIVQVQEGAELLSERTATEDKKLN--KKPETWRLACQTIVGDGTNSGTVVIQTKPQ 149
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9389.17431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LNE9_ECTSI3.740e-13365.19Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A836CRA8_9STRA6.520e-7550.362Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S4DIM7_HETAK1.220e-7350.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CWU2_9STRA1.310e-6145.39PDZ domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A7S2V297_9STRA1.900e-5350.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9YBT6_9STRA2.130e-5039.38Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3P6U2_9STRA6.050e-4740.15Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7G5I1_PHATC1.840e-4539.77Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2WMR1_9STRA2.190e-3538.66Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A383VEF3_TETOB4.860e-834.682Fe-2S ferredoxin-type domain-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9389contigS-dermatodea_contig9389:1755..7343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score400.6
Seed ortholog evalue7.6e-109
Seed eggNOG ortholog2880.D8LNE9
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009767,GO:0009773,GO:0009987,GO:0010598,GO:0015979,GO:0016020,GO:0019684,GO:0022900,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0055114,GO:0098796
EggNOG free text desc.2Fe-2S iron-sulfur cluster binding domain
EggNOG OGs2S4WU@2759,COG0633@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionFerredoxin
Ec32 orthologEc-04_004110.1
Exons6
Model size2287
Cds size1059
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9389.17431.1prot_S-dermatodea_contig9389.17431.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9389 2774..7134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925404.9864814-UTR-S-dermatodea_contig9389:1754..27731622925404.9864814-UTR-S-dermatodea_contig9389:1754..2773Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9389 1755..2773 -
1694079911.1489575-UTR-S-dermatodea_contig9389:1754..27731694079911.1489575-UTR-S-dermatodea_contig9389:1754..2773Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9389 1755..2773 -
1622925405.0780587-UTR-S-dermatodea_contig9389:7134..73431622925405.0780587-UTR-S-dermatodea_contig9389:7134..7343Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9389 7135..7343 -
1694079911.2308412-UTR-S-dermatodea_contig9389:7134..73431694079911.2308412-UTR-S-dermatodea_contig9389:7134..7343Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9389 7135..7343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925405.0008855-CDS-S-dermatodea_contig9389:2773..29651622925405.0008855-CDS-S-dermatodea_contig9389:2773..2965Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9389 2774..2965 -
1694079911.1622398-CDS-S-dermatodea_contig9389:2773..29651694079911.1622398-CDS-S-dermatodea_contig9389:2773..2965Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9389 2774..2965 -
1622925405.011597-CDS-S-dermatodea_contig9389:3583..36731622925405.011597-CDS-S-dermatodea_contig9389:3583..3673Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9389 3584..3673 -
1694079911.1728482-CDS-S-dermatodea_contig9389:3583..36731694079911.1728482-CDS-S-dermatodea_contig9389:3583..3673Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9389 3584..3673 -
1622925405.0309727-CDS-S-dermatodea_contig9389:3927..40661622925405.0309727-CDS-S-dermatodea_contig9389:3927..4066Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9389 3928..4066 -
1694079911.182743-CDS-S-dermatodea_contig9389:3927..40661694079911.182743-CDS-S-dermatodea_contig9389:3927..4066Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9389 3928..4066 -
1622925405.0433648-CDS-S-dermatodea_contig9389:4284..44061622925405.0433648-CDS-S-dermatodea_contig9389:4284..4406Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9389 4285..4406 -
1694079911.1982152-CDS-S-dermatodea_contig9389:4284..44061694079911.1982152-CDS-S-dermatodea_contig9389:4284..4406Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9389 4285..4406 -
1622925405.0532775-CDS-S-dermatodea_contig9389:5224..53651622925405.0532775-CDS-S-dermatodea_contig9389:5224..5365Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9389 5225..5365 -
1694079911.2077913-CDS-S-dermatodea_contig9389:5224..53651694079911.2077913-CDS-S-dermatodea_contig9389:5224..5365Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9389 5225..5365 -
1622925405.0648348-CDS-S-dermatodea_contig9389:6759..71341622925405.0648348-CDS-S-dermatodea_contig9389:6759..7134Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9389 6760..7134 -
1694079911.2209523-CDS-S-dermatodea_contig9389:6759..71341694079911.2209523-CDS-S-dermatodea_contig9389:6759..7134Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9389 6760..7134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9389.17431.1

>prot_S-dermatodea_contig9389.17431.1 ID=prot_S-dermatodea_contig9389.17431.1|Name=mRNA_S-dermatodea_contig9389.17431.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=353bp
MMMTCDDNNPLRRAPTSSRTAPSCVLLLLLSLTVTLPSASSFLFPATATA
RSRASCWKTRAESSDAVEPVPEEDDDPFADEDNSEGQPRSAGGLTLEGVY
RRLKLETQGLDDGVVGLESKDTNFGVEIVKTQLSREPSLGIMLEEVARGG
DGRGLVLVSGTAPGGNAEASGQINVGDTLCWVGVEPGRMTRVEALDWDQT
VDVLGSFGDDRRVDITVVCKRLVKRESINVQFELPSGSREHDIKTGSNLR
GEMIRLNVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPA
DREELMLMSTGNLPARWRLSCKTIVGRENVAGTLRVKAVPQAAWREQQTR
RS*
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mRNA from alignment at S-dermatodea_contig9389:1755..7343-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9389.17431.1 ID=mRNA_S-dermatodea_contig9389.17431.1|Name=mRNA_S-dermatodea_contig9389.17431.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5589bp|location=Sequence derived from alignment at S-dermatodea_contig9389:1755..7343- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGACACGCTGAAACGTTGTACTACTGGGAGCGCTGATAAGAAGCTCGTT
GCGACAGGAAGTCCACTCGAGTGGAAAGAGCCGGCAGCGACCTTCGCTTC
AAGAGCAGCTTGCCCTGCCAGCAAAACCCTGCTGTCTTTTGCACATATCA
TATCACATCCAACGGCGGCCCGGCCCATACCATATTACTTTTGTGTCGCA
GCAGCGATTATGATGATGACATGCGACGACAACAACCCTCTCCGGAGGGC
ACCAACGTCATCGCGGACGGCACCATCCTGTGTGCTGCTGCTGCTGCTAT
CCCTCACGGTGACGCTGCCGAGCGCCTCTTCCTTCCTTTTCCCAGCGACG
GCCACCGCCAGGAGCAGGGCATCGTGTTGGAAGACTCGGGCCGAAAGTTC
TGACGCGGTAGAGCCGGTCCCTGAAGAAGATGATGATCCTTTCGCTGACG
AAGACAACAGCGAAGGGCAGCCCAGGAGCGCCGGCGGTCTGACGCTGGAG
GGCGTGTACAGGCGGCTGAAGCTGGAGACTCAAGGGCTTGACGACGGGGT
CGTTGGGCTCGAGTCGAAGGACACGAATTTTGGGGTGAGCGCGTCGTCTT
GTGTGCATGCAGGTCAGCCTGCTGTGCTGGGATTCCTTTTGCTCCCTTCC
CCAGACAGTCATGATGCTGTGTTGAAGTATGCTGTGTTGTAGCATCTGAC
AGCAAACAAACAGCACGTTTCGTGAAATGAACCAGATGAACCCTCACGTT
TTTGCCTGTCAATTCACGAATCGTGAGGTGATTTATATAAAAACAAAAAC
TACATTCTAGTACAGCAGTACAGTAGTAGTTCCCATGTACATCCCTAACC
CACGAGAAAACTGGTTCAGGGGACACTGAAAGTAGGTACGTCCTTTACTC
TCTCAGTAAGGCATATACTCCGGAGTATATATATGTGCCGGGGGGGACTA
TACATGTACAACTACAGTAACTACTGTACAGGTGGACTGTAATAGTGTGT
ACAGAATACAAAAAAATACAAAAAAAGAAACGTGAGGTGATTTATTTATT
TATTTTTGCTTCGAAACGGCGGAGATCAGAAAAGCGGCGCACTGGCTCTC
TCACGTTTCGTGAGGGGAAAAGCGCTCGATAGAAACGGCTCTAAGTTCCA
CGACATACAGTATATACGGCGTCATGAAAGTATGTGTCGTGCACAGAGGC
AGTCAGTATGTAGGCGTCCGTAGTATTTTAGATTGTTTGGCATGTTGCAG
CTCTGGGCGAGCGGTTCTAGGGTAGTGCTGTTCGGTCGCGTGGAGAGCAG
CATGAAGAAGATACATGTTAATGTTTCAATGGTGCTCATGTGCAGTATTC
GGGTCAACAACTTGCATGACTACTGTATTATAGCTCTACGGAACGCGCAT
ACACGCATGAGTGCGCGTAGTACGTGTTTCCCGAACACGTCCGCGACTGA
TGTTGTCATCTATCTCACACCGATAGTTTCAATGTTTCACCATTCAGAGC
TCTATTAATAGCTGCTATTATTACAGTAGAGCTAGCTCTAAAAATCTTGG
TGGGTGACTCTTGCAACCAAGGACTAGAAGGCGCGTTGAGCCGCAACTGA
TCGTACCGCAAGGTACACGCACCGCACGGCCTCGCGCTTAACCCCATTTG
GGACGAAGTCCGTTTAAGGTTTAAGGGGTCACCTGCCCGCACCTTACTGC
GCGTAAAACAGTTACTCAACCACGGCTACTCTTCGCCCTTGTAGTGGCGA
CAGAAAAGAAAAGCGGCCTCGTGCCACGCTTAGCTCGCATGCACGATGGT
ATTATAGTATATAGTATATAGTATATAGTATGCGCTCGTGCGTGTAGCCG
TCACCGCATCACCCGTAGTCAGTAGTCAGTATAATAGCCACCACATTCGG
CGCAAAAACAGACTCTGTTCTAAAACGGTGAACCTTCTCTTTCGATCCGT
TTAATCACCCGTGCGCATGTGTGGACAGGTGGAGATAGTCAAGACACAGC
TGTCGCGCGAGCCCTCGCTAGGGATTATGTTGGAAGAGGTGGCGCGCGGC
GGTGACGGCCGCGGCCTGGTGTTGGTGTCTGGCACGGCTCCTGGAGGGAA
TGCCGAGGCTTCTGGTCAGGTCAGATGAGGGATATCGACAAGAAACATAG
GTAGACTCCGTGTGGCATCGGACCTTGAAGTGTTCCTATGGATTGGCTCT
AGAGGTACACTGCGATTCGCGATTTACCGTCTTCCCCGACCGAGCCGCTG
CGGTCACTATGGTACTCGAGCTTCTTACACCGTAAACAGGGTCCTTGCCC
TCCCTAGGCCTCGCCGTGACGCGCTAAAGTGTTCGCATGGCTGGCGGGCT
ATCGCACTCTCGCGATGTGTATGTTTCGTGGTGCGTATCTGCCACTGTTA
GCCTTGGGGCTCGTCGACAAGCCAACGAACGGGTCCTGCAATGCTCGAGC
ATGTAGCGGTACGGCATATTCCTCCAGGTTATATTTAGCAGTAGTTCAGT
CCCAGCGGATGGCAGCGTGCGCACGCCTTTAGACTGGCAGCAGCTGCGTG
AGGCCAGGCCGGCGCGCTTCGGCCGAAGCTCTCGGTTGACCTTGTTACGT
GCATGAGCCGTCGAGCACGCGAAGCTGTTTTGTAAACCCACGACAACGCT
CCCGGACCGCCAGTCAGGGCAGTTGACCGTGTCTTGTTGGGAAATCAACG
GCTGCCTGGAGGGCTAGCGCTGGGTTGGAATAGGCTAGCGGCAGCTTTCA
TTGTTCCTGTGTCGTCTTCAGTCCTTGCTGCCACAACTGACCACGTGCAA
GGTTTGGCATGCTTACCCGTCGAACGGGATGCGTGACCCGAAAACGACTC
GTTGTAGTTCTTCGTGCGGACCCACATGAAGCAGCACACCGCCACCGCTG
TTGCCGTTGCGACGATAACGCGACCTCTCTCTGCCAGATCAATGTGGGAG
ACACCCTCTGTTGGGTTGGAGTGGAGCCAGGTCGGATGACGCGGGTCGAA
GCTCTAGACTGGGATCAAACCGTCGACGTTCTCGGCTCGTTCGGGGATGA
CAGGCGAGTGTCCCACCGCAACGTCCAGCACGGCAGCTGGCTGCGTTTTT
TTTTCTTTCCTTGCGCCTCGGTGAAAGGTTTGGCAGAATTGACAGGTCGT
CGGACATTTCGACTCAGGCAGTTGCAGGTGCGTCGGTGCGCGTTGCGCGT
TGCGTCTCCTAAGCTCCCAGCCTCGACTTCCCTCTTCGTGCAACGCTTGC
GTGTTCCCGCCGTGGTCCTCGTCGCAGGGATATCACAGTGGTCTGCAAGC
GCTTGGTGAAGCGGGAATCTATCAACGTCCAGTTTGAGCTGCCTAGCGGC
AGTCGCGAACATGACATCAAGACCGGGAGCAACCTGAGGGGGGAGATGAT
CCGACTCAACGTTCCGGTAGGCGGGGTTTTGTGGCTGTTGCTTGTTCCCA
TTCCCAACACACACCAGCAACTTGATGCGCCCCGATCCGCAGCCTCCAAA
CATTCTGCTCGTGCGCGAGCAAGGTTGTACGTTTTTTTTGTCGTGCATCA
TGTTGTGGCATTTTCAAGTACTGTATCGGCATTTTCTAACAGTATATTAT
AGCGACTCCAGCGAGAAGTGTCACCAAGCCCGTCGCAACGCCTGCCTTTG
CGTTGTTTTTGTCCGGCAAGGTATACGACCCGAAAACTTTGAGATACGAC
CAACCGTACGCGACCGGTAACTGCGCGGGAGAAGGTATCTGCGGCACCTG
CTTCGTCGAGGTACGTTTTGTTCGTGAGCGAGATGAGCCGCCTTTCGAAG
ATACGGGGATTATGTAATGGAGTTGGTGGTTTCCTCCACCTGATTTTCCT
CTCGCCGTGGTCGGATACAGTATTGCTCCTGGGAATGTATCTACAAGATT
TTCCGCCATACTGTGAAACTCTGTTTATTGCCGCATGTCCCGCTTCGTCG
AGGATAACAGCTGCGGCACGAAGCGAGTCAGCACGTAAAGGCCATGGGAG
GGGGGTCGATAGCGTGGCAGCGATTCATTGTAGAATTTTGTGTCAGATCC
GTGATTCTGCACGTCCCCGATCTCGATCGTCGATCCGAAGCGACGCCCAG
ATTTGTGTGGTGTGGGACACTACAGCTGTGCGTCATTGCTCGTGCGTTCT
TTGCTCACTGGCGTCGATCATGCGCTTCGGCAGTGTTTGCCGCGGGCGAC
GTGTGCTGTGTGCTCCGACTGCGGGGTATTGCCGTCAACCCGCGGTTGAC
TGATGAACGTATACTCGCTCAATAATATACCAGTTCCCTCGAGCGAGTCG
TCCTCGACAATGGCCGGAACAATCATAGCCAGTGTGTAGATTCACACGCG
CTCGGCGGCCGTCCTCTCGCACACACAGGTCCAGGAGGGGGCAGAACTTC
TGACACCTGCCGATCGAGAGGAGCTAATGCTCATGTCCACGGGGAATCTG
CCGGCCCGCTGGCGTCTGTCGTGCAAGACAATCGTTGGCCGGGAAAACGT
CGCGGGAACGCTTCGCGTGAAAGCGGTGCCGCAGGCAGCGTGGCGGGAGC
AGCAGACTCGCCGAAGCTGAAGCCACACAGGAGGAGAACGCTAACGTTAA
CACCTGTAGAAAGAGGCCGGCTGACACACGGCTATTCGTATTTCATGGCG
CGTTGTAGATCGCTGCCTTCATCGAGCTATATGCGTACGTAGCATATACA
CGACATAATGTAGCGCAAGGTTTGCGGCCCACGGGGACATGGCTTAGATT
CGCTGTTCGCCTTTCTCGGAGGCTGAATTTTGCTCTTATGGAGCGCGCCG
ATTTCGTTTCCGTGGCCAATGCAGCCGAGGTCTTGTGTTTTCGGCTGCAG
GTGCATTGACTTTTCATTACGGCAAGTTTTTCGGCGGTGGGTTCGGCGGC
CGTTTGTAGAGGCGTTCGAAGTATACGGTAGGTTAGGTCTGTAGAGAGAG
AGAGAAGGGGCACGCAGCTTTCCGATTGGTTGAAAGAAATGGGCGAATAA
ATTGTTTGGGAAACAAACCCGTGGTCGTCTGCTGAGGCGAGGAGAAAGGA
GTACACTACCCTGACCTCGAGACTGTTGTATATTTCGGAAGCACATGTAT
GTCTAGGTTATCATGGATGCCAGGGGGACAGCTTACAAGTAAAAGCAAAG
GAATATTTGATGAAATTTGCAACGAAAGAGCTCAATCCAAGAACACCCTT
AGGTTCAACCCTCGATCCGCCCGCGTGATCGTTTCTGCTATTTGAGGTAT
AAGTACGTGGTTAGAGATCGTCGCTGTTCAGCGCGACCAGCCGCGCAGCT
CCATTTCGTTGATCGCTTCTTCTGCGCAAGAATGAGAACCACGCCCCGTG
GCGATTTTAGAGCACATCTGGCGAATGTCCCGGAGTTATACCCCTTCTGT
TTCCGAGAGTTAGTTTATGTAAATTCCTTCTTTGCATGTACTATACTTGT
ATAGGTAATTCCGTTTGTACATAGGGTTTTTTCGATGTCTCGATTTCTGG
CCACGAGCGGGATCGGCAACCGTTGGTGGGCCGGTCGGCTGGAAGTTTGA
TAATCAACCAATCTTGACATACAGCATCATACAAAAATG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9389:1755..7343-

>mRNA_S-dermatodea_contig9389.17431.1 ID=mRNA_S-dermatodea_contig9389.17431.1|Name=mRNA_S-dermatodea_contig9389.17431.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2118bp|location=Sequence derived from alignment at S-dermatodea_contig9389:1755..7343- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGATGACATGCGACGACAACAACCCTCTCCGGAGGGCACCAACGTC
ATCGCGGACGGCACCATCCTGTGTGCTGCTGCTGCTGCTATCCCTCACGG
TGACGCTGCCGAGCGCCTCTTCCTTCCTTTTCCCAGCGACGGCCACCGCC
AGGAGCAGGGCATCGTGTTGGAAGACTCGGGCCGAAAGTTCTGACGCGGT
AGAGCCGGTCCCTGAAGAAGATGATGATCCTTTCGCTGACGAAGACAACA
GCGAAGGGCAGCCCAGGAGCGCCGGCGGTCTGACGCTGGAGGGCGTGTAC
AGGCGGCTGAAGCTGGAGACTCAAGGGCTTGACGACGGGGTCGTTGGGCT
CGAGTCGAAGGACACGAATTTTGGGATGATGATGACATGCGACGACAACA
ACCCTCTCCGGAGGGCACCAACGTCATCGCGGACGGCACCATCCTGTGTG
CTGCTGCTGCTGCTATCCCTCACGGTGACGCTGCCGAGCGCCTCTTCCTT
CCTTTTCCCAGCGACGGCCACCGCCAGGAGCAGGGCATCGTGTTGGAAGA
CTCGGGCCGAAAGTTCTGACGCGGTAGAGCCGGTCCCTGAAGAAGATGAT
GATCCTTTCGCTGACGAAGACAACAGCGAAGGGCAGCCCAGGAGCGCCGG
CGGTCTGACGCTGGAGGGCGTGTACAGGCGGCTGAAGCTGGAGACTCAAG
GGCTTGACGACGGGGTCGTTGGGCTCGAGTCGAAGGACACGAATTTTGGG
GTGGAGATAGTCAAGACACAGCTGTCGCGCGAGCCCTCGCTAGGGATTAT
GTTGGAAGAGGTGGCGCGCGGCGGTGACGGCCGCGGCCTGGTGTTGGTGT
CTGGCACGGCTCCTGGAGGGAATGCCGAGGCTTCTGGTCAGGTGGAGATA
GTCAAGACACAGCTGTCGCGCGAGCCCTCGCTAGGGATTATGTTGGAAGA
GGTGGCGCGCGGCGGTGACGGCCGCGGCCTGGTGTTGGTGTCTGGCACGG
CTCCTGGAGGGAATGCCGAGGCTTCTGGTCAGATCAATGTGGGAGACACC
CTCTGTTGGGTTGGAGTGGAGCCAGGTCGGATGACGCGGGTCGAAGCTCT
AGACTGGGATCAAACCGTCGACGTTCTCGGCTCGTTCGGGGATGACAGGC
GAGTATCAATGTGGGAGACACCCTCTGTTGGGTTGGAGTGGAGCCAGGTC
GGATGACGCGGGTCGAAGCTCTAGACTGGGATCAAACCGTCGACGTTCTC
GGCTCGTTCGGGGATGACAGGCGAGTGGATATCACAGTGGTCTGCAAGCG
CTTGGTGAAGCGGGAATCTATCAACGTCCAGTTTGAGCTGCCTAGCGGCA
GTCGCGAACATGACATCAAGACCGGGAGCAACCTGAGGGGGGAGATGATC
CGACTCAACGTTCCGGGATATCACAGTGGTCTGCAAGCGCTTGGTGAAGC
GGGAATCTATCAACGTCCAGTTTGAGCTGCCTAGCGGCAGTCGCGAACAT
GACATCAAGACCGGGAGCAACCTGAGGGGGGAGATGATCCGACTCAACGT
TCCGGTATACGACCCGAAAACTTTGAGATACGACCAACCGTACGCGACCG
GTAACTGCGCGGGAGAAGGTATCTGCGGCACCTGCTTCGTCGAGGTATAC
GACCCGAAAACTTTGAGATACGACCAACCGTACGCGACCGGTAACTGCGC
GGGAGAAGGTATCTGCGGCACCTGCTTCGTCGAGGTCCAGGAGGGGGCAG
AACTTCTGACACCTGCCGATCGAGAGGAGCTAATGCTCATGTCCACGGGG
AATCTGCCGGCCCGCTGGCGTCTGTCGTGCAAGACAATCGTTGGCCGGGA
AAACGTCGCGGGAACGCTTCGCGTGAAAGCGGTGCCGCAGGCAGCGTGGC
GGGAGCAGCAGACTCGCCGAAGCTGAGTCCAGGAGGGGGCAGAACTTCTG
ACACCTGCCGATCGAGAGGAGCTAATGCTCATGTCCACGGGGAATCTGCC
GGCCCGCTGGCGTCTGTCGTGCAAGACAATCGTTGGCCGGGAAAACGTCG
CGGGAACGCTTCGCGTGAAAGCGGTGCCGCAGGCAGCGTGGCGGGAGCAG
CAGACTCGCCGAAGCTGA
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