mRNA_S-dermatodea_contig93884.17430.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig93884.17430.1
Unique NamemRNA_S-dermatodea_contig93884.17430.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig93884.17430.1 vs. uniprot
Match: D7G8S4_ECTSI (Serine O-acetyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8S4_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 5.860e-40
Identity = 68/78 (87.18%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    1 QVSALMCDMFADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRERQNLARYLQSVCSEV 234
            +V +LM DM+ADEP LDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLM+WLWRR+R NLARYLQS+CSEV
Sbjct:  222 EVRSLMSDMYADEPLLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMNWLWRRDRHNLARYLQSICSEV 299          
BLAST of mRNA_S-dermatodea_contig93884.17430.1 vs. uniprot
Match: A0A835ZGB2_9STRA (Serine O-acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGB2_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.250e-18
Identity = 40/79 (50.63%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    1 QVSALMCDMFADEPFLDFVVAEDLLAHAMQDTSL-PDVLTAMLFHKGFTALTTYRLMHWLWRRERQNLARYLQSVCSEV 234
            +V  +M +MF  +P ++ ++A D+LAHA++D+    D+L+ +LFHKGF AL TYRL HWLW++ R+ LAR+ QSV SEV
Sbjct:   64 EVGTIMTEMFEADPEVEEIMAADILAHALRDSDDGTDLLSVLLFHKGFHALATYRLAHWLWQQGRRQLARFFQSVNSEV 142          
BLAST of mRNA_S-dermatodea_contig93884.17430.1 vs. uniprot
Match: A0A023D2Z9_ACIMT (Serine acetyltransferase n=1 Tax=Acidomonas methanolica NBRC 104435 TaxID=1231351 RepID=A0A023D2Z9_ACIMT)

HSP 1 Score: 71.2 bits (173), Expect = 5.660e-13
Identity = 31/76 (40.79%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    4 VSALMCDMFADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRERQNLARYLQSVCSE 231
            ++AL+    A  P +      D++A   +D + PD +TA LF KG+ A+  +R+ HWLWR +RQ+LAR++QS+ SE
Sbjct:   72 LTALVASALAHSPAIAEAACADMIAVQERDAACPDYVTAFLFFKGYHAIQAHRIAHWLWRHDRQHLARHIQSLVSE 147          
BLAST of mRNA_S-dermatodea_contig93884.17430.1 vs. uniprot
Match: A0A1M6MFJ3_9BACT (Serine acetyltransferase n=1 Tax=Rubritalea squalenifaciens DSM 18772 TaxID=1123071 RepID=A0A1M6MFJ3_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 4.200e-12
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    1 QVSALMCDMFADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRERQNLARYLQSVCSEV 234
            ++  L+ D+F + P +    A D++A   +D +    +  MLF KGF A+ TYR+ H+LW+ +R +LA Y QS+CSEV
Sbjct:   76 ELMPLLKDVFVNNPMVTRSAAADMMAIYERDPACKSPMEPMLFFKGFMAMATYRVSHFLWKMDRTSLALYFQSICSEV 153          
BLAST of mRNA_S-dermatodea_contig93884.17430.1 vs. uniprot
Match: W7TD91_9STRA (Serine O-acetyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD91_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.840e-12
Identity = 33/78 (42.31%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 QVSALMCDMFADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRERQNLARYLQSVCSEV 234
            ++  L+  +F +EP +   + EDLL   M+D+S+P +L A LF KG+ A+ TYR+ H ++ + R++LARYLQS+ SE+
Sbjct:  155 KMKLLIDSVFQEEPGIVQDLREDLLVATMRDSSIPSLLAAFLFSKGYHAVATYRIAHSIYSQGRESLARYLQSLNSEL 232          
BLAST of mRNA_S-dermatodea_contig93884.17430.1 vs. uniprot
Match: D5EHU8_CORAD (Serine acetyltransferase n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865 / 04OKA010-24) TaxID=583355 RepID=D5EHU8_CORAD)

HSP 1 Score: 66.6 bits (161), Expect = 2.590e-11
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   10 ALMCDMFADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRERQNLARYLQSVCSEV 234
            ++  D F  +P +   VA D+ A   +D + PDVLT +L+ KGF +L  YR+ H+LW +ER+ LA YLQS+ SE 
Sbjct:   65 SVFIDAFESDPQILQRVACDMNAVKERDPACPDVLTPLLYFKGFQSLVCYRVSHYLWHQERRELALYLQSLISET 139          
BLAST of mRNA_S-dermatodea_contig93884.17430.1 vs. uniprot
Match: A0A0P0EXP5_AZOBR (Serine acetyltransferase n=24 Tax=Azospirillaceae TaxID=2829815 RepID=A0A0P0EXP5_AZOBR)

HSP 1 Score: 66.6 bits (161), Expect = 3.350e-11
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 QVSALMCDMFADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRERQNLARYLQSVCSEV 234
            Q++ L+    AD P +      DL A   +D +  + LT  L++KGF AL  +R+ HWLWRRER++LA +LQS  SEV
Sbjct:   89 QLAMLVRSAVADAPCIVEEACSDLQAICTRDPAADNCLTPFLYYKGFHALEWHRIGHWLWRRERRDLAHFLQSRVSEV 166          
BLAST of mRNA_S-dermatodea_contig93884.17430.1 vs. uniprot
Match: A0A5N3PA95_9HYPH (Serine acetyltransferase n=1 Tax=Microvirga brassicacearum TaxID=2580413 RepID=A0A5N3PA95_9HYPH)

HSP 1 Score: 65.9 bits (159), Expect = 5.640e-11
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   22 DMFADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRERQNLARYLQSVCSEV 234
            + FAD+P +      D++A   +D +   VL  +L+ KGF A+ T+RL HWLW R+RQ+ A YLQS  SEV
Sbjct:   81 EAFADDPSIREAFRADIVAVMDRDPACTRVLEPVLYFKGFHAIQTHRLAHWLWNRKRQDFALYLQSRSSEV 151          
BLAST of mRNA_S-dermatodea_contig93884.17430.1 vs. uniprot
Match: UPI001A9FFC56 (Serine O-acetyltransferase n=2 Tax=Acetobacter garciniae TaxID=2817435 RepID=UPI001A9FFC56)

HSP 1 Score: 65.9 bits (159), Expect = 6.030e-11
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 1
Query:   13 LMCDMFADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRERQNLARYLQSVCSEV 234
            L+ + F  EP +    A DLLA   +D + PD +T  LF KG+ A+ TYR+ HWLW   R++LA +LQS  SE+
Sbjct:   83 LVQEGFDAEPDIVCAAAADLLAIRERDPACPDFVTPFLFFKGYQAVQTYRVAHWLWHEGRRHLALHLQSRASEL 156          
BLAST of mRNA_S-dermatodea_contig93884.17430.1 vs. uniprot
Match: A0A2E5XGG8_9BACT (Serine acetyltransferase n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A2E5XGG8_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 6.070e-11
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 QVSALMCDMFADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRERQNLARYLQSVCSEV 234
            ++S L   +  D P L    A DL A   +D +    L  ML++KGF A+TTYR+ H+LW   RQ +A YLQS+ +EV
Sbjct:   77 ELSPLFGGLLRDHPGLVHSAAADLAAIVQRDPACSSPLEPMLYYKGFLAITTYRVSHYLWHNGRQAMALYLQSLANEV 154          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig93884.17430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8S4_ECTSI5.860e-4087.18Serine O-acetyltransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A835ZGB2_9STRA1.250e-1850.63Serine O-acetyltransferase n=1 Tax=Tribonema minus... [more]
A0A023D2Z9_ACIMT5.660e-1340.79Serine acetyltransferase n=1 Tax=Acidomonas methan... [more]
A0A1M6MFJ3_9BACT4.200e-1239.74Serine acetyltransferase n=1 Tax=Rubritalea squale... [more]
W7TD91_9STRA6.840e-1242.31Serine O-acetyltransferase n=2 Tax=Monodopsidaceae... [more]
D5EHU8_CORAD2.590e-1144.00Serine acetyltransferase n=1 Tax=Coraliomargarita ... [more]
A0A0P0EXP5_AZOBR3.350e-1143.59Serine acetyltransferase n=24 Tax=Azospirillaceae ... [more]
A0A5N3PA95_9HYPH5.640e-1145.07Serine acetyltransferase n=1 Tax=Microvirga brassi... [more]
UPI001A9FFC566.030e-1144.59Serine O-acetyltransferase n=2 Tax=Acetobacter gar... [more]
A0A2E5XGG8_9BACT6.070e-1142.31Serine acetyltransferase n=1 Tax=Verrucomicrobiace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig93884contigS-dermatodea_contig93884:197..436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.1
Seed ortholog evalue5e-10
Seed eggNOG ortholog1382230.ASAP_0549
Preferred namecysE
KEGG rclassRC00004,RC00041
KEGG koko:K00640
KEGG ReactionR00586
KEGG Pathwayko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111
KEGG ModuleM00021
EggNOG free text desc.serine acetyltransferase
EggNOG OGs1MVFX@1224,2TQQ5@28211,COG1045@1,COG1045@2
EC2.3.1.30
COG Functional cat.E
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size225
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925404.9430306-UTR-S-dermatodea_contig93884:196..2111622925404.9430306-UTR-S-dermatodea_contig93884:196..211Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig93884 197..211 +
1694079911.123943-UTR-S-dermatodea_contig93884:196..2111694079911.123943-UTR-S-dermatodea_contig93884:196..211Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig93884 197..211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925404.9574802-CDS-S-dermatodea_contig93884:211..4361622925404.9574802-CDS-S-dermatodea_contig93884:211..436Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93884 212..436 +
1694079911.1380193-CDS-S-dermatodea_contig93884:211..4361694079911.1380193-CDS-S-dermatodea_contig93884:211..436Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93884 212..436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig93884.17430.1prot_S-dermatodea_contig93884.17430.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig93884 212..436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig93884.17430.1

>prot_S-dermatodea_contig93884.17430.1 ID=prot_S-dermatodea_contig93884.17430.1|Name=mRNA_S-dermatodea_contig93884.17430.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=75bp
MCDMFADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRL
MHWLWRRERQNLARYLQSVCSEVR*
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mRNA from alignment at S-dermatodea_contig93884:197..436+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig93884.17430.1 ID=mRNA_S-dermatodea_contig93884.17430.1|Name=mRNA_S-dermatodea_contig93884.17430.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at S-dermatodea_contig93884:197..436+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGAGCGCGCTGATGTGCGACATGTTCGCGGACGAGCCCTTCCTGGA TTTCGTGGTCGCCGAAGACCTCCTGGCTCACGCCATGCAGGACACCTCCC TCCCCGACGTGCTGACGGCCATGCTCTTTCACAAGGGCTTCACTGCGCTC ACGACGTACAGGCTGATGCACTGGCTGTGGCGGAGGGAGAGGCAGAACCT CGCCCGATACCTGCAGTCCGTGTGTTCCGAGGTGAGATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig93884:197..436+

>mRNA_S-dermatodea_contig93884.17430.1 ID=mRNA_S-dermatodea_contig93884.17430.1|Name=mRNA_S-dermatodea_contig93884.17430.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at S-dermatodea_contig93884:197..436+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGCGACATGTTCGCGGACGAGCCCTTCCTGGATTTCGTGGTCGCCGA
AGACCTCCTGGCTCACGCCATGCAGGACACCTCCCTCCCCGACGTGCTGA
CGGCCATGCTCTTTCACAAGGGCTTCACTGCGCTCACGACGTACAGGCTG
ATGCACTGGCTGTGGCGGAGGGAGAGGCAGAACCTCGCCCGATACCTGCA
GTCCGTGTGTTCCGAGGTGAGATGAATGTGCGACATGTTCGCGGACGAGC
CCTTCCTGGATTTCGTGGTCGCCGAAGACCTCCTGGCTCACGCCATGCAG
GACACCTCCCTCCCCGACGTGCTGACGGCCATGCTCTTTCACAAGGGCTT
CACTGCGCTCACGACGTACAGGCTGATGCACTGGCTGTGGCGGAGGGAGA
GGCAGAACCTCGCCCGATACCTGCAGTCCGTGTGTTCCGAGGTGAGATGA
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