mRNA_S-dermatodea_contig9386.17428.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9386.17428.1
Unique NamemRNA_S-dermatodea_contig9386.17428.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9386.17428.1 vs. uniprot
Match: D7FIR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR8_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 2.470e-46
Identity = 68/113 (60.18%), Postives = 89/113 (78.76%), Query Frame = 1
Query:    1 AGFFRRREGNILASCNLEYFMSWSTLCVHVMAFFVRMYRMWRILVKHDDKMWRSENQILLLSSVSLIPVAATWAIPQTGEFDEVANKCATSPVSQFITLGLDAWGFFGIGFLW 339
            +G+ RR  G+ILA+C+ E F+SWSTLCVH ++FF+R+YR WRIL+KHDDKMW + +QIL +SS+SLIPV ATWA+P TG FDE AN C+T+  S  + LG+DA GF  I +LW
Sbjct:   71 SGYIRREAGDILAACDFERFLSWSTLCVHTVSFFIRVYRTWRILIKHDDKMWHTGHQILFMSSLSLIPVVATWAVPHTGYFDEAANTCSTTTFSAIVVLGMDALGFLAICYLW 183          
BLAST of mRNA_S-dermatodea_contig9386.17428.1 vs. uniprot
Match: A0A6H5KAT5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT5_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 9.470e-42
Identity = 68/107 (63.55%), Postives = 87/107 (81.31%), Query Frame = 1
Query:   19 REGNILASCNLEYFMSWSTLCVHVMAFFVRMYRMWRILVKHDDKMWRSENQILLLSSVSLIPVAATWAIPQTGEFDEVANKCATSPVSQFITLGLDAWGFFGIGFLW 339
            R G+ILA+C+ E F+SWSTLCVH +AFF+R+YRMWRIL+KHDD+MW + +QIL +SS+SLIPV ATWA+P TG FDEVAN C+T+  S  + LG+DA GF  I +LW
Sbjct:   66 RPGDILAACDFERFLSWSTLCVHTVAFFIRVYRMWRILIKHDDQMWHTGHQILFMSSLSLIPVVATWAVPHTGYFDEVANTCSTTTFSTIVVLGMDALGFLAICYLW 172          
BLAST of mRNA_S-dermatodea_contig9386.17428.1 vs. uniprot
Match: A0A6H5JJQ0_9PHAE (RGS domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ0_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 6.220e-33
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 1
Query:    4 GFFRRREGNILASCNLEYFMSWSTLCVHVMAFFVRMYRMWRILVKHDDKMWRSENQILLLSSVSLIPVAATWAIPQTGEFDEVANKCATSPVSQFITLGLDAWGFFGIGFLW 339
            G FRR EG+ILA C LE  ++W  LC H+ AFF+R+YRMWRILVKHD+ MW ++ QI+LLSS+SL P      +P    FDE  N C T+  S+ +TL ++A GF+ I ++W
Sbjct:   71 GLFRRSEGDILAKCYLERLLAWPALCTHMFAFFIRVYRMWRILVKHDENMWPAKYQIMLLSSISLTPALVALLVPGAYVFDETVNLCTTTSTSRTVTLAMNAVGFYTICYIW 182          
BLAST of mRNA_S-dermatodea_contig9386.17428.1 vs. uniprot
Match: D7FTZ9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ9_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 9.170e-30
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 1
Query:    4 GFFRRREGNILASCNLEYFMSWSTLCVHVMAFFVRMYRMWRILVKHDDKMWRSENQILLLSSVSLIPVAATWAIPQTGEFDEVANKCATSPVSQFITLGLDAWGFFGIGFLW 339
            GF  R +G++LA C+LE  ++WSTLC+H+ AFF+R+Y MWRI+V+HD+ +   + QI LLSS+SL+P      +P    FDE  N C T+  S+ + LG++A GF+ I FLW
Sbjct:   71 GFVHRSKGDLLAECSLEKLLTWSTLCIHMFAFFIRVYLMWRIMVRHDEDVGSPKGQIFLLSSISLVPPLIALLVPGAYVFDETINSCNTTSTSRTVGLGMNAVGFYTICFLW 182          
BLAST of mRNA_S-dermatodea_contig9386.17428.1 vs. uniprot
Match: D7FTZ6_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ6_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 3.510e-29
Identity = 53/113 (46.90%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    1 AGFFRRREGNILASCNLEYFMSWSTLCVHVMAFFVRMYRMWRILVKHDDKMWRSENQILLLSSVSLIPVAATWAIPQTGEFDEVANKCATSPVSQFITLGLDAWGFFGIGFLW 339
            +G   R EG+ LA C ++  +SWSTL VH+M+F VR+YRMWRIL+KHDD MW ++ Q++++SS+SL P+ A   +P    FDE  N C T+  S+ + L ++A GF+ I +LW
Sbjct:   54 SGLIPRNEGDFLAICYIDTTLSWSTLAVHIMSFAVRVYRMWRILIKHDDSMWPAKYQVMVMSSISLGPLLAAVLVPDLHFFDETVNSCNTTTDSRNVVLAMNALGFYLICYLW 166          
BLAST of mRNA_S-dermatodea_contig9386.17428.1 vs. uniprot
Match: A0A6H5K025_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K025_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 7.270e-28
Identity = 58/138 (42.03%), Postives = 78/138 (56.52%), Query Frame = 1
Query:    4 GFFRRREGNILASCNLEYFMSWSTLCVHVMAFFVRMYRMWRILVKHDDKMW-----------------RSEN---------QILLLSSVSLIPVAATWAIPQTGEFDEVANKCATSPVSQFITLGLDAWGFFGIGFLW 339
            G  RR EG++LA C LE F++WS LC H+ AFF+R+YRMWRILVKHDD MW                 RS +         QI+LLSS+SL+P      +P    FDE  N C T+  S+ + L ++  GF+ + +LW
Sbjct:  172 GLIRRSEGDLLAKCYLERFLAWSALCTHIFAFFIRVYRMWRILVKHDDSMWPAKFLSVTFALDKVDLSRSTSPVLTTPVRYQIMLLSSISLVPPLVALLVPGAYVFDETVNSCNTTSTSRNVVLAMNVVGFYTMCYLW 309          
BLAST of mRNA_S-dermatodea_contig9386.17428.1 vs. uniprot
Match: A0A6H5KB09_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB09_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 4.670e-27
Identity = 59/130 (45.38%), Postives = 73/130 (56.15%), Query Frame = 1
Query:   52 EYFMSWSTLCVHVMAFFVRMYRMWRILVKHDDKMW----------------------------------RSENQILLLSSVSLIPVAATWAIPQTGEFDEVANKCATSPVSQFITLGLDAWGFFGIGFLW 339
            + F++WSTLCVH +AFF R+YRMWRIL KHDD+MW                                  R  +QIL +SS+SLIPV A WAIP TG+FDEV N C T  VS  + LG++  GF  I +LW
Sbjct:    4 QSFLAWSTLCVHTVAFFFRVYRMWRILTKHDDQMWHTVREYQLSERFGRLDARRMRHLLCASYISFSMQRHSDQILSMSSLSLIPVVAAWAIPNTGDFDEVENACFTLSVSTVVILGMNGLGFLMIFYLW 133          
BLAST of mRNA_S-dermatodea_contig9386.17428.1 vs. uniprot
Match: D7FU03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU03_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.720e-17
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    4 GFFRRREGNILASCNLEYFMSWSTLCVHVMAFFVRMYRMWRILVKHDDKMW 156
            G  RR EG+ILA C LE F++WS LC H+ AFF+R+YRMWRILVKHD+ MW
Sbjct:   71 GLIRRTEGDILAKCPLERFLAWSALCTHMFAFFIRVYRMWRILVKHDENMW 121          
BLAST of mRNA_S-dermatodea_contig9386.17428.1 vs. uniprot
Match: D7FTZ7_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ7_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.710e-16
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    4 GFFRRREGNILASCNLEYFMSWSTLCVHVMAFFVRMYRMWRILVKHDDKMWRSENQILLLSSVSLIPVAATWAI 225
            G   R EG+ LA+C  E   SWSTL  H+M+F VR+YRMWRIL+KHDD MW ++N +L ++++    +   W +
Sbjct:   71 GIIERSEGDFLANCYFEVIFSWSTLLAHMMSFAVRVYRMWRILIKHDDHMWPAKNVVLAMNALGFYAICYLWFV 144          
BLAST of mRNA_S-dermatodea_contig9386.17428.1 vs. uniprot
Match: D7FIR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR9_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 8.240e-10
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 1
Query:   58 FMSWSTLCVHVMAFFVRMYRMWRILVKHDDKMWRS 162
            F++WSTLCVH  AFF R+YRMWRIL+KHDDKMW +
Sbjct:    3 FLTWSTLCVHTAAFFFRVYRMWRILIKHDDKMWNT 37          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9386.17428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FIR8_ECTSI2.470e-4660.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAT5_9PHAE9.470e-4263.55RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JJQ0_9PHAE6.220e-3350.89RGS domain-containing protein n=3 Tax=Ectocarpus T... [more]
D7FTZ9_ECTSI9.170e-3047.32RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTZ6_ECTSI3.510e-2946.90Similar to regulator of G-protein signaling 16 n=1... [more]
A0A6H5K025_9PHAE7.270e-2842.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB09_9PHAE4.670e-2745.38RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FU03_ECTSI1.720e-1766.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTZ7_ECTSI4.710e-1645.95Similar to regulator of G-protein signaling 16 n=1... [more]
D7FIR9_ECTSI8.240e-1074.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9386contigS-dermatodea_contig9386:1163..8553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog2880.D7FTZ7
Preferred nameRGS1
KEGG koko:K16449
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal anchor
Exons3
Model size342
Cds size342
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9386.17428.1prot_S-dermatodea_contig9386.17428.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9386 1163..8553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925404.7840455-CDS-S-dermatodea_contig9386:1162..12161622925404.7840455-CDS-S-dermatodea_contig9386:1162..1216Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9386 1163..1216 +
1694079911.0347152-CDS-S-dermatodea_contig9386:1162..12161694079911.0347152-CDS-S-dermatodea_contig9386:1162..1216Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9386 1163..1216 +
1622925404.8034527-CDS-S-dermatodea_contig9386:6950..70601622925404.8034527-CDS-S-dermatodea_contig9386:6950..7060Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9386 6951..7060 +
1694079911.0469472-CDS-S-dermatodea_contig9386:6950..70601694079911.0469472-CDS-S-dermatodea_contig9386:6950..7060Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9386 6951..7060 +
1622925404.8133035-CDS-S-dermatodea_contig9386:8375..85531622925404.8133035-CDS-S-dermatodea_contig9386:8375..8553Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9386 8376..8553 +
1694079911.0591235-CDS-S-dermatodea_contig9386:8375..85531694079911.0591235-CDS-S-dermatodea_contig9386:8375..8553Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9386 8376..8553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9386.17428.1

>prot_S-dermatodea_contig9386.17428.1 ID=prot_S-dermatodea_contig9386.17428.1|Name=mRNA_S-dermatodea_contig9386.17428.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=114bp
AGFFRRREGNILASCNLEYFMSWSTLCVHVMAFFVRMYRMWRILVKHDDK
MWRSENQILLLSSVSLIPVAATWAIPQTGEFDEVANKCATSPVSQFITLG
LDAWGFFGIGFLW*
back to top

mRNA from alignment at S-dermatodea_contig9386:1163..8553+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9386.17428.1 ID=mRNA_S-dermatodea_contig9386.17428.1|Name=mRNA_S-dermatodea_contig9386.17428.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7391bp|location=Sequence derived from alignment at S-dermatodea_contig9386:1163..8553+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGGCTTCTTTCGAAGGAGAGAAGGAAACATCCTGGCGTCCTGTAACTT AGAGGTGCGCTGGATTTCGTTGCGTCGAGGTTGTCGGGCTTGAGGCATCG AGTGTGCGACAAGCCGTTGGTTGCTGCAGGCCAGGGGGTTGTTTAGCAAA GTCAAGTACTGCGGTCTGTCCTTTGAAATTCCAAGCGTTGTGTGGATTTT AAAAGGAAATTCCCGCAGGTTTGTGAGTTTTGAATTTTTATCATCTCACT TCGAGTCGGATCGGCAACCATTGACGGGCCGGTCGGTTGTACATGCCGTA ACCTATCAAGCACTCAATCGATCAACCAATCACTCACTTGGCGAGCTGCT GGTGTTGTCCCGCGGCAGCATTCTTTTGTAACAAAACCCTGGGTGGCGAT GTTTTCGTTCCGTGACACGTCTGTAAGGGGTGCGCGTTATCATAGCTCCA CGTACACCCAGAGTTCAAAGTTCCCATTTTTCACTGGGCGTCGTGGAGCG CCGTGCGCCAGCTCCGCACCGTGCCCGGGAGCACTATTTTTTCGCACTGT GTGGTTGCCGTTGCCCTTCTGTATTGCGTCTAGCCACGAGCCAGATCGTA GCATCATCGGTGTGTAAGGCAATCAATGAATACATCAGAAACCCGAGATA ATGTGGATTCCCAGTGGTCCGCCACGTTTTTGAAGCGTTTTTTTGCGTGT CAATTTTTCCCGTTTTCTCCTGCAAACGTCCGGGACGGGGGTTGCTTTTG ATTGATTGATTGATTGATTGGTTGGTTGATTGATTGATTGATTGATTGAT TGATTGATTGATTGATCGATTAATTGACTGATTGATGGATTGATTGATTG ATTGATTGATTGATCGACTAACACACGTAGGACCGATCGGCCCGCCAATG GGTGCCGATCCCGTCCGCGGTCAGGCGAGAAGTCGAGAACTCGAAACCAA ACTCTACGAAATCAGGGATTGCACGGTTAGACTAGAGTGCCAAACACCAA AACCAACAAATCATGCAGGCCTGGAGGATTGGTGTAGGGCATGTGTGGTT GACACCGTACTCGTACGCGTCGCCGACGTGCTGGTGTTATCGCTCTAACT TTGATTGATCGACGACAAGAATACGGAAATTGGTGGCGAAGAATGCACGA TGCGGGGCTTTGTTCAGAGTTAAGGGTGGGGGGTGGAATACAAATTTGCA TATGCACAATTTGTCAACCATCTGAAAAATTGGTGAAATGTTTTGAGTTT CATGCATTTTGTATGCAAAAGCACACTAACTCCAGTATTGAAAATGTAAA AAAAACGAGGTGCGGTATCGCAAAATTTGCTTTTGGCATTCTTTAAGTCA ATTGGACTTAAGCGATTAATAGCTTCATTGGTTTGATATGTACCTTTCTT GTTCAGATCGCGAATCTATTTGCGCCGCGCGTTGCCCTCGATTTACGCAT CAAAATCTGACCATTTGATAACAATCGCCTAATTTAGATGGACAAATCGA GCACTACGCGCAGCTCAAATACGTTCGAGATATGAANNNNNNNNNNCGCG ATCTGAATAAGAAAGGTAGATAACGAACCAATGAAGCTATTAATCGCTTA AGTCCCATTGACGTAAAATACTACCAAAAGCAAATTTTACGATACCGCAC CTCGTTTTTTTTCACATTTTTATGCTGGATTTAGTGCGCTTTTGCTTGCA AAATGCATGAAATTCAAAATATTTCACCATTTTTCCAGATGGTTGACAAT TAATTGTGTATGCACATGCGAATTTGTTCTCCACCCCACACCCTTAAGTT AGCCAACCCTGTAAAGTACCTTTAATCATCTCGATTCCAACCGACCGACC GCTCTTGACATCTCGATTCCAACCGACCGACCGCTCTTGACCTCGGTCTG AATCCACGGATGAAAAACGTCTTGACGCACCCTCAGACCTTCCTCACCAG CTTTCTGCCATTTTCGCTGGCAACCACTCGTACTGGTACTGGTACTGGTA CTGGTATATGTAGAAATAGGTCGATCCCGAGACGTCCGATCTTATCCCGC GATGTTCCGGGGGTTGGATGCCCTTGGTTCGGACGCACTTGCTAACAATT ACTTTTGCTCAATCGCGGCGCAGCAGTGTGTGTTGTGTATGTATGGGTGT GTTTGGCGTGTGTTTGTGGCGCGCGTACGACTGGCGGGCTTTACGCCCAC CCCCTTCTGCGTCCACGTGGGGTCCATCGCAACCCTCCCCGGGACGTGTG CGTTTGTGCGTTTGTGTGTGTGTTGCACACGTACGATCGGCCGCCCTTTT CGGTGTCCCATCTGCAGTCACGAGGGACCAATGGATCATCTTATCTCTCC CTGTGCTTGTGTTATTGTGAAGGACCTTAGTTAACAGGTCCACATTGGCC ACAAATCTCAACCTTGACGAGAAAAATCAAAATAGGCTGGAATGATCGAG ATTTCAAGGTGAACGTTCCTGTGTATGGCCATAATAACCTCGTGTCTTTT CTCTTCGTGAGATTTTTGTTGTAGTTTGGGTATCCTTTTTATAGTATTGT GTTCATGGTCGGAATAGTTGGGTATCCATTATTCATGGTGATGATATATG GTCCTGATTTCAGTGAACCTAACCTCCGTGCTAGGCTTTCTATAGTGTAT ATGAAACCGCACGCCTCGTGGTTGAAATGGTACAATTCGTATTATTAATA ATATACTAATTTGAGTACACCAACGTCCATTAAGTCGATATGAAAGCGCG ACAGCGAGAGTAAGCAAAACAAAATCCGAGAAATCGGCTATAGAGCTGTG GGAGTGCCGAACCCAACGCGTTCGCGATAAAAATCAAAGGTAAGGACTGG GGGTAAGAGAGATGGGATGATCAATCAATCCCTTGTGACCACAGACGGAC CTACCTCGGAAAAGCAAGTCTATGCTATGTGTGCAAAAAACAACGTTCGG AACTCCCGCTGCTTTCCGACCCTTCCGATCTTGCTTAGTCACGCTCTCGC TCTTTCCGCGGCAGAGCTTTAGTTGCAAGACGTGCTGGAACCAGTGATGG GAATCGAAAAAAAAAGGCTTAGATCGATCACTCGACCATGATCGACTTTT TGGGCTCGACCTCTCTCGATCACTTCGATCATGATCGACACTGATCGAAA GATCGATCGCCCCATATTTTTCGATCGATCTTCGATCACAACCATGGATA TGCAGAGGAGAGCAAGAGCCTTTCTTTGGATGAATACCGTTTATTTTTAT TTTTTACAGGGGTAATTTTCCAAAGGCAAGAAGAGCGCATCAAAGCCTTG ACAACAACGCAGCAGTCGAGCAACAGGCACAGCACAGAAGCAGCAACAGC AACAGCAACCTCTCTTAACCCTTTTGGGACTAAAGCTGTTTTCGGGTAGC TGTTTGCTATTATTACTTACCCTTTTCCCATAATAGCAAACAGTTACCCG AAAACAGCCTTAGTCCCAAAAGGGTAAGTAATAATAGCAAACAGGCAACT ATCACAACAATATCTCGTCTGCAACCTCTTCTGGCCATTTAGGTGGTCGG ACCCGCGTGGCGTCCTGTTTTCGACAGCAACCCAACGTAGATGTCCCTTG TGCAACCTCTTATACATGGGTCAGTCGGCTGTGTTCAGACCTCAGACCCG CATTGCGTCATCTCCCCCGCGGGCCAGAAGTTGGAGGCGTTATGGATCAC CTCAGACGCGGGTCTGAGGTGAGTTGATGATTGTTCAGAACTCAGACCCG CATTGCGTCATCTCCCCCGCGGGCCAGAATGGGGAGTTTACGAAAAAATT GGAGGCGTTATGGATCCTGATCGAAAATGATCGAAAGATCGAAAAAAAAT CCGGTATTTCGATCACTGTCGATCAAGGATCGAGATCGATCGAAAACAAA TGCCTCGATCCGGTCACGCTGATCGATCGAATCGATCGACAAATCGGATC GAGAAATACTTGCGATTCCCATCACTGGCTGGAACTGAGCCCACACTTGC TGTCAGCAGCTGAACCCCCGGGGCGGGCGGCTTGCCTTTGAATCTCGGAG TATTAGAAGATGCCCTTTACGAAACCAATTGGAATTTTTCGCACTCCAGA AAGATGCCAAGGAACATGCCGTATACTCTTATATATATATATATATATAG GTTTTGTATAGAGCCTTGTTTTTTAGAGGGGGGTCTTCAAGCACGTGCCG TATTGATGTAGGGCTCTACCCAGTGGTCTTCGGGTGGCCGCGTTCTGAAG GGCGCACCTCGTGCTGTACAAGCGCCGGCACCCTCGCCATTCGCCTCGAA AGACGCACCACACACAGAGCATTTGACACGCTCGGGGGGGGGGGGGCTCC GGATCGGTAGGGTCTATGAGTAGCTTGGGTCGTGCGTCAGACAATCGTTT GCAGACCGATTGACAGCAAGTGTATTTTGATGGCAGGGGGCTGGTAGCGA TGATACCTTCCGGTGCCGGATTGGACCTGGTTCTACTACGGAGGTACACT ATAATCAAGTTATCAGGACCAAATATCACGACCATGGATACCCAACTATT CCGACCATGAATCTGTACCCGAACAACAACAAGAGTCTCGTGAAGAAAAA CAAGGTTCGGTATTGCTATATCATATACACCAGCATCGGCCATGAAAACT TGATAATTCCAGCCTGTTTTTGTTTTCCTAGGTTGAGACTTGCGGCAAAT TTGGACCTGTTAACTATGGTATAGTCCTCCGTTATAGTGTTGTAGTATAC TACTACTGTATACTATACTACTACTGTATACTATAGTTGCCATCGCAGTA TAATTTCGCGTTGCCGGGGGACATTGTAACATTGTAATCACTTTTAATTT TTGCACCTGAAGAGGCCCGCGGGTGCGCCAACCATCCTGAGTACATAGTG TGTGCCATAGTGTATTATCCATGTGCCGCTGTGTTGTGGCTTCTTGATGG AAATGGCATGTTGGTGGCCGCAATGTGGTAGGGAAGCGGTGTGCGTTTCC TCTGCCCCCCCCTCTCCGCGAAAAGTAAAAATGTTTCTAAACATTTCAGT GGGCAGTGGGATCAATTCTATGTTACAGCAAGGTTGGCTCCAAGGCCTTG AGCCGCCGGTTGGGGCTTGAGTTTTGTACAGCACGATGCTGCCACTGTAG AACTCCAGATGCTAGGTCATGCCACGGTATAGAGGTACACGTACAACACC CGAAAGCGACAAAGTAGGACGGCGGCGGCGTTTTTTTCGACGACCCCCCC CCCCCGGCCGCCGCCATGCGTAATCCGCGACATGCTCCGTTGTTGCAATG TGTGTAGCTGATGTCCGATTACCTCATTATTATATCCCACCAACCCCTTC TCGCCCTACCCTCTTTGCTATCGCGGTTGGCTATATGCATAGCTGTCCGT CTCCAAGGGTGTACTCATTCATTGATCGTGCATGCCGTAGTCGTTAGACC ATCTCCAAGGGGGGGGGGCTTCTTTTTTTTTAGTTTTTGTGCTCGACCCG CGCCCGTGACCGTTGGCTTTGCACCCCCTGAAGACAGTATAATAACATAT TTATGAACACAGAGCTAGGATTGGGGCACAACCAATATTTTTGGAAGAGG AAAAAGATGGCCCAATCGAACTCAGTGGAAACGTACGTTATACATTTTGC TATGGGGTGCTGTTATAATACCATCGTACCATATTCAGCATTGTTCACGT AGTGGAAGCCTACATTTATATGATGCTGTTGATTCTGCTAGAATAACCCC CCCCCCCCCGCCCCCCCCTCCTACCCCGGCTCCACCAGTATTTCATGTCG TGGTCGACTTTATGCGTGCACGTGATGGCATTTTTCGTCCGGATGTACCG CATGTGGAGGATTCTCGTCAAGCACGACGACAAGATGTGGCGCTCAGAGT GAGTTTTGTTTGTGCTTTTTTTTTATCGCTTGACCCTTCCCCATCCTGTG ATGGACAAGACACCCGTTTGCGATACTTACAGGATAGTCACGCCATAACC TTGTCCGACGTGCCCAAAGAACCCACGGCGTATCGGTTTTTGGAGTCGTA AACGCAAGGCTGGTGACCAGCTGCTGGTAAAGTCCCTATGGAACGCAGCC TGGCCGGCGAAAACCCGGCATATCGTTCCGTCCCGACATCGTGGGGATGC GCGTGGTCTATGTCCATTTGGATACGACATGCGTTCAACACAGGTATCCC ACCGCCCCGCCCCCCCTTCCCCCGCCCGCGCTCCCACTATGTAGTTTTCG CCCTCTGTTGCTTCTTGTTTTCGCGGGGTGTGCGTAGATAGCAGGAAACC ATTGACGTAAGCACAGTCCCGTATCCTGAGAGGTGGATTCATTGCCAGCT TTGCCGGACGCGTGGATGAATCTCGTCGAAGCACGACGAGCGCGAAACAG TACACCGCAAATAATTTTGCTGTTTAGTCTCTCTCGCACGTGGCCTATAT GATTTTGAAACGACTTTGTTCCCGAATCAACCACAGCAAGCTTTCACCCG CCGACACCCAATCACACTCGCGGTGTTTTGTTTTTTTCGCGCTTCTCCCC CGGCGCGGCCCTTTTGCTGATAGCGTGGCGCGTCCGATCCTCATCCCAGC CTGCAAACCACGGAGGCCTTGCCCCGTCGTTCAACCGTTACCCACGAACC CCTGAAAAACAAAGCAAATCCGTAATCACACAAAGAGCGAGGGCAGAGGT CCGACCTTTTCCAAGGGAGAACGTCCGATCCAAGCTACGCCTACAAGTTT ATGAGTATTTCGATACGCCCCCCCCCCCATCCCCCCCCCCGCGCGCGCCT GATCAATCGCAAAAATAATTCAAATAGGTTCGGCACGGTCTAGTCCGTGC GGATTGCTGTGATATTGACAGCGTAAAACCACAACCGCAAAACGTCGCGC GATCGCCCTCCAGTGTGAGCTGTTATAGCATGTAACCACGGCCACGCCCG TGAGGTGTTTGCGTTGGTAAGAATTGGTGGCCTTGGATGGAGCCCATGTA GAAACAGCAAGAGGGGAAAAAAAGGTACCAGAACCTTCGAAACCCTCCAC GAAATTAACCGCTCTAACAAAACACTCAGGAGCCCGCCCCCCCCTTTACA TCCCTACAATATGTATCGTGCAAAGCGCTGTATTTTCATCATTAAAGTTG ATATCGACGGCGTAAACCACCACCCCCCCCCAAACGCCGCACCTGTCGCC CTACCGTCCCCAGAAACCAGATCCTCCTGCTGTCTAGCGTGAGCCTGATT CCGGTGGCGGCGACGTGGGCCATCCCGCAGACGGGCGAGTTCGACGAGGT GGCTAATAAGTGTGCCACGTCGCCGGTGTCGCAGTTCATCACCCTCGGCC TGGACGCTTGGGGGTTCTTCGGGATAGGGTTCCTCTGGTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9386:1163..8553+

>mRNA_S-dermatodea_contig9386.17428.1 ID=mRNA_S-dermatodea_contig9386.17428.1|Name=mRNA_S-dermatodea_contig9386.17428.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at S-dermatodea_contig9386:1163..8553+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGGCTTCTTTCGAAGGAGAGAAGGAAACATCCTGGCGTCCTGTAACTT
AGAGGCCGGCTTCTTTCGAAGGAGAGAAGGAAACATCCTGGCGTCCTGTA
ACTTAGAGTATTTCATGTCGTGGTCGACTTTATGCGTGCACGTGATGGCA
TTTTTCGTCCGGATGTACCGCATGTGGAGGATTCTCGTCAAGCACGACGA
CAAGATGTGGCGCTCAGATATTTCATGTCGTGGTCGACTTTATGCGTGCA
CGTGATGGCATTTTTCGTCCGGATGTACCGCATGTGGAGGATTCTCGTCA
AGCACGACGACAAGATGTGGCGCTCAGAAAACCAGATCCTCCTGCTGTCT
AGCGTGAGCCTGATTCCGGTGGCGGCGACGTGGGCCATCCCGCAGACGGG
CGAGTTCGACGAGGTGGCTAATAAGTGTGCCACGTCGCCGGTGTCGCAGT
TCATCACCCTCGGCCTGGACGCTTGGGGGTTCTTCGGGATAGGGTTCCTC
TGGTGAAAACCAGATCCTCCTGCTGTCTAGCGTGAGCCTGATTCCGGTGG
CGGCGACGTGGGCCATCCCGCAGACGGGCGAGTTCGACGAGGTGGCTAAT
AAGTGTGCCACGTCGCCGGTGTCGCAGTTCATCACCCTCGGCCTGGACGC
TTGGGGGTTCTTCGGGATAGGGTTCCTCTGGTGA
back to top