mRNA_S-dermatodea_contig9385.17427.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9385.17427.1
Unique NamemRNA_S-dermatodea_contig9385.17427.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9385.17427.1 vs. uniprot
Match: A0A6H5KMU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.170e-18
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 QCEQCGTVYCSNTWVGNPGCFQKDHERGNRRAHTKRG 111
            +CE+CGTVYCSNTWVGNPGCF +DHERGNRR HTKRG
Sbjct:   15 ECEECGTVYCSNTWVGNPGCFIRDHERGNRRKHTKRG 51
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BLAST of mRNA_S-dermatodea_contig9385.17427.1 vs. uniprot
Match: D7FK07_ECTSI (Calmodulin-binding WW domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK07_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.120e-16
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 QCEQCGTVYCSNTWVGNPGCFQKDHERGNRRAHTKRG 111
            +CE+CGTVYCSNTWVGNPGCF +DHERGNRR HTKRG
Sbjct: 3768 ECEECGTVYCSNTWVGNPGCFIRDHERGNRRKHTKRG 3804
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BLAST of mRNA_S-dermatodea_contig9385.17427.1 vs. uniprot
Match: A0A7S4MK78_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MK78_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.120e-9
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    1 QCEQCGTVYCSNTWVGNPGCFQKDHERGNRRAHT 102
            +C +CG VYCS TW+GNPGCF++ H RGNR  H+
Sbjct:   71 RCRECGDVYCSITWLGNPGCFRQMHSRGNRTTHS 104
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BLAST of mRNA_S-dermatodea_contig9385.17427.1 vs. uniprot
Match: A0A7S2NUD7_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NUD7_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.010e-7
Identity = 21/32 (65.62%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    4 CEQCGTVYCSNTWVGNPGCFQKDHERGNRRAH 99
            CE CG VYCS TW+GNPGCF+K H +G R  H
Sbjct:  675 CEDCGEVYCSATWIGNPGCFRKMHVKGERLHH 706
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BLAST of mRNA_S-dermatodea_contig9385.17427.1 vs. uniprot
Match: A0A7S2CNG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CNG6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.160e-7
Identity = 20/28 (71.43%), Postives = 22/28 (78.57%), Query Frame = 1 
Query:   22 VYCSNTWVGNPGCFQKDHERGNRRAHTK 105
            VYCS  W+GNPGCF K H +GNRR HTK
Sbjct:   72 VYCSVKWMGNPGCFAKQHRKGNRRTHTK 99
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9385.17427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KMU5_9PHAE1.170e-1886.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK07_ECTSI1.120e-1686.49Calmodulin-binding WW domain protein n=1 Tax=Ectoc... [more]
A0A7S4MK78_9STRA5.120e-961.76Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2NUD7_9STRA1.010e-765.63Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S2CNG6_9STRA3.160e-771.43Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9385contigS-dermatodea_contig9385:6685..6798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue6.5e-14
Seed eggNOG ortholog2880.D7FK07
EggNOG OGs28ZVB@1,2R6Q0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925404.749092-CDS-S-dermatodea_contig9385:6684..67981622925404.749092-CDS-S-dermatodea_contig9385:6684..6798Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 6685..6798 +
1694079911.0205648-CDS-S-dermatodea_contig9385:6684..67981694079911.0205648-CDS-S-dermatodea_contig9385:6684..6798Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 6685..6798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9385.17427.1prot_S-dermatodea_contig9385.17427.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9385 6685..6798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9385.17427.1

>prot_S-dermatodea_contig9385.17427.1 ID=prot_S-dermatodea_contig9385.17427.1|Name=mRNA_S-dermatodea_contig9385.17427.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=38bp
QCEQCGTVYCSNTWVGNPGCFQKDHERGNRRAHTKRG*
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mRNA from alignment at S-dermatodea_contig9385:6685..6798+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9385.17427.1 ID=mRNA_S-dermatodea_contig9385.17427.1|Name=mRNA_S-dermatodea_contig9385.17427.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=114bp|location=Sequence derived from alignment at S-dermatodea_contig9385:6685..6798+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTGCGAACAATGCGGCACCGTCTACTGTTCGAACACGTGGGTGGGAAA
TCCGGGTTGCTTCCAGAAAGATCACGAGCGAGGCAATCGCCGTGCACACA
CCAAGCGCGGGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9385:6685..6798+

>mRNA_S-dermatodea_contig9385.17427.1 ID=mRNA_S-dermatodea_contig9385.17427.1|Name=mRNA_S-dermatodea_contig9385.17427.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at S-dermatodea_contig9385:6685..6798+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTGCGAACAATGCGGCACCGTCTACTGTTCGAACACGTGGGTGGGAAA
TCCGGGTTGCTTCCAGAAAGATCACGAGCGAGGCAATCGCCGTGCACACA
CCAAGCGCGGGTAACAGTGCGAACAATGCGGCACCGTCTACTGTTCGAAC
ACGTGGGTGGGAAATCCGGGTTGCTTCCAGAAAGATCACGAGCGAGGCAA
TCGCCGTGCACACACCAAGCGCGGGTAA
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