mRNA_S-dermatodea_contig9385.17425.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9385.17425.1
Unique NamemRNA_S-dermatodea_contig9385.17425.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9385.17425.1 vs. uniprot
Match: D7FK07_ECTSI (Calmodulin-binding WW domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK07_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 4.650e-44
Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 2 
Query:    2 EPPGVPFRPMIRDRRTGALIQAWPQLEKELLEAAGAEPGYCMHCRTEKATRACDQCVVDRRARTKWGGDKWHLCFVCFAERHSDKPELASHTFT 283
            +PP  PFRPMIRDR +GAL+QAWPQLE+ELLEA GA PGYCM C+TEKATR CDQC    R +  WGG K+HLCFVCFAERH+D PEL SHTFT
Sbjct: 3224 DPPDEPFRPMIRDRLSGALVQAWPQLERELLEAVGAAPGYCMQCKTEKATRVCDQCTFGGRKKPAWGGGKYHLCFVCFAERHADTPELTSHTFT 3317
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BLAST of mRNA_S-dermatodea_contig9385.17425.1 vs. uniprot
Match: A0A7S2NUD7_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NUD7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.530e-7
Identity = 34/86 (39.53%), Postives = 42/86 (48.84%), Query Frame = 2 
Query:    2 EPPGVPFRPMIRDRRTGALIQAWPQLEKELLEAAGAEPGYCMHCRTEKATRACDQCVVDRRARTKWGGDKWHLCFVCFAERHSDKP 259
            E P V +RPM+ +RR+  LIQAWP L K        E   C  C  E ATRAC     +  A +  G      CF+CF E H  +P
Sbjct:  337 EEPAV-YRPMVPERRSQKLIQAWPLLGKATRSQNKYEQ-MCAKCADEIATRACS--CSECAANSASGRKSKPFCFICFHEEHRGQP 418
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9385.17425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK07_ECTSI4.650e-4473.40Calmodulin-binding WW domain protein n=1 Tax=Ectoc... [more]
A0A7S2NUD7_9STRA4.530e-739.53Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9385contigS-dermatodea_contig9385:492..2251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue6.5e-33
Seed eggNOG ortholog2880.D7FK07
EggNOG OGs28ZVB@1,2R6Q0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size292
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9385.17425.1prot_S-dermatodea_contig9385.17425.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9385 520..2251 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925404.5808663-UTR-S-dermatodea_contig9385:491..5191622925404.5808663-UTR-S-dermatodea_contig9385:491..519Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9385 492..519 +
1694079910.898687-UTR-S-dermatodea_contig9385:491..5191694079910.898687-UTR-S-dermatodea_contig9385:491..519Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9385 492..519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925404.5961118-CDS-S-dermatodea_contig9385:519..5881622925404.5961118-CDS-S-dermatodea_contig9385:519..588Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 520..588 +
1694079910.9108002-CDS-S-dermatodea_contig9385:519..5881694079910.9108002-CDS-S-dermatodea_contig9385:519..588Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 520..588 +
1622925404.607738-CDS-S-dermatodea_contig9385:1748..18891622925404.607738-CDS-S-dermatodea_contig9385:1748..1889Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 1749..1889 +
1694079910.9233885-CDS-S-dermatodea_contig9385:1748..18891694079910.9233885-CDS-S-dermatodea_contig9385:1748..1889Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 1749..1889 +
1622925404.6211164-CDS-S-dermatodea_contig9385:2197..22511622925404.6211164-CDS-S-dermatodea_contig9385:2197..2251Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 2198..2251 +
1694079910.9324598-CDS-S-dermatodea_contig9385:2197..22511694079910.9324598-CDS-S-dermatodea_contig9385:2197..2251Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 2198..2251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9385.17425.1

>prot_S-dermatodea_contig9385.17425.1 ID=prot_S-dermatodea_contig9385.17425.1|Name=mRNA_S-dermatodea_contig9385.17425.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp
MIRDRRTGALIQAWPQLEKELLEAAGAEPGYCMHCRTEKATRACDQCVVD
RRARTKWGGDKWHLCFVCFAERHSDKPELASHTFTATQ
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mRNA from alignment at S-dermatodea_contig9385:492..2251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9385.17425.1 ID=mRNA_S-dermatodea_contig9385.17425.1|Name=mRNA_S-dermatodea_contig9385.17425.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1760bp|location=Sequence derived from alignment at S-dermatodea_contig9385:492..2251+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGCCGCCGGGCGTGCCGTTTCGCCCAATGATACGCGACCGGAGAACCG
GCGCCCTCATTCAGGCCTGGCCGCAGCTCGAGAAAGAACTTTTGGAGGTA
TGTACGGCGCATGTCCGTGTGTGTTTGTTCTGGTGCTCTAAGGCCGGTTT
AAGTAAACCCAACAATCTAGCAAAATTCGATATCTGAATTGGACATTGTG
AACGTCGTTTTATGGAGCGATCCTGCGATGCCTCAAAGGCCGATTGCAAT
GCAAACAAGCTAGTGCATGCGAAGCGCTCATTCTCGGGCTCAATGGGTAG
TACGTTGAGTCAATGACACTCCCGATGCCGCGTATAGGGTTCAAGAGCAA
CCTTGGCCGCCAGGGGTGGAAATTAGCTACAACGCGAGGAAAATTTCGAA
TCCAGTTGGTGGAATTCAGCAGGGATATATCATGACTGTGACCACGCCTG
GCGCGGTCGCCACTTGCCCCCCCCAAATGCCAAACGTCGCTTGCTACCTT
TGGGCCTGCCATCATCAATAGTCGTTTTATCGCCGTGTGTCGAGGTGTTC
TTGTGACGCTCGGAGGGCTGCGCAGCGCCTCCTGCACACCCGCGCTGGTA
CTTACACCGCACGGTATGAATTGATTATTTCGAACTGGAAGCAACACCTT
AATTACACGAAGTCCGACGCAAAGCGTCCCGTAAATTTGCCAACGCTTCC
AATTGTGTGAAGTTTTGGATCGATTGAGATGGCCCGTCCGATATTTTAGC
TGCTGCTGTGCGGATGTATGAGTCTTTGTAGCCGTCGCCATCAGAGCTAC
GTTTTGGTGGGACGCGTCTCAGCTTGGGCGGCATTGAATTTTTTTCTTAC
CTGTTCAGCCGCCAAGAGCCGACCGCCAAACACGGCTGGTATGCACGTCC
ACTTATTGTGCAGATAAGCACTATCCAGCGCACCTCGACAGCCTGCCTCG
CATGGGGAGCGACACTCTCGTGCTGTCCCCTGTTTACAATCGAGTATCGC
TCTGGTGTCGAACCGATAACAATCCTCCCTAACGCACCGTCACATCTGAG
GTCCGCGGCGATGTCACCGTTATTGGAGCGTCTTATGCTGAAGGGGATCG
TGCCCAGCCGTCTCAGAATGGGGAACGGGGCGTGGAAAATTCGCGCCCAG
CTGGGTTTCCGGTCAGTGTGTCCCCGGTCGGGCGCGATTCCTGAAATATT
GAGATAAACAAGTATTCCCACTCGCTTTTCGTGTCCGTGATGCGATTCTT
TGCCCAGGCTGCCGGCGCCGAGCCGGGTTACTGCATGCATTGCAGGACCG
AGAAGGCCACCCGCGCGTGCGACCAATGTGTCGTTGATCGCCGCGCAAGA
ACCAAGTGGGGAGGCGACAAGTGGCACCTGTGCTTTGTCTGCTTCGCGGT
GAGTTGAGACTCAGTGTACAACGGTGCCACTGGTGTGCTTCCGTCCCCTC
TTGTGATTTTTATAAGTCTCAAGAAAATGAAAGAATGAACCGCTGCCTCG
GGTTGCGTACCGAACGTCTTTTCTTGCCTCGGGTTGCGTACCGAACGTCT
TTTCTTGTTATTGGACCGGCCCGGTCGACACCAAAGAGACAGCCGGCCGC
CCTGAACCTGACCCACACTTGCCGTAGACGCCAGTCTGACCATAAGAGAT
AACCCTCGATACCTCTTTTCACTATTTTCCCATTGCCCCGCGTGCGAAAT
CGTCAGGAGCGCCACTCGGACAAGCCGGAGCTCGCGTCGCACACGTTTAC
CGCTACTCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9385:492..2251+

>mRNA_S-dermatodea_contig9385.17425.1 ID=mRNA_S-dermatodea_contig9385.17425.1|Name=mRNA_S-dermatodea_contig9385.17425.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig9385:492..2251+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATACGCGACCGGAGAACCGGCGCCCTCATTCAGGCCTGGCCGCAGCT
CGAGAAAGAACTTTTGGAGATGATACGCGACCGGAGAACCGGCGCCCTCA
TTCAGGCCTGGCCGCAGCTCGAGAAAGAACTTTTGGAGGCTGCCGGCGCC
GAGCCGGGTTACTGCATGCATTGCAGGACCGAGAAGGCCACCCGCGCGTG
CGACCAATGTGTCGTTGATCGCCGCGCAAGAACCAAGTGGGGAGGCGACA
AGTGGCACCTGTGCTTTGTCTGCTTCGCGGCTGCCGGCGCCGAGCCGGGT
TACTGCATGCATTGCAGGACCGAGAAGGCCACCCGCGCGTGCGACCAATG
TGTCGTTGATCGCCGCGCAAGAACCAAGTGGGGAGGCGACAAGTGGCACC
TGTGCTTTGTCTGCTTCGCGGAGCGCCACTCGGACAAGCCGGAGCTCGCG
TCGCACACGTTTACCGCTACTCAGGAGCGCCACTCGGACAAGCCGGAGCT
CGCGTCGCACACGTTTACCGCTACTCAG
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