mRNA_S-dermatodea_contig93817.17421.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig93817.17421.1
Unique NamemRNA_S-dermatodea_contig93817.17421.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig93817.17421.1 vs. uniprot
Match: D7G7B3_ECTSI (1-aminocyclopropane-1-carboxylate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7B3_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.760e-16
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:    4 REARDADVEIRVLLITSPHNPTGRLYSAKALITAIRWARRRGLHIVVDEV 153
            R AR + VEIRVLLITSPHNPTGR+YS KAL++A+ W RRRGL IVVDEV
Sbjct:  319 RRARSSGVEIRVLLITSPHNPTGRMYSPKALLSAVSWGRRRGLQIVVDEV 368          
BLAST of mRNA_S-dermatodea_contig93817.17421.1 vs. uniprot
Match: A0A430L9V1_9HYPO (Uncharacterized protein n=1 Tax=Fusarium euwallaceae TaxID=1147111 RepID=A0A430L9V1_9HYPO)

HSP 1 Score: 56.2 bits (134), Expect = 8.070e-8
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    4 REARDADVEIRVLLITSPHNPTGRLYSAKALITAIRWARRRGLHIVVDEV 153
            REA +A+++IR LLI++PHNP GR Y A+ L   + +  R GLH V DE+
Sbjct:  128 REAEEANIKIRALLISNPHNPLGRCYPAETLEEFMSFCNRHGLHFVSDEI 177          
BLAST of mRNA_S-dermatodea_contig93817.17421.1 vs. uniprot
Match: A0A7S4A4Z8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4Z8_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.150e-7
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   28 EIRVLLITSPHNPTGRLYSAKALITAIRWARRRGLHIVVDEV 153
            E + LL+ SPHNP G ++ A AL   +RWARRRG+ +VVDEV
Sbjct:  227 EAKCLLLASPHNPCGTVFPADALRACVRWARRRGVQVVVDEV 268          
BLAST of mRNA_S-dermatodea_contig93817.17421.1 vs. uniprot
Match: A0A2D3UWD2_9PEZI (Related to 1-aminocyclopropane-1-carboxylate synthase, and related proteins n=1 Tax=Ramularia collo-cygni TaxID=112498 RepID=A0A2D3UWD2_9PEZI)

HSP 1 Score: 55.1 bits (131), Expect = 2.150e-7
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   28 EIRVLLITSPHNPTGRLYSAKALITAIRWARRRGLHIVVDEV 153
            E+R +LIT+PHNP+GR YS +AL  A R+  +  LH++VDE+
Sbjct:  182 EVRAVLITNPHNPSGRCYSVEALAMAARFCEKHALHLIVDEI 223          
BLAST of mRNA_S-dermatodea_contig93817.17421.1 vs. uniprot
Match: A0A428RIL0_9HYPO (Aminotran_1_2 domain-containing protein (Fragment) n=1 Tax=Fusarium ambrosium TaxID=131363 RepID=A0A428RIL0_9HYPO)

HSP 1 Score: 54.7 bits (130), Expect = 2.180e-7
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:    4 REARDADVEIRVLLITSPHNPTGRLYSAKALITAIRWARRRGLHIVVDEV 153
            REA +A+++IR LLI++PHNP GR Y  + L   + +  R GLH V DE+
Sbjct:  195 REAEEANIKIRALLISNPHNPLGRCYPTETLEEFMSFCNRHGLHFVSDEI 244          
BLAST of mRNA_S-dermatodea_contig93817.17421.1 vs. uniprot
Match: A0A5M9MEA8_9EURO (Aminotran_1_2 domain-containing protein n=2 Tax=Aspergillus tanneri TaxID=1220188 RepID=A0A5M9MEA8_9EURO)

HSP 1 Score: 52.8 bits (125), Expect = 1.420e-6
Identity = 21/51 (41.18%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 YREARDADVEIRVLLITSPHNPTGRLYSAKALITAIRWARRRGLHIVVDEV 153
            + +AR  D  +R +++T+PHNP+GR YS  AL +A R+ + + +H++ DEV
Sbjct:  587 FDDARRRDKSVRAVVLTNPHNPSGRCYSLSALGSAARFCQEKNIHLISDEV 637          
BLAST of mRNA_S-dermatodea_contig93817.17421.1 vs. uniprot
Match: A0A0D2DMT6_9EURO (Aminotran_1_2 domain-containing protein n=1 Tax=Exophiala oligosperma TaxID=215243 RepID=A0A0D2DMT6_9EURO)

HSP 1 Score: 51.2 bits (121), Expect = 4.920e-6
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   16 DADVEIRVLLITSPHNPTGRLYSAKALITAIRWARRRGLHIVVDEV 153
            +A   +R ++IT+PHNP GR YSA  L++   +  RRGLH++ DEV
Sbjct:  156 EAACPVRAVVITNPHNPLGRCYSADNLLSIAEFCGRRGLHLISDEV 201          
BLAST of mRNA_S-dermatodea_contig93817.17421.1 vs. uniprot
Match: A0A7R8AEN0_ASPKA (Aminotran_1_2 domain-containing protein n=1 Tax=Aspergillus kawachii TaxID=1069201 RepID=A0A7R8AEN0_ASPKA)

HSP 1 Score: 50.4 bits (119), Expect = 8.170e-6
Identity = 21/51 (41.18%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    1 YREARDADVEIRVLLITSPHNPTGRLYSAKALITAIRWARRRGLHIVVDEV 153
            + EA+   ++++ LL+ SPHNP GR YS  AL   +++  R GLH++ DE+
Sbjct:  169 WAEAKRKGLQVKALLLCSPHNPLGRCYSDDALKEYMKFCSRNGLHLISDEI 219          
BLAST of mRNA_S-dermatodea_contig93817.17421.1 vs. uniprot
Match: A0A0N1HH78_9EURO (1-aminocyclopropane-1-carboxylate synthase 1 n=1 Tax=Phialophora attinorum TaxID=1664694 RepID=A0A0N1HH78_9EURO)

HSP 1 Score: 50.4 bits (119), Expect = 9.090e-6
Identity = 23/51 (45.10%), Postives = 31/51 (60.78%), Query Frame = 1
Query:    1 YREARDADVEIRVLLITSPHNPTGRLYSAKALITAIRWARRRGLHIVVDEV 153
            Y +AR   V IR LL+ SPHNP GR YS  AL    ++  +  LH++ DE+
Sbjct:   89 YDQARQNGVNIRALLLCSPHNPLGRCYSQAALRGLAKFCEKNDLHLISDEI 139          
BLAST of mRNA_S-dermatodea_contig93817.17421.1 vs. uniprot
Match: A0A1M3TEG5_ASPLC (Aminotran_1_2 domain-containing protein n=10 Tax=Aspergillus TaxID=5052 RepID=A0A1M3TEG5_ASPLC)

HSP 1 Score: 50.4 bits (119), Expect = 9.230e-6
Identity = 21/51 (41.18%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    1 YREARDADVEIRVLLITSPHNPTGRLYSAKALITAIRWARRRGLHIVVDEV 153
            + EA+   ++++ LL+ SPHNP GR YS  AL   +++  R GLH++ DE+
Sbjct:  169 WAEAKRKGLQVKALLLCSPHNPLGRCYSDDALKEYMKFCSRNGLHLISDEI 219          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig93817.17421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G7B3_ECTSI1.760e-1676.001-aminocyclopropane-1-carboxylate synthase n=2 Tax... [more]
A0A430L9V1_9HYPO8.070e-850.00Uncharacterized protein n=1 Tax=Fusarium euwallace... [more]
A0A7S4A4Z8_9STRA1.150e-757.14Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A2D3UWD2_9PEZI2.150e-752.38Related to 1-aminocyclopropane-1-carboxylate synth... [more]
A0A428RIL0_9HYPO2.180e-748.00Aminotran_1_2 domain-containing protein (Fragment)... [more]
A0A5M9MEA8_9EURO1.420e-641.18Aminotran_1_2 domain-containing protein n=2 Tax=As... [more]
A0A0D2DMT6_9EURO4.920e-647.83Aminotran_1_2 domain-containing protein n=1 Tax=Ex... [more]
A0A7R8AEN0_ASPKA8.170e-641.18Aminotran_1_2 domain-containing protein n=1 Tax=As... [more]
A0A0N1HH78_9EURO9.090e-645.101-aminocyclopropane-1-carboxylate synthase 1 n=1 T... [more]
A0A1M3TEG5_ASPLC9.230e-641.18Aminotran_1_2 domain-containing protein n=10 Tax=A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig93817contigS-dermatodea_contig93817:386..550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog529818.AMSG_10089T0
KEGG rclassRC00021,RC01124
KEGG koko:K01762,ko:K10408,ko:K20772
KEGG ReactionR00179
KEGG Pathwayko00270,ko01100,ko01110,ko04016,ko05016,map00270,map01100,map01110,map04016,map05016
KEGG ModuleM00368
EggNOG free text desc.1-aminocyclopropane-1-carboxylate synthase activity
EggNOG OGsCOG0436@1,KOG0256@2759
EC4.4.1.14
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925404.3033023-CDS-S-dermatodea_contig93817:385..5501622925404.3033023-CDS-S-dermatodea_contig93817:385..550Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93817 386..550 -
1694079910.6839595-CDS-S-dermatodea_contig93817:385..5501694079910.6839595-CDS-S-dermatodea_contig93817:385..550Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93817 386..550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig93817.17421.1prot_S-dermatodea_contig93817.17421.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig93817 386..550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig93817.17421.1

>prot_S-dermatodea_contig93817.17421.1 ID=prot_S-dermatodea_contig93817.17421.1|Name=mRNA_S-dermatodea_contig93817.17421.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=55bp
YREARDADVEIRVLLITSPHNPTGRLYSAKALITAIRWARRRGLHIVVDE
VRKT*
back to top

mRNA from alignment at S-dermatodea_contig93817:386..550-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig93817.17421.1 ID=mRNA_S-dermatodea_contig93817.17421.1|Name=mRNA_S-dermatodea_contig93817.17421.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at S-dermatodea_contig93817:386..550- (Saccorhiza dermatodea SderLu1190fm monoicous)
TACAGGGAAGCCAGGGATGCCGACGTAGAGATTCGTGTTTTACTGATCAC GTCTCCCCACAACCCCACCGGGCGGCTGTACTCGGCAAAGGCCCTGATCA CTGCGATTCGATGGGCTCGCAGGAGGGGACTGCACATCGTCGTGGACGAG GTGCGCAAAACATAA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig93817:386..550-

>mRNA_S-dermatodea_contig93817.17421.1 ID=mRNA_S-dermatodea_contig93817.17421.1|Name=mRNA_S-dermatodea_contig93817.17421.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at S-dermatodea_contig93817:386..550- (Saccorhiza dermatodea SderLu1190fm monoicous)
TACAGGGAAGCCAGGGATGCCGACGTAGAGATTCGTGTTTTACTGATCAC
GTCTCCCCACAACCCCACCGGGCGGCTGTACTCGGCAAAGGCCCTGATCA
CTGCGATTCGATGGGCTCGCAGGAGGGGACTGCACATCGTCGTGGACGAG
GTGCGCAAAACATAATACAGGGAAGCCAGGGATGCCGACGTAGAGATTCG
TGTTTTACTGATCACGTCTCCCCACAACCCCACCGGGCGGCTGTACTCGG
CAAAGGCCCTGATCACTGCGATTCGATGGGCTCGCAGGAGGGGACTGCAC
ATCGTCGTGGACGAGGTGCGCAAAACATAA
back to top