mRNA_S-dermatodea_contig9381.17420.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9381.17420.1
Unique NamemRNA_S-dermatodea_contig9381.17420.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9381.17420.1 vs. uniprot
Match: A0A6H5KC85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC85_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 1.370e-59
Identity = 98/137 (71.53%), Postives = 118/137 (86.13%), Query Frame = 1
Query:    1 MKTIPLSRVKDRASFEFVMKEVDLLKSLDHPNIVRLQEVYVTPSHLHVAMDLIEGGNLAARYKFEGEERAAVIIRQIVRALRYLHDRNIAHRDLKLENILLETKADKGNTPSVKLVDFGLSAIYEENGVSTDVLGSW 411
            MKT+ LS VK   +F+F+M EVDLLK+LDHPNIVRLQEVY++ SHL +AMDLI GGNLA  Y+ +GE  AA+IIRQIVRALRYLHDR+IAHRDLKLEN+L+ET   +G+ P++KL+DFGLSAIY ENGVSTD+LGSW
Sbjct:    1 MKTVKLSSVKSEKAFDFIMNEVDLLKTLDHPNIVRLQEVYMSDSHLFMAMDLITGGNLAGSYRCDGEHTAAIIIRQIVRALRYLHDRHIAHRDLKLENVLIETGDKEGSPPAIKLIDFGLSAIYRENGVSTDILGSW 137          
BLAST of mRNA_S-dermatodea_contig9381.17420.1 vs. uniprot
Match: A0A835ZF12_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF12_9STRA)

HSP 1 Score: 157 bits (398), Expect = 5.220e-42
Identity = 80/137 (58.39%), Postives = 99/137 (72.26%), Query Frame = 1
Query:    1 MKTIPLSRVKDRASFEFVMKEVDLLKSLDHPNIVRLQEVYVTPSHLHVAMDLIEGGNLAARYKFEGEERAAVIIRQIVRALRYLHDRNIAHRDLKLENILLETKADKGNTPSVKLVDFGLSAIYEENGVSTDVLGSW 411
            +KT+ L RV+D+ SF+F MKEVD++K+LDHPNIVRLQEV+ TP +L + MDL  GGNL   YKF+ E  AA I+R IV A+RY HDR IAHRDLKL+NI+ E     G    VKLVDFGLS  Y E  +  DV+G+W
Sbjct:  485 LKTVELDRVRDKKSFDFFMKEVDIMKNLDHPNIVRLQEVFHTPDYLFLVMDLCTGGNLLQSYKFKTERAAADIVRNIVNAIRYCHDRGIAHRDLKLDNIVYE---HNGPDAEVKLVDFGLSCHYTEAQLEHDVVGTW 618          
BLAST of mRNA_S-dermatodea_contig9381.17420.1 vs. uniprot
Match: A0A6H5KFV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFV6_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 8.640e-39
Identity = 70/137 (51.09%), Postives = 98/137 (71.53%), Query Frame = 1
Query:    1 MKTIPLSRVKDRASFEFVMKEVDLLKSLDHPNIVRLQEVYVTPSHLHVAMDLIEGGNLAARYKFEGEERAAVIIRQIVRALRYLHDRNIAHRDLKLENILLETKADKGNTPSVKLVDFGLSAIYEENGVSTDVLGSW 411
            +KTI L  V+    +EF++ E++++K LDHPNI R+QEV+ TP H ++ MDL  GG++ ARYKF  E+  A I+ +++ ALRY HDRNIAHRD+KLENI  E+ AD      VKLVDFGLSA +++  +  D++GSW
Sbjct:   75 LKTIELKDVETVEQYEFLLNEIEIMKQLDHPNIARVQEVFHTPDHYYMVMDLYTGGDMYARYKFRSEDETAKIVNKLINALRYCHDRNIAHRDIKLENICFESMADDAE---VKLVDFGLSASFKDEQMRHDLVGSW 208          
BLAST of mRNA_S-dermatodea_contig9381.17420.1 vs. uniprot
Match: D8LG93_ECTSI (Calcium-dependent protein kinase 2 (PfCDPK2) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG93_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.130e-35
Identity = 69/137 (50.36%), Postives = 94/137 (68.61%), Query Frame = 1
Query:    1 MKTIPLSRVKDRASFEFVMKEVDLLKSLDHPNIVRLQEVYVTPSHLHVAMDLIEGGNLAARYKFEGEERAAVIIRQIVRALRYLHDRNIAHRDLKLENILLETKADKGNTPSVKLVDFGLSAIYEENGVSTDVLGSW 411
            +K + LSRVKD  S  F  +EV++++ LDHPNI RL  VY T  HL + MDL EGG+L   Y F+ E  AA I+ ++  A+RY+HDRNIAHRDLKL+NIL +   +  +   VKLVDFGLSA +++  +  DV+G+W
Sbjct:  112 LKAVELSRVKDEKSLNFFFREVEVMRQLDHPNICRLHAVYPTVEHLFMVMDLCEGGDLLTTYHFKSERNAANIVLRVTNAVRYMHDRNIAHRDLKLDNILTDETKEGAD---VKLVDFGLSAHFKDFQLEHDVVGTW 245          
BLAST of mRNA_S-dermatodea_contig9381.17420.1 vs. uniprot
Match: A0A6H5K413_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K413_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 6.430e-32
Identity = 69/154 (44.81%), Postives = 92/154 (59.74%), Query Frame = 1
Query:   10 IPLSRVKDRASFEFVMKEVDLLKSLDHPNIVRLQEVYVTPSHLHVAM--------------------DLIEGGNLAARYKFEGEERAAVIIRQIVRALRYLHDRNIAHRDLKLENILLETKADKGNTPSVKLVDFGLSAIYEENGVSTDVLGSW 411
            + LSRVKD  S  F  +EV++++ LDHPNI RL  VY T  HL + M                    DL EGG+L   Y F+ E  AA II ++  A+RY+HDRNIAHRDLKL+NIL +   +  +   VKLVDFGLSA +++  +  DV+G+W
Sbjct:   41 VELSRVKDEKSLNFFFREVEVMRQLDHPNICRLHAVYPTVEHLFMVMVLYPGVENSFCTSHEHRLLQDLCEGGDLLTTYHFKSERNAANIILKVTNAVRYMHDRNIAHRDLKLDNILTDETKEGAD---VKLVDFGLSAHFKDFQLEHDVVGTW 191          
BLAST of mRNA_S-dermatodea_contig9381.17420.1 vs. uniprot
Match: A0A835Z6S6_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S6_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.630e-29
Identity = 59/136 (43.38%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    1 MKTIPLSRVKDRASFEFVMKEVDLLKSLDHPNIVRLQEVYVTPSHLHVAMDLIEGGNLAARYKFEGEERAAVIIRQIVRALRYLHDRNIAHRDLKLENILLETKADKGNTPSVKLVDFGLSAIYEENGVSTDVLGS 408
            +KT+ +  +KD A F   M EV+++K LDHP++ RLQEVY +P ++ + MDL  GG+L  R +   E+ AA +++ IV  +RY H+ NIAHRDLKLENIL E     G    +K+VDFGL     +  +  D++G+
Sbjct:  108 LKTVEIKGLKDEAHFALFMNEVEIMKKLDHPSVARLQEVYHSPDYVFMVMDLYAGGDLVDRQRIRTEQDAAAVVKDIVDGIRYCHEHNIAHRDLKLENILYE---HSGPDAGIKIVDFGLGTTGTQAQMMRDIVGT 240          
BLAST of mRNA_S-dermatodea_contig9381.17420.1 vs. uniprot
Match: D7FK83_ECTSI (Calcium dependent protein kinase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK83_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 4.300e-25
Identity = 58/137 (42.34%), Postives = 80/137 (58.39%), Query Frame = 1
Query:    1 MKTIPLSRVKDRASFEFVMKEVDLLKSLDHPNIVRLQEVYVTPSHLHVAMDLIEGGNLAARYKFEGEERAAVIIRQIVRALRYLHDRNIAHRDLKLENILLETKADKGNTPSVKLVDFGLSAIYEENGVSTDVLGSW 411
            +KTI L  V+    +EF++ E++++K LDHPNI                          ARYKF  E+  A I+ +++ ALRY HDRNIAHRD+KLENI  E+ AD      VKLVDFGLSA +++  +  D++GSW
Sbjct:   75 LKTIELKDVETVEQYEFLLNEIEIMKQLDHPNI--------------------------ARYKFRSEDETAKIVNKLINALRYCHDRNIAHRDIKLENICFESMADDAE---VKLVDFGLSASFKDEQMRHDLVGSW 182          
BLAST of mRNA_S-dermatodea_contig9381.17420.1 vs. uniprot
Match: A0A835ZBQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ6_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.200e-24
Identity = 54/114 (47.37%), Postives = 72/114 (63.16%), Query Frame = 1
Query:   70 LLKSLDHPNIVRLQEVYVTPSHLHVAMDLIEGGNLAARYKFEGEERAAVIIRQIVRALRYLHDRNIAHRDLKLENILLETKADKGNTPSVKLVDFGLSAIYEENGVSTDVLGSW 411
            LL  LDHP++ RLQEVY +P ++ + MDL  GG+L  R +   E  AA ++R IV  +RY HD  IAHRDLKLENIL E    KG    +K+VDFGL     +  +  D++G+W
Sbjct:  246 LLPKLDHPSVARLQEVYHSPDYVFMVMDLYGGGDLVDRQRIRTEHDAAAVVRAIVDGIRYCHDHRIAHRDLKLENILYE---HKGADAGIKIVDFGLGVAGADASMMRDIVGTW 356          
BLAST of mRNA_S-dermatodea_contig9381.17420.1 vs. uniprot
Match: A0A812UBX6_SYMMI (Calmodulin n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812UBX6_SYMMI)

HSP 1 Score: 106 bits (264), Expect = 5.550e-24
Identity = 56/139 (40.29%), Postives = 90/139 (64.75%), Query Frame = 1
Query:    1 MKTIPLSRVKDRASFEFVMKEVDLLKSLDHPNIVRLQEVYVTPSHLHVAMDLIEGGNLAARYKFEG---EERAAVIIRQIVRALRYLHDRNIAHRDLKLENILLETKADKGNTPSVKLVDFGLSAIYEENGVSTDVLGS 408
            +K I L R+K++ +   + KE++++K++DHPNI+ L E++  P H+ + M+L  GG L  R +  G   EE+ A+ ++QI+RA+ YLH   IAHRDLK EN+LL +      T  +K+ DFGLS  ++ N + TD +G+
Sbjct:  434 VKYIALERMKEKLNV--LKKEIEIMKAVDHPNIIMLYEIFEDPKHVLLVMELCTGGTLLNRVRMYGRLCEEQTAIAMQQILRAVYYLHSNGIAHRDLKAENVLLSSDESIRKT-LLKVSDFGLSCYFKPNQIFTDKVGT 569          
BLAST of mRNA_S-dermatodea_contig9381.17420.1 vs. uniprot
Match: A0A1Q9ES50_SYMMI (Calmodulin n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9ES50_SYMMI)

HSP 1 Score: 106 bits (264), Expect = 5.740e-24
Identity = 56/139 (40.29%), Postives = 90/139 (64.75%), Query Frame = 1
Query:    1 MKTIPLSRVKDRASFEFVMKEVDLLKSLDHPNIVRLQEVYVTPSHLHVAMDLIEGGNLAARYKFEG---EERAAVIIRQIVRALRYLHDRNIAHRDLKLENILLETKADKGNTPSVKLVDFGLSAIYEENGVSTDVLGS 408
            +K I L R+K++ +   + KE++++K++DHPNI+ L E++  P H+ + M+L  GG L  R +  G   EE+ A+ ++QI+RA+ YLH   IAHRDLK EN+LL +      T  +K+ DFGLS  ++ N + TD +G+
Sbjct:   96 VKYIALERMKEKLNV--LKKEIEIMKAVDHPNIIMLYEIFEDPKHVLLVMELCTGGTLLNRVRMYGRLCEEQTAIAMQQILRAVYYLHSNGIAHRDLKAENVLLSSDESIRKT-LLKVSDFGLSCYFKPNQIFTDKVGT 231          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9381.17420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KC85_9PHAE1.370e-5971.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZF12_9STRA5.220e-4258.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KFV6_9PHAE8.640e-3951.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG93_ECTSI1.130e-3550.36Calcium-dependent protein kinase 2 (PfCDPK2) n=1 T... [more]
A0A6H5K413_9PHAE6.430e-3244.81Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835Z6S6_9STRA1.630e-2943.38Kinase-like domain-containing protein n=1 Tax=Trib... [more]
D7FK83_ECTSI4.300e-2542.34Calcium dependent protein kinase 4 n=1 Tax=Ectocar... [more]
A0A835ZBQ6_9STRA1.200e-2447.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812UBX6_SYMMI5.550e-2440.29Calmodulin n=2 Tax=Symbiodinium TaxID=2949 RepID=A... [more]
A0A1Q9ES50_SYMMI5.740e-2440.29Calmodulin n=2 Tax=Symbiodinium TaxID=2949 RepID=A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9381contigS-dermatodea_contig9381:3492..8258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue1.6e-30
Seed eggNOG ortholog2880.D8LG93
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
GOsGO:0000165,GO:0000187,GO:0001817,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006468,GO:0006690,GO:0006691,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009931,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010857,GO:0015630,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032675,GO:0032680,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0035556,GO:0035924,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044351,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046777,GO:0048010,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051019,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0098657,GO:0140096,GO:1900034,GO:1901564,GO:1901568,GO:1901700,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903555
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-26_002040.1
Exons3
Model size411
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9381.17420.1prot_S-dermatodea_contig9381.17420.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9381 3492..8258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925404.2348416-CDS-S-dermatodea_contig9381:3491..36021622925404.2348416-CDS-S-dermatodea_contig9381:3491..3602Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9381 3492..3602 +
1694079910.6484792-CDS-S-dermatodea_contig9381:3491..36021694079910.6484792-CDS-S-dermatodea_contig9381:3491..3602Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9381 3492..3602 +
1622925404.2564614-CDS-S-dermatodea_contig9381:7074..72331622925404.2564614-CDS-S-dermatodea_contig9381:7074..7233Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9381 7075..7233 +
1694079910.6627467-CDS-S-dermatodea_contig9381:7074..72331694079910.6627467-CDS-S-dermatodea_contig9381:7074..7233Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9381 7075..7233 +
1622925404.2660756-CDS-S-dermatodea_contig9381:8117..82581622925404.2660756-CDS-S-dermatodea_contig9381:8117..8258Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9381 8118..8258 +
1694079910.6727898-CDS-S-dermatodea_contig9381:8117..82581694079910.6727898-CDS-S-dermatodea_contig9381:8117..8258Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9381 8118..8258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9381.17420.1

>prot_S-dermatodea_contig9381.17420.1 ID=prot_S-dermatodea_contig9381.17420.1|Name=mRNA_S-dermatodea_contig9381.17420.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=137bp
MKTIPLSRVKDRASFEFVMKEVDLLKSLDHPNIVRLQEVYVTPSHLHVAM
DLIEGGNLAARYKFEGEERAAVIIRQIVRALRYLHDRNIAHRDLKLENIL
LETKADKGNTPSVKLVDFGLSAIYEENGVSTDVLGSW
back to top

mRNA from alignment at S-dermatodea_contig9381:3492..8258+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9381.17420.1 ID=mRNA_S-dermatodea_contig9381.17420.1|Name=mRNA_S-dermatodea_contig9381.17420.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4767bp|location=Sequence derived from alignment at S-dermatodea_contig9381:3492..8258+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGACGATTCCGCTCTCACGCGTCAAGGACAGGGCGAGCTTCGAGTT CGTCATGAAGGAGGTGGACCTCTTGAAGTCCCTCGATCATCCCAACATCG TGCGGCTTCAGGTACTATGTATGACACTACGGCACACGAAACACGTGCGC TCGCAGCGCTCAGTATTTTTTTGCGCCCAGTTTGTCGCAAATGCCGTGCC GCATCGTCGTTGCTTGCTTGTTTTTGGCCGCGTTTTCTTTTCGGATTTTT CCAGTGAAAATACACTTCTACTGCTGCTGCTGCTGCTGCTGCTGTAGGAT TGCTGTGATGCACACGGAGAGCATGCAACCGTTGGCAGAAGTCGTTCATT TTGTTTTTTTGCGCCGTCCTCCTGTTGTTTTGTTCGTTTTTGTGGTTTCT AGGCAGCGGGAATTGGAAGCGTCAACGTTCGGTCCGACGTGCGAATAAAT TTGCGTTTCTTTGCACACATAATTAGTCGTCAGGCGCGTGTGAACGTGCT CTTGGTTTCAACAACTGCAGTGTCCGCATGTGCACAATATACATGCGTTT TCACAAATACAGCAGTTTGCAGGATGAAGCACAGCCTGTAGCGTGGCGGG TTCTTGAGTGACTCATTGATTTTTGCTGGTCGTGCACACTTACCACCGGC CGGCCCAAAAATGGTTGACGATCCCACTCGTAATCGGATGAGACGTCGAG AGATGGAAAAAGCCTACGGAGTTATTTATGTATTAATATTACATATGCTA CTAAGGAGGAACTGACACAAACAAACTCTCGGAAACAGAGGGATATACCT TGGAATAGATACAATTATGATAGGTCGTTTTCCTCGCAGCGCTCCGTCAA CCATGGTGCCACCATGCTCTCGGCGCCTGAAACCACTTTTCCACCTCTCT CTCGAGCGCTGTGGGGCCTCCATTTCCGGACCCCGATGCGCCATCTTAGC ATTGGTCCGTGCGACCTGCGCGCCGATCTCATTCGTTGATGATTTATTTG TTCCCTTCCCGCCTTTGTTTGCGTTCCAGTTTCATGACTACATAAATACT CGTGTTCGCCGGTCCCATCTCGCAAAAACCTTTCGACACTACTTGATCTA CCACCCATCATTGCTTCCCTGCAGTTCTATACCTTCATTATTTTCTACTG CTGACTGTACTATTACGGAGGTACACACTATAATCAAGTAATCAGGACCA AATATCATAACCATGAATACCCAACGATCCGACCATGAGTACCCAAACAA ACAAAAAATATCATGAAAAACGAAAAGACACGAGATATGGCCATACACAA GAACACCGACCTTGAAATCTCGATAATTCCAGCCTATTTTGATTTTCCTA GGTTGAGACCTTGTGGCTAATTTGGACCTGTTGACTATGGCCCCCCCGTA ACAGTTCATTACGTTCCAGTTTCATGACCTTTACAGGTCGTGTTGGTCGG TCCCATCTCGCGATAACCTTTCGACAGTACTACCATCCATCGTTGTTACC CTGCAGTTCTACTACTTGTTTCATTTTCATTGTCTATGTAAACCTTTCCG CCACTCTAACACTATTTACGTTTTGCTACTTACGTTTTTTGCTGGAGTTT CTAAGTCACGTCGTCCTTTCGCGCTTGGCGCCTGATAAACACTTTTTAAC CCCTCACTCGAACGCCCCTCTCGAGCGCTGTGGGACCTCCATTTCCCGTC CTCGACGAGCCCATGTTTCGTTGTGACCCTTACCTTTCACTATTCTAGTT ACTGAAAACTACTTTTGTTTTTACATATTGACACTATTTTATCTATTCTA TATGGTTCGACATTTTTGTTTATGTCGCTGGAGTTTCATGTAGTACGTCG CGTGTGGGTCGTGCAACCAGTGAACCCTTCGACACTACTGTCATTTTTGT TCCCGTGCATTTCTACGCTCACTACGTAGCATATGTTCTATAATTGTGTT ATGGTAAGTCCTCTGTCGTAGTAGTTCAGTGTAAGCTTCGGCTACCTCGG GCCCCACGCCCTCGGAAGGGGCGAGCTAATATACGACATTATAAGTAGTC TCCCTGGGAACATTTTTTATGGTCTCGTAGTAATGGTCCCATTTGTAGTC ATGGTCGCAATTCTCTGTCGTTTTGTATTGGTCGCTGTGAGCACTTCACT TCGCTTCACGTCTGTGTGTTGCCGCAACTTCCGGGTTTTTTTTCACTCAG TCTCGGTGTTTGTCTTCGCCCGACGTCCGGTCGGCCTTTTTTTGGAATAG ATGTTGTCCTGCTGGGATGTTTCGTTCATTATTTTGTTAACGACTAAACC CAAGGCGATAAAAGTACGTAAGGGTTTATGGCCATCCTGATCTACCGCAA TCATCTTCACGACGTTCCACCGCCCAGTATTGAAACCATGCCTATCGTTT GGCGTCTTACATCGTTGGCCTTGGCGATGGCGCTCGATGAGCGTTGCGGT GTCATCCGCGGAGACCTTGTACTACATAATATTGCAGCAACGGACAGACG GGAGTGATACATCAGAGACCACCGTGCAAGGAAGCACTCCTCGGCTCTAT CGCTCGCCACCGCGTGCGGACGCGTAGCAGGCGTTGTGCTGTAGGGCACG GTAAACGCCTTGTTGTTTGGTCGCAAGGTGCAATCACCGGCGGAGTTACC ATAACCTCGCTTCCAACCCTGCTACCCGCTGCTCTTGCGCTTGAGGGATA ACTCTGTAATCTTACTGTAGGGCTCTTGAGGATACGATAGTCCAGAGAGT GCAAGACCCTAGGCAGCTAGATAATATTTTCAGTGAGTAGCGAGGAGCAC TATAATGGCAATATATTACCACTATAGTACAACTACGATACCACTATAAT AACACTATAAAACCAAATAAAAATAAAATAAAATAAAACACTACAATACC ACTATAAAACCACTATGAAACCACTATAATACCGCCCTAATAGCACTATA ATTGCTCACGTGTACCTGCACTGTTTGTTGTCGCGCGTTATGGTACCACG GAGGTACGCAGCACTGCAGTATATCATTTATTAATACCGCTTTAGACATT TTTTAATAGCGATTTAGAGTCACCATGCCCACACTACTTCCCATGAGATT TTAGGCCGATTTTGTACACTATAAACTCCTATACGATTTTGAGCCAAATG TTGAAACTAGTAGGATTTTTCACCTTACGAGTGTAGGCGTGGCTACCTAC TACAATAGTTGGTACAGTAGTATAATTGTAATCAGGACCAAATTTGCCAA AAGAATATGCCCAACAAAATAAAGCAGCAATCAATATGGTCCGGCCTCAC AACATCTGCGATCTTCCGACCTGAAATGTCAAATCAAAAACATTTTTTCT TCTTCCGTACTAAATTGGCCATTGTTTTTTAAATTTATCGATTTCTCATG TGACCGCGAGCGGGATCGGCTTCCATTGGCGGGGCCGTTCCCTTGTCACT AGAGCTGTGATAAAATCCTTTTTGAATATACAACGGCAGCAACATCGACA ATCATGTTTCCTTTCGCCTGAAGAAGTTGCATACGGACACGCGCCCTTCG CTCTCGCCCTGACCCGTTGCGGCGGAAGGACAGGAGGTGTACGTAACCCC CTCACACCTGCACGTTGCGATGGACCTCATCGAGGGGGGCAACCTGGCCG CGCGCTACAAGTTCGAGGGGGAGGAGAGGGCCGCCGTCATTATCAGGCAG ATCGTGCGGGCGCTACGGTACCTCCACGACAGGAACATCGCGGCAAGTCG AGAATTGTACAGTTAGCACGTGTACTTCGAAGTATGCAGTTTAATCCCAT TGATCGGAAGCACTTGAACGCAACGCAACGCGTGTGTGCTGCGTTTTATT GCTCTTGTTTCGTAGTGCTTGTGACGTTTTGCTCTGCACGTACATGCTGT GCGCTAAAAATGTGATTCGCATTCGAGTATCATACTGGTACTGTATACAG CAGTTACGCGTTGAGCAATAACAGTATCTGGTAACTCAAAATTGAGAGTT GGTAGGCCTGGACTTATCCTGAAAAAGCTGCCTTTTTGGCGAGTGGGTTC GGCGGGAAGGCTGATTTGCACCTACCGGTGCCGACAGCGGCTTGGGCGAT GAGCCCGGGCGTGGGCGATGAAGACCTTGTGTGTGCTCCTTTCTCATGTG CGTGGGAGTCTTCAAGTGGAGGTGGCGTGTGTGTCATTTGCACTCCCGAG GGGGGTACAGTAATACATTTCCGCGGTGGGGGCAATCGCCAAGATTGTTC CCAATCAGGCCGTCGGGGGCGTTGCTCTGCTCCTGGTTTTGCTGCAGTGT GGGTGACTCTTGCACTCCGCCTCAGCATACATAGCTTTCCACATTATGTT GACTCAACATTTTGGTCGAAAGAATCGCGTTTTGGTCCTTCGGTCGGTCC TGTCTGCCCTACTGCAATAGCCTGTCAACACCGGGCACGCATACATCAAC CGTCAAAGCCGTGCACGCACAATGATATCCACGCGTTGCCTTCCGAGCGC ATGCGACACGACAGCAGCGGTGTGACAGAAAGCGAGGCGACCCGTTTTTT TTAGACGCATCGGAGCGTCCACCCAAAAACACTTACCTTACGCCCCCGCC CCCCCTCGCCTGCCTCTCCCTACCAGCACCGCGACCTGAAGCTGGAGAAC ATACTCCTCGAGACCAAAGCGGACAAGGGTAACACCCCCTCGGTGAAGCT CGTGGACTTCGGGCTCAGCGCCATTTACGAAGAAAATGGCGTGTCCACCG ACGTCTTGGGGAGTTGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9381:3492..8258+

>mRNA_S-dermatodea_contig9381.17420.1 ID=mRNA_S-dermatodea_contig9381.17420.1|Name=mRNA_S-dermatodea_contig9381.17420.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at S-dermatodea_contig9381:3492..8258+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGACGATTCCGCTCTCACGCGTCAAGGACAGGGCGAGCTTCGAGTT
CGTCATGAAGGAGGTGGACCTCTTGAAGTCCCTCGATCATCCCAACATCG
TGCGGCTTCAGATGAAGACGATTCCGCTCTCACGCGTCAAGGACAGGGCG
AGCTTCGAGTTCGTCATGAAGGAGGTGGACCTCTTGAAGTCCCTCGATCA
TCCCAACATCGTGCGGCTTCAGGAGGTGTACGTAACCCCCTCACACCTGC
ACGTTGCGATGGACCTCATCGAGGGGGGCAACCTGGCCGCGCGCTACAAG
TTCGAGGGGGAGGAGAGGGCCGCCGTCATTATCAGGCAGATCGTGCGGGC
GCTACGGTACCTCCACGACAGGAACATCGCGGAGGTGTACGTAACCCCCT
CACACCTGCACGTTGCGATGGACCTCATCGAGGGGGGCAACCTGGCCGCG
CGCTACAAGTTCGAGGGGGAGGAGAGGGCCGCCGTCATTATCAGGCAGAT
CGTGCGGGCGCTACGGTACCTCCACGACAGGAACATCGCGCACCGCGACC
TGAAGCTGGAGAACATACTCCTCGAGACCAAAGCGGACAAGGGTAACACC
CCCTCGGTGAAGCTCGTGGACTTCGGGCTCAGCGCCATTTACGAAGAAAA
TGGCGTGTCCACCGACGTCTTGGGGAGTTGGCACCGCGACCTGAAGCTGG
AGAACATACTCCTCGAGACCAAAGCGGACAAGGGTAACACCCCCTCGGTG
AAGCTCGTGGACTTCGGGCTCAGCGCCATTTACGAAGAAAATGGCGTGTC
CACCGACGTCTTGGGGAGTTGG
back to top