mRNA_S-dermatodea_contig938.17418.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig938.17418.1
Unique NamemRNA_S-dermatodea_contig938.17418.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig938.17418.1 vs. uniprot
Match: D8LE78_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE78_ECTSI)

HSP 1 Score: 650 bits (1676), Expect = 1.440e-220
Identity = 446/824 (54.13%), Postives = 531/824 (64.44%), Query Frame = 1
Query:    1 IKPAEGLLTTANGRLIVKPT--------VSGRTDDTSSLGGQRGGEDDSS------IRVCAAWPLAFIWVDPERDLQKSPPREMGIDEIMDVARGHKTPAFWQQAAHRGIHTLPTPELCFSLMGHDRTLDLAAESLSDAKRWVRALVGLALRNKRGEL--NTGDAFAVSMSPRSRLESTTTSATVPQRFETLGANNKSIDPHRWEETAGTEAISPRLPR-------RHSAAAKE----STEEPHAYRDPPTGENAGEWSVNTMRAWRRRLFPAVSRGDTVAVLALFDQGCPVDLVQTGSGDTTLLLACRLGDIDLVAECLRRGSRNDPHPDFGQTALQAAVASGQEECAVILLETAAPSGSDAVVANHKDPNRETPLHVASRRGYSGIVEALLYHGANLRLVDRDGNXXXXXXXXXXXXXXXXXXXXXXGDAVLEERNARGDRVLHPAAASGHIACVQLLLETAAEPDTPNADGKTPFNLASTGGHLAVTRLIRQYAPAAGTASGGDAKIRADGPRDSGGG-ATADALPRPHASGSSANCPAGTTEHRSRDLEQRCYSAASLGRHSLEIFGSP-STRLTAQSFGDNSFEESPRRSSRHHEEDDSGV---SPSISRSQGQPP--TV--DTASPAGDGCDSSSAVPGAPVHGSLFDGLQVYVVGGRQPLGSQHDIASAGGMLS------------------STASNAGPTTEYESCLSHQQQQQERLHHSRAPLSSSYSTAAVSSTA--W-GSFLSSPSTMAPSPPCGNPAASPIADSSANVNSDGRCASMAYSTTDGRQISNPLSGGLCAVPGSARALARMIHFS 2301
            +KPAEGLLTTA+GRL+V+PT        V GR  D  +   + GG D  +      +R+ AAWPL FIWVDPERDL++ PPRE+ ++EI+D+ARGHKTPAFWQQA+HRGIHTLP P+LCFSL+GHDR+LDLAAESL +A+ WV AL  +AL  KRG L    GDA A  +  R   E   + A         G     +D H  +   G +  S R          RH  + +     S+E P  +     GE  G WSV+T+ AWRRRLFPAV RGD  AVLA+FDQGCPVD+ QTG+GDT +LLACRLGD+ +V ECLRRGSRNDPHP FGQTALQAAVASGQE CA ++LETAAPS SDAVV+NHKDPN+ETPLHVA RRGY GIVEALL+HGA+LR VDR GNXXXXXXXXXXXXXXXXXXXXXX   VLEERNARGDR LH AAA GHIACV+LLL TAAEPD PNADG+TPF LAS GGHLAVTRLIR+YAPAAGT SGGDA+ +A    + GGG ATADALPRPH+SGS++N    T +HRSRDLE RCYSAA LG    E    P S R    + G +S +    RS+   E+D  G+      +  ++  PP  TV  D  SPA     SS++ P    HGSLFDGLQVYVVGGRQPLGSQH  A+ G + +                  STAS+                Q     +     +SS STA+       W  + LS+PST+APSPP   P   P  D   + +S    +++  + T        + G    VPGSARALARMIHF+
Sbjct:    1 MKPAEGLLTTASGRLVVRPTAGGGGGSGVCGREADRGNESSRAGGGDKGAAPSIPMMRLHAAWPLTFIWVDPERDLKRFPPREIVVEEIVDLARGHKTPAFWQQASHRGIHTLPDPKLCFSLVGHDRSLDLAAESLPEAREWVCALARVALMAKRGGLVEAAGDAVAPLLPHRFWPEPAASPAGPDLEENMSGERLIDVD-HEVDSRVGGQRQSDRAATALNTEVSRHEVSLRSDADLSSEIPKVF-----GEG-GAWSVDTIHAWRRRLFPAVRRGDIAAVLAIFDQGCPVDIAQTGTGDTPMLLACRLGDVGMVRECLRRGSRNDPHPAFGQTALQAAVASGQEACARLILETAAPSRSDAVVSNHKDPNKETPLHVACRRGYDGIVEALLHHGADLRAVDRKGNXXXXXXXXXXXXXXXXXXXXXXXXVVLEERNARGDRALHTAAAPGHIACVELLLGTAAEPDVPNADGQTPFALASRGGHLAVTRLIRKYAPAAGTPSGGDAQFQAHRRANEGGGSATADALPRPHSSGSASNP---TPDHRSRDLEHRCYSAAGLGHQQFEDLNDPTSCRQPVYTSGADSSDRDLLRST--SEQDRRGLYARGGELHNTKATPPQSTVEEDVISPA-----SSASAPVQGRHGSLFDGLQVYVVGGRQPLGSQHSCAAPGNVSALARVPVSARTMVLDSHRLSTASHXXXXXXXXXXXX----QNYYPSNQHTSYNSSLSTASFEGLDPNWRDNVLSAPSTVAPSPP--TPVLPPEDDRRPSCDSTPLLSAVPSTATTNIGDGTSVVG----VPGSARALARMIHFN 797          
BLAST of mRNA_S-dermatodea_contig938.17418.1 vs. uniprot
Match: A0A6H5L0C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C2_9PHAE)

HSP 1 Score: 653 bits (1684), Expect = 3.350e-217
Identity = 446/843 (52.91%), Postives = 538/843 (63.82%), Query Frame = 1
Query:    1 IKPAEGLLTTANGRLIVKPTVSG--------RTDDTSSLGGQRGGEDDSSI------RVCAAWPLAFIWVDPERDLQKSPPREMGIDEIMDVARGHKTPAFWQQAAHRGIHTLPTPELCFSLMGHDRTLDLAAESLSDAKRWVRALVGLALRNKRGEL--NTGDAFAVSMSPRSRLESTTTSATVPQRFETLGANNKSIDPHRWEETAGTEAISPRLPR-------RHSAAAKE----STEEPHAYRDPPTGENAGEWSVNTMRAWRRRLFPAVSRGDTVAVLALFDQGCPVDLVQTGSGDTTLLLACRLGDIDLVAECLRRGSRNDPHPDFGQTALQAAVASGQEECAVILLETAAPSGSDAVVANHKDPNRETPLHVASRRGYSGIVEALLYHGANLRLVDRDGNXXXXXXXXXXXXXXXXXXXXXXGDAVLEERNARGDRVLHPAAASGHIACVQLLLETAAEPDTPNADGKTPFNLASTGGHLAVTRLIRQYAPAAGTASGGDAKIRADGPRDSGG-GATADALPRPHASGSSANCPAGTTEHRSRDLEQRCYSAASLGRHSLEIFGSPST-RLTAQSFGDNSFEESPRRSSRHHEEDDSGVSPSISRSQG-----QPP--------------TVDTASPAGDGCDS-------SSAVPGAPVHGSLFDGLQVYVVGGRQPLGSQHDIASAGGMLSSTASNAGPTTEYESCL-SHQQQQQERLH----------------HSRAPLSSSYSTAAVSSTA--W-GSFLSSPSTMAPSPPCGNPAASPIADSSANVNSDGRCASM-AYSTTDGRQISNPLSGGLCAVPGSARALARMIHFS 2301
            +KPAEGLLTTA+G L+V+PTV G        R  D  +   + GG D  +       R+ AAWPL FIWVDPERDL++SPPRE+ ++EIMD+ARGHKTPAFWQQA+HRGIHTLP P+LCFSL+GHDR+LDLAAESL +A+ WV AL  +AL  KRG      GDA A  +  R R E   + A  P   E++ A   +   H+ +   G +  S R          RH  + +     S+E+P        GE  G WSV+T+ AWRRRLFPAV RGD  AVLA+FDQGCPVD+ QTG+GDT +L+ACRLGD+ +V ECLRRGSRNDPHP FGQTAL AAVASGQE CA ++LETAAPS SDAVV+NHKDPN+ETPLHVA RRGY GIVEALL+HGA+LR VDR GNXXXXXXXXXXXXXXXXXXXXXXGD VLEE NARGDR LH AAA GHIACV+LLL TAAEPD PNADG+TPF LAS GGHLAVTRLIR+YAPAAGT SGGDA+ +A    + GG   T+D LPRPH+SGS+ N P GT +HRSRDLE RCYSAA LG    E   +P+  R    + G +SF+    RS+  H+           RS+G     Q P               +  A+P     D        S++ P    HGSLFDGLQVYVVGGRQPLGSQH  A+ G M +S A    P +     L SH+                        + ++  +SS STA+       W  + LS+PST+APSPP   P ++P  D   N +S    +++ + +TT G         G+  V GSARALARMIHF+
Sbjct:  103 VKPAEGLLTTASGHLVVRPTVGGGGGSGVCERGADRGNESSRAGGGDKIAAPSMPMRRLRAAWPLTFIWVDPERDLKRSPPREILVEEIMDLARGHKTPAFWQQASHRGIHTLPDPKLCFSLVGHDRSLDLAAESLPEAREWVCALARVALMAKRGGSVKTAGDAVAPLLPHRFRPEPAASLAG-PDLEESVSAERLNDIDHKVDSHVGVQRQSDRAATALNTEVSRHELSLRSDADLSSEKPKVL-----GEG-GTWSVDTIHAWRRRLFPAVKRGDIAAVLAIFDQGCPVDIAQTGTGDTPMLVACRLGDVGMVRECLRRGSRNDPHPAFGQTALHAAVASGQEACARLILETAAPSRSDAVVSNHKDPNKETPLHVACRRGYDGIVEALLHHGADLRAVDRKGNXXXXXXXXXXXXXXXXXXXXXXGDVVLEESNARGDRALHTAAAPGHIACVELLLGTAAEPDVPNADGQTPFALASRGGHLAVTRLIRKYAPAAGTPSGGDAQFQAHRRANEGGRSVTSDTLPRPHSSGSAPN-PPGTPDHRSRDLEHRCYSAAGLGHQQFEDLNAPTCCRQPVYTSGGDSFDRDLLRSTSQHDRRQDLHIIDACRSKGVVFFCQIPHLYSIGLYASGGELKITKATPPQSTFDGHVTSPAFSTSAPVQGTHGSLFDGLQVYVVGGRQPLGSQHSCAAPGKMSASLA--RVPVSARTMVLDSHRLSTASHXXXXXXXXXXXXXXXXPSNQQSSYNSSLSTASFEGLDPNWRDNILSAPSTVAPSPP--TPISTPEGDRRPNRDSTSLLSAVPSTATTTGGD-----GTGIVGVMGSARALARMIHFN 928          
BLAST of mRNA_S-dermatodea_contig938.17418.1 vs. uniprot
Match: A0A836CAX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAX5_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.010e-55
Identity = 172/486 (35.39%), Postives = 217/486 (44.65%), Query Frame = 1
Query:  142 AWPLAFIWVDPERDLQKSPPREMGIDEIMDVARGHKTPAFWQQAA-HRGIHTLPTPELCFSLMGHDRTLDLAAESLSDAKRWVRALVGLALRNKRGELNTGDAFAVSMSPRSRLESTTTSATVPQRFETLGANNKSIDPHRWEETAGTEAISPRLPRRHSAAAKESTEEPHAYRDPPTGENAGEWSVNTMRAWRRRLFPAVSRGDTVAVLALFDQGCPVDLVQTGSGDTTLLLACRLGDID-------------LVAECLRR---------------------------------------------GSRNDPHPDFGQTALQAAVASGQEECAVILLETAAPSGSDAVVANHKDPNRETPLHVASRRGYSGIVEALLYHGANLRLVDRDGNXXXXXXXXXXXXXXXXXXXXXXG--DAVLEERNARGDRVLHPAAASGHIACVQLLLETAAEPDTPNADGKTPFNLASTGGHLAVTRLIRQYAPA 1416
            A PL  +W DP++ ++++PPRE+ + ++  V  GHKT AFWQ  A   G   LP   LC SL+  DRTLD+AA + +DA+ W  A   +  R++ GEL                E T      P +                                                                  WR+RLF AV  GD  AV A FD GC VDL + GS DT LL ACRLG+++             L + C RR                                             G++NDPHP FGQTALQAAVA+G  +CA ++LETAAPS +DAVVANH+DPNRETPLHVA+RRG +     LL HGA+    D  G XXXXXXXXXXXXXX        G  D +LE  +AR                       AA  D  +  G+TP+ LA   GH A+ RLI++YAPA
Sbjct:  455 ALPLTLVWFDPDKSVRRAPPRELLLGDVRSVTAGHKTAAFWQHIALGAGTAGLPPAALCLSLIAADRTLDVAAATPADARAWRDAFADVVRRHRAGELGGXXXXXXXXXXXXXAELT------PDQ------------------------------------------------------------------WRQRLFLAVHAGDATAVSAAFDAGCAVDLAEAGSMDTALLSACRLGNVEERRRASILSVAAHLTSTCARRAPRHAPVRTHPNRAAPXXXXXXXXXXXXXXXTLLPRQVARVALARGAKNDPHPQFGQTALQAAVANGHLDCARLILETAAPSAADAVVANHEDPNRETPLHVAARRGDAAAAALLLRHGADPFGRDGGGGXXXXXXXXXXXXXXVATLLDATGAHDELLEAADARXXXXXXXXXXXXXXXXXXXXXXXAAAADAADGAGRTPYALAYGHGHHALARLIQEYAPA 868          
BLAST of mRNA_S-dermatodea_contig938.17418.1 vs. uniprot
Match: A0A7S4V705_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V705_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.460e-49
Identity = 145/460 (31.52%), Postives = 217/460 (47.17%), Query Frame = 1
Query:  202 REMGIDEIMDVARGHKTPAFWQQAAHRGIHTLPTPELCFSLMGHDRTLDLAAESLSDAKRWVRALVGLALRNKRGELNTGDAFAVSMSPRSRLESTTTSATVPQRFETLGANNKSIDPHRWEETAGTEAISPRLPRRHSAAAKESTEEPHAYRDPPTGENAGEWSVNTMRAW-----RRRLFPAVSRGDTVAVLALFDQGCPVDLVQTGSGDTTLLLACRLGDIDLVAECLRRGSRNDPHPDFGQTALQAAVASGQEECAVILLETAAPSGSDAVVANHKDPNRETPLHVASRRGYSGIVEALLYHGANLRLVDRDG-NXXXXXXXXXXXXXXXXXXXXXXGDAVLEERNARGDRVLHPAAASGHIACVQLLLETAAEPDTPNADGKTPFNLASTGGHLAVTRLIRQYAPAAG--TASGGDAKIRADGP------RDSGGGATADALPRPHASGSSANCP 1539
            R + + ++  +  GH T AF    A  G+ ++   + CFSL+G DRT D  AE+  D +    AL G+  +  R  + T                        Q+ +  GA N++                     ++  ++K ST     +   P+  ++G   ++  + W     ++ LF AV  GD        D GCPVD ++ G+ DT LL ACR G  ++V+  L RG++NDPHP FGQTALQ AV++G   C  ++LETAAPSGSDA++ NH+DPN E P+HVASR G   ++E L+ HGAN+ LVD  G                        GDA++E++                + C Q+LLETAA+      +G TP+ +A       + +++  Y   A   TAS  D+  ++ G        D+   ++A  LPRPH  GSS  CP
Sbjct:  327 RNIALADVKSIQVGHGTAAFQAYLARNGVKSISEKKYCFSLLGCDRTFDFFAETTCDVEVCTNALRGIIRQLHRSVILT------------------------QQKDDGGAPNQN--------------------EKYLCSSKSST-----FSAAPSFLHSGP-HLSAFQQWNSDVHKKSLFEAVKAGDVEKFSWHLDNGCPVDFLEDGTADTPLLAACRFGQGEIVSLALARGAKNDPHPSFGQTALQTAVSAGHVNCVQMILETAAPSGSDAIIVNHEDPNGEAPIHVASRCGCLSVLELLVTHGANVSLVDHRGWTALHCAAGGGHDECLGYLLGAAGGDALVEQQXXXXXXXXXXXXXXXRLKCAQVLLETAADASATTLEGMTPYQIAKKQKLREMAKILLGYDTMASSSTASSEDSVHQSRGSLHFDFINDTTAKSSA-LLPRPHG-GSSTRCP 734          
BLAST of mRNA_S-dermatodea_contig938.17418.1 vs. uniprot
Match: A0A662XT93_9STRA (PH domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XT93_9STRA)

HSP 1 Score: 194 bits (494), Expect = 6.390e-48
Identity = 155/429 (36.13%), Postives = 214/429 (49.88%), Query Frame = 1
Query:  127 IRVCAAWPLAFIWVDPE--RDLQKSPPREMGIDEIMDVARGHKTPAFWQQAAHRGIHTLPTPELCFSLMGHDRTLDLAAESLSDAKRWVRALVGLALRNKRGELNTGDAFAVSMSPRSRLESTTTSATVPQRFETLGANNKSIDPHRWEETAGTEAISPRLPRRHSAAAKESTEEPHAYRDPPTGENAGEWSVNTMRAWRRRLFPAVSRGDTVAVLALFDQGCPVDLVQTGSGDTTLLLACRLGDIDLVAECLRRGSRNDPHPDFGQTALQAAVASGQEECAVILLETAAPSGSDAVVANHKDPNRETPLHVASRRGYSGIVEALLYHGANLRLVDRDGNXXXXXXXXXXXXXXXXXXXXXXGDAVLEERNARGDRVLHPAAASGHIACVQLLLETAAEPDTPNADGKTPFNLASTGGHLAVTRLIRQY 1407
            +R      L   W DP      +K   R + +  + +V  GH T AF   +A      +   E CFSL+   RTLDL A S  +A  WV +L  L              FA + S  + L+S    A + + F+     ++  DP    +     A+                                  S   + AWR R+F     G    ++  +  GCP+DL+++GSGDT L+LACR G+  LV  CL R ++NDPHP+FG+TALQ AV + Q  C  +LL TAA S  D+ + NH DPN + PLHVA+  G    ++ LL+HGA++ +V+  G  XXXXXXXXXXXXXXXXXXXX GD+VL   +  GD  LH AA SG+ A  +LLLE+AA     N   +TP+++A          LI +Y
Sbjct:  531 VRAVEPPHLQLTWGDPSVSGSAEKRGVRSLDLALVTEVREGHGTKAF---SAQTDSSVIKEKEKCFSLITKTRTLDLVAASKEEAHIWVSSLRDLL-------------FAPATSADALLDS----ARIIEGFKQSALTSR--DPGATSDDKPVAAVP---------------------------------SKRMVAAWRSRIFNLARNGRLDEIVECWQDGCPIDLLESGSGDTLLILACRQGNDQLVELCLSRRAKNDPHPEFGETALQVAVNACQPHCVKLLLSTAAKSDMDSEIVNHIDPNNDAPLHVAASHGDLACLQLLLHHGADICVVEEFGRTXXXXXXXXXXXXXXXXXXXXGGDSVLNSGDHEGDTALHYAALSGNEATAKLLLESAANVFATNIHSETPYDIAVREKQQKCAELIAKY 904          
BLAST of mRNA_S-dermatodea_contig938.17418.1 vs. uniprot
Match: A0A662WTT4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTT4_9STRA)

HSP 1 Score: 192 bits (488), Expect = 3.590e-47
Identity = 156/429 (36.36%), Postives = 212/429 (49.42%), Query Frame = 1
Query:  127 IRVCAAWPLAFIWVDP--ERDLQKSPPREMGIDEIMDVARGHKTPAFWQQAAHRGIHTLPTPELCFSLMGHDRTLDLAAESLSDAKRWVRALVGLALRNKRGELNTGDAFAVSMSPRSRLESTTTSATVPQRFETLGANNKSIDPHRWEETAGTEAISPRLPRRHSAAAKESTEEPHAYRDPPTGENAGEWSVNTMRAWRRRLFPAVSRGDTVAVLALFDQGCPVDLVQTGSGDTTLLLACRLGDIDLVAECLRRGSRNDPHPDFGQTALQAAVASGQEECAVILLETAAPSGSDAVVANHKDPNRETPLHVASRRGYSGIVEALLYHGANLRLVDRDGNXXXXXXXXXXXXXXXXXXXXXXGDAVLEERNARGDRVLHPAAASGHIACVQLLLETAAEPDTPNADGKTPFNLASTGGHLAVTRLIRQY 1407
            +R      L   W DP      +K   R + +  + +V +GH T AF   +A      +   + CFSL+   RTLDL A S  +A  WV +L  L              FA + S  + L+S  T     Q   T      S DP    +     A+                                  S   + AWR R+F     G    ++  +  GCP+DL+++GSGDT L+LACR G+  LV  CL R ++NDPHP+FG+TALQ AV + Q  C  +LL TAA S  D+ + NH DPN + PLHVA+  G    ++ LL+HGA++ +V+  G  XXXXXXXXXXXXXXXXXXXX GD+VL   +  GD  LH AA SG+ A  +LLLE+AA     N   +TP+++A          LI +Y
Sbjct:  513 VRAVEPPHLQLTWGDPTVSGSTEKRGVRSLDLSLVTEVRKGHGTKAF---SAQTDSSVVREKDKCFSLITKTRTLDLVAASKEEAHIWVTSLRDLL-------------FAPATSADALLDSARTIEGFKQSALT------SRDPDVISDDKPVAAVP---------------------------------SKRMVAAWRSRIFNLARNGRLDEIVECWQDGCPIDLLESGSGDTLLILACRQGNDQLVELCLSRRAKNDPHPEFGETALQVAVNACQPHCVKLLLSTAAKSEMDSEIVNHIDPNNDAPLHVAASHGDLACLQLLLHHGADICVVEEFGRTXXXXXXXXXXXXXXXXXXXXGGDSVLNSGDHDGDTALHYAALSGNEATAKLLLESAANVFATNIHNETPYDIAVREKQQRCAELIAKY 886          
BLAST of mRNA_S-dermatodea_contig938.17418.1 vs. uniprot
Match: A0A6G0M401_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0M401_9STRA)

HSP 1 Score: 188 bits (478), Expect = 6.650e-46
Identity = 151/413 (36.56%), Postives = 212/413 (51.33%), Query Frame = 1
Query:  130 RVCAAWPLAFIWVDP--ERDLQKSPPREMGIDEIMDVARGHKTPAFWQQAAHRGIHTLPTPELCFSLMGHDRTLDLAAESLSDAKRWVRALVGLALRNKRGELNTGDAFAVSMSPRSRLESTTTSATVPQRFETLGANNKSIDPHRWEETAGTEAISPRLPRRHSAAAKESTEEPHAYRDPPTGENAGEWSVNTMRAWRRRLFPAVSRGDTVAVLALFDQGCPVDLVQTGSGDTTLLLACRLGDIDLVAECLRRGSRNDPHPDFGQTALQAAVASGQEECAVILLETAAPSGSDAVVANHKDPNRETPLHVASRRGYSGIVEALLYHGANLRLVDRDGNXXXXXXXXXXXXXXXXXXXXXXGDAVLEERNARGDRVLHPAAASGHIACVQLLLETAAEPDTPNADGKTPFNLA 1362
            RV     L   W DP      ++   R + +  ++++  GH+T AF  Q      + +   + CFSL+   RTLDL A S  +A+ WV +L  L                                     F +    + S+   R  E     A+SPR    +S+        P A   PPT           +  WR R+F          ++   + GCP+DL+++G+ DT L+LACRLG+ +LV  CL R ++NDPHP+FG+TALQ AV S    C  +LL TAA S  D+ + NH DPN + PLHVA+R G    ++ LL+HGA++ +V+  G  XXXXXXXXXXXXXXXXXXXXXGD+VL   +  GD  LH A+ SG+ A V+LLLE+AA     N   +T +++A
Sbjct:  496 RVTNPSHLQITWGDPTLSGSAERKKARSLDLALVIEIREGHRTEAFTAQTES---NIVKEKDKCFSLVTRGRTLDLVAASKEEARIWVSSLRELL------------------------------------FASEPPTDASLMSARTIEDFKQSALSPREQDGNSSG------NPSAV-VPPT--------KRMIAVWRNRIFNLARHDRLDDIMECLEDGCPIDLLESGTDDTLLMLACRLGNAELVELCLSRRAKNDPHPEFGETALQVAVNSSHAHCVGLLLSTAAKSDMDSEIVNHIDPNNDAPLHVAARHGDLACLQLLLHHGADICVVEEFGRTXXXXXXXXXXXXXXXXXXXXXGDSVLNSGDHDGDTALHYASLSGNEAIVRLLLESAANVFATNIHKETSYDIA 854          
BLAST of mRNA_S-dermatodea_contig938.17418.1 vs. uniprot
Match: A0A0P1AB56_PLAHL (Ankyrin n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB56_PLAHL)

HSP 1 Score: 188 bits (477), Expect = 1.010e-45
Identity = 147/402 (36.57%), Postives = 204/402 (50.75%), Query Frame = 1
Query:  202 REMGIDEIMDVARGHKTPAFWQQAAHRGIHTLPTPELCFSLMGHDRTLDLAAESLSDAKRWVRALVGLALRNKRGELNTGDAFAVSMSPRSRLESTTTSATVPQRFETLGANNKSIDPHRWEETAGTEAISPRLPRRHSAAAKESTEEPHAYRDPPTGENAGEWSVNTMRAWRRRLFPAVSRGDTVAVLALFDQGCPVDLVQTGSGDTTLLLACRLGDIDLVAECLRRGSRNDPHPDFGQTALQAAVASGQEECAVILLETAAPSGSDAVVANHKDPNRETPLHVASRRGYSGIVEALLYHGANLRLVDRDGNXXXXXXXXXXXXXXXXXXXXXXGDAVLEERNARGDRVLHPAAASGHIACVQLLLETAAEPDTPNADGKTPFNLASTGGHLAVTRLIRQY 1407
            R + +  + ++  GHKT AF  Q+           E CFSLM   RTLDL A S  +A+ W+ +L  L                +S S  S   S  ++ T+ + F+     +K  D +          +S +L                          A   +   +  WR R+F          +L   + GCP+DL++ G+GDT L+LACR GD +LV  CL R +RNDPHP+FG+TALQ AV S Q  C  +LL TAA S  D+ + NH D N + PLHVA+R G    ++ LL+HGA++ +V+  G  XXXXXXXXXXXXXXXXXX   GD+VL   +  G+  LH AA SG+ A V LLLE+AA     N  G++ +++A          LI +Y
Sbjct:  516 RSLDLALVTEICEGHKTAAFTAQSESS---VAKEEEKCFSLMMQARTLDLVAASKEEARIWISSLREL----------------ISASGSSNDASLASARTI-EGFKKSAIISKGRDGN----------VSGKL-------------------------IAAPTNKRMLAGWRNRIFDLARNDRLDEILECLEDGCPIDLLEGGTGDTLLILACRRGDAELVELCLSRRARNDPHPEFGETALQVAVNSSQAHCVGLLLSTAAKSDMDSEIVNHIDSNNDAPLHVAARHGDLACLQLLLHHGADICVVEELGRTXXXXXXXXXXXXXXXXXXDVGGDSVLNSGDHDGETALHYAARSGNEAMVTLLLESAANVHAYNVQGESAYDVAVREQQRQCAELISKY 862          
BLAST of mRNA_S-dermatodea_contig938.17418.1 vs. uniprot
Match: A0A833TSV8_PHYIN (Formin Homology 2 Domain n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TSV8_PHYIN)

HSP 1 Score: 168 bits (426), Expect = 2.320e-39
Identity = 141/419 (33.65%), Postives = 203/419 (48.45%), Query Frame = 1
Query:  151 LAFIWVDPERDLQKSPPREMGIDEIMDVARGHKTPAFWQQAAHRGIHTLPTPELCFSLMGHDRTLDLAAESLSDAKRWVRALVGLALRNKRGELNTGDAFAVSMSPRSRLESTTTSATVPQRFETLGANNKSIDPHRWEETAGTEAISPRLPRRHSAAAKESTEEPHAYRDPPTGENAGEWSVNTMRAWRRRLFPAVSRGDTVAVLALFDQGCPVDLVQTGSGDTTLLLACRLGDIDLVAECLRRGSRNDPHPDFGQTALQAAVASGQEECAVILLETAAPSGSDAVVANHKDPNRETPLHVASRRGYSGIVEALLYHGANLRLVDRDGNXXXXXXXXXXXXXXXXXXXXXXGDAVLEERNARGDRVLHPAAASGHIACVQLLLETAAEPDTPNADGKTPFNLASTGGHLAVTRLIRQY 1407
            L   W DP    +K+  R + +  + ++  GH T AF   AA    + +   E CFSL+   RTLDL A S  +A+ WV  L  L    +                 S ++++  SA   + F+    +++  +   ++ +    A +P                                +   + AWR R+F          +L   + GCP+DL++ G+GDT L+LACRLG+ +LV  CL R ++NDPHP+FG+TALQ AV S    C  +LL TAA S  D  + NH DPN + PLHVA+R G    ++ LL+HGA++ +V+  G  XXXXXXXXXXXXXXXXXXXXXGD+VL   +  GD                  LE+AA     N   +T +++A          LI +Y
Sbjct:  498 LQITWGDPTSAERKNF-RSVDLALVTEIREGHSTAAF---AAQTESNVVKEKEKCFSLVMRARTLDLVAASKEEAQIWVNNLRDLLFPAE-----------------SSMDASVLSARTIESFKQSALSSRGEE---YKSSGKPTATAP--------------------------------TKRMIAAWRNRIFNLARNDRLDDILESLEDGCPIDLLEGGTGDTLLMLACRLGNAELVELCLSRRAKNDPHPEFGETALQVAVNSLHAHCVGLLLSTAAKSDMDTEIVNHIDPNNDAPLHVAARHGDLACLQLLLHHGADICVVEEFGRTXXXXXXXXXXXXXXXXXXXXXGDSVLNSGDHDGDXXXXXXXXXXXXXXXXXXLESAANVFATNVHKETAYDIAVREKQQRCAELISRY 860          
BLAST of mRNA_S-dermatodea_contig938.17418.1 vs. uniprot
Match: A0A5D6Y760_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y760_9STRA)

HSP 1 Score: 161 bits (407), Expect = 4.640e-37
Identity = 154/463 (33.26%), Postives = 214/463 (46.22%), Query Frame = 1
Query:   34 NGRLIVKPTVSGRTDDTSSLGGQRGGEDDSSIRVCAAWPLA---FIWVDPERDLQ-KSPPREMGIDEIMDVARGHKTPAFWQQAAHRGIHTLPTP-ELCFSLMGHDRTLDLAAESLSDAKRWVRALVGLALRNKRGELNTGDAFAVSMSPRSRLESTTTSATVPQRFETLGANNKSIDPHRWEETAGTEAISPRLPRRHSAAAKESTEEPHAYRDPPTGENAGEWSVNTMRAWRRRLFPAVSRGDTVAVLALFDQGCPVDLVQTGSGDTTLLLACRLGDIDLVAECLRRGSRNDPHPDFGQTALQAAVASGQEECAVILLETAAPSGSDAVVANHKDPNRETPLHVASRRGYSGIVEALLYHGANLRLVDRDGNXXXXXXXXXXXXXXXXXXXXXXGDAVLEERNARGDRVLHPAAASGHIACVQLLLETAAEPDTPNADGKTPFNLASTGGHLAVTRLIRQY 1407
            NG L+ K     R+   S++  Q        + V AA   A     W DP      +     + +  + +V  GH+TPAF +Q       ++    + CFSL+   RTLDL A    +A+ WV AL GL  +   G+                   +  SA V + ++       ++ P    +  G      R P   S A+K                         + AWR  +F    R  T  +      GCPVDL++ G GDT L++ACRLG + LVA CL   ++NDPHP+F                          S  D+ + NH D + + PLHVA+R G    ++ LL+HGA++ +VD  G XXXXXXXXXXXXXXXXXXXXXXGD+VL   +  GD  LH AA +G  A V+LLLE+AA   + NA  +TP+++A      A   LI QY
Sbjct:  487 NGALLFKVPYHSRSLGVSAIRRQW-------VMVAAASAGASYEITWCDPTASASDRKSASSLDLTLVTEVRDGHRTPAFERQLQTASSSSVVRDRDKCFSLVTKARTLDLVASCKEEARVWVSALRGLLFQRPGGD-------------------SLLSARVMEDYKAA-----ALSPRPASQQLGKSHPPGRTPADSSGASKA-----------------------RLAAWRSVVFDLARRCRTQEIAECLHDGCPVDLLEPGDGDTMLMIACRLGHVQLVALCLSWRAKNDPHPEFXXXXXXXXXXXXXXXXXXXXXXXXXXSEMDSEIVNHIDSSNDAPLHVAARHGDLACLQLLLHHGADICVVDEFGRXXXXXXXXXXXXXXXXXXXXXXGDSVLNAGDHDGDTALHYAALAGTDAIVKLLLESAANVFSANAQDETPYDVALREKQQASAFLISQY 895          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig938.17418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE78_ECTSI1.440e-22054.13Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L0C2_9PHAE3.350e-21752.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAX5_9STRA1.010e-5535.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4V705_9STRA1.460e-4931.52Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A662XT93_9STRA6.390e-4836.13PH domain-containing protein n=1 Tax=Nothophytopht... [more]
A0A662WTT4_9STRA3.590e-4736.36Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A6G0M401_9STRA6.650e-4636.56Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A0P1AB56_PLAHL1.010e-4536.57Ankyrin n=1 Tax=Plasmopara halstedii TaxID=4781 Re... [more]
A0A833TSV8_PHYIN2.320e-3933.65Formin Homology 2 Domain n=2 Tax=Phytophthora infe... [more]
A0A5D6Y760_9STRA4.640e-3733.26Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig938contigS-dermatodea_contig938:3420..6714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score662.9
Seed ortholog evalue1.8e-187
Seed eggNOG ortholog2880.D8LE78
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-00_001220.1
Exons4
Model size2301
Cds size2301
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig938.17418.1prot_S-dermatodea_contig938.17418.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig938 3420..6714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925404.1718361-CDS-S-dermatodea_contig938:3419..47411622925404.1718361-CDS-S-dermatodea_contig938:3419..4741Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig938 3420..4741 +
1694079910.588427-CDS-S-dermatodea_contig938:3419..47411694079910.588427-CDS-S-dermatodea_contig938:3419..4741Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig938 3420..4741 +
1622925404.183433-CDS-S-dermatodea_contig938:5142..53551622925404.183433-CDS-S-dermatodea_contig938:5142..5355Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig938 5143..5355 +
1694079910.6053178-CDS-S-dermatodea_contig938:5142..53551694079910.6053178-CDS-S-dermatodea_contig938:5142..5355Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig938 5143..5355 +
1622925404.1955025-CDS-S-dermatodea_contig938:5785..59411622925404.1955025-CDS-S-dermatodea_contig938:5785..5941Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig938 5786..5941 +
1694079910.617126-CDS-S-dermatodea_contig938:5785..59411694079910.617126-CDS-S-dermatodea_contig938:5785..5941Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig938 5786..5941 +
1622925404.2055798-CDS-S-dermatodea_contig938:6104..67141622925404.2055798-CDS-S-dermatodea_contig938:6104..6714Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig938 6105..6714 +
1694079910.6362286-CDS-S-dermatodea_contig938:6104..67141694079910.6362286-CDS-S-dermatodea_contig938:6104..6714Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig938 6105..6714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig938.17418.1

>prot_S-dermatodea_contig938.17418.1 ID=prot_S-dermatodea_contig938.17418.1|Name=mRNA_S-dermatodea_contig938.17418.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=767bp
IKPAEGLLTTANGRLIVKPTVSGRTDDTSSLGGQRGGEDDSSIRVCAAWP
LAFIWVDPERDLQKSPPREMGIDEIMDVARGHKTPAFWQQAAHRGIHTLP
TPELCFSLMGHDRTLDLAAESLSDAKRWVRALVGLALRNKRGELNTGDAF
AVSMSPRSRLESTTTSATVPQRFETLGANNKSIDPHRWEETAGTEAISPR
LPRRHSAAAKESTEEPHAYRDPPTGENAGEWSVNTMRAWRRRLFPAVSRG
DTVAVLALFDQGCPVDLVQTGSGDTTLLLACRLGDIDLVAECLRRGSRND
PHPDFGQTALQAAVASGQEECAVILLETAAPSGSDAVVANHKDPNRETPL
HVASRRGYSGIVEALLYHGANLRLVDRDGNTPLHGAARAGHAGALSSLLD
AGGDAVLEERNARGDRVLHPAAASGHIACVQLLLETAAEPDTPNADGKTP
FNLASTGGHLAVTRLIRQYAPAAGTASGGDAKIRADGPRDSGGGATADAL
PRPHASGSSANCPAGTTEHRSRDLEQRCYSAASLGRHSLEIFGSPSTRLT
AQSFGDNSFEESPRRSSRHHEEDDSGVSPSISRSQGQPPTVDTASPAGDG
CDSSSAVPGAPVHGSLFDGLQVYVVGGRQPLGSQHDIASAGGMLSSTASN
AGPTTEYESCLSHQQQQQERLHHSRAPLSSSYSTAAVSSTAWGSFLSSPS
TMAPSPPCGNPAASPIADSSANVNSDGRCASMAYSTTDGRQISNPLSGGL
CAVPGSARALARMIHFS
back to top

mRNA from alignment at S-dermatodea_contig938:3420..6714+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig938.17418.1 ID=mRNA_S-dermatodea_contig938.17418.1|Name=mRNA_S-dermatodea_contig938.17418.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3295bp|location=Sequence derived from alignment at S-dermatodea_contig938:3420..6714+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTAAGCCCGCCGAGGGACTGCTAACCACGGCGAACGGACGCTTGATTGT AAAACCGACGGTGTCGGGGCGAACGGATGACACCAGTTCATTGGGCGGAC AAAGAGGCGGGGAAGATGATTCTTCGATACGCGTGTGTGCCGCTTGGCCT CTCGCATTTATCTGGGTCGACCCTGAACGTGACCTGCAAAAGTCTCCGCC TCGAGAGATGGGCATCGACGAAATCATGGACGTTGCGAGGGGTCACAAGA CGCCGGCCTTTTGGCAGCAGGCTGCGCACCGGGGTATTCACACGCTTCCC ACGCCGGAGCTGTGCTTCAGTCTGATGGGACACGACAGAACGCTCGATCT TGCAGCCGAAAGTCTCTCGGACGCAAAACGGTGGGTGCGCGCGCTCGTGG GATTAGCACTGAGAAATAAGAGGGGAGAGCTCAACACTGGCGATGCGTTT GCCGTTTCCATGTCCCCTCGATCGAGGCTGGAGTCTACCACCACTTCCGC AACTGTGCCCCAGCGTTTTGAGACTTTGGGCGCTAACAACAAGTCGATAG ATCCGCATCGATGGGAAGAAACAGCAGGAACCGAGGCAATATCACCAAGG CTGCCGCGCCGGCACTCTGCTGCAGCGAAAGAGTCGACGGAGGAGCCACA CGCATACAGGGACCCGCCAACGGGAGAAAATGCCGGAGAATGGTCGGTCA ATACAATGCGTGCTTGGCGACGGCGGCTATTTCCAGCCGTCTCGCGAGGG GATACCGTGGCCGTTCTTGCCTTGTTTGACCAAGGCTGCCCTGTAGATTT AGTCCAGACAGGTAGCGGAGATACCACCCTACTCCTTGCGTGTCGCCTGG GTGACATTGACCTAGTTGCGGAGTGCCTTCGTCGCGGTTCGCGAAACGAC CCTCACCCAGACTTCGGGCAGACAGCGCTACAGGCGGCGGTGGCCTCGGG GCAGGAAGAATGCGCGGTTATTCTCCTCGAAACAGCCGCTCCTAGCGGGT CCGACGCGGTCGTGGCCAACCACAAAGATCCCAACAGGGAGACCCCACTT CACGTCGCGAGCCGGCGCGGGTACAGCGGCATCGTGGAGGCGCTGCTGTA CCATGGAGCCAACTTACGTCTTGTCGACCGGGACGGAAACACACCGCTAC ATGGAGCGGCGAGGGCCGGGCACGCTGGTGCGCTTTCTTCCCTTCTTGAT GCGGGCGGGGACGCCGTTTTGGAAGAACGAAACGCTAGGGGGGATAGGGT TTTACATCCAGCTGCCGCCTCCGGACACATTGCCTGCGTACAGCTCCTGC TGGAAACAGCAGCAGAACCAGAGTAAGTGGCGTGACTCCGGGGAGCGCGT GTTTACCCCTAATGATTGCAGATGCGCGCTCCAGTCTTTAGGGTTGATTT AGCGATCCCCGCGAGGTCCTTGTATCGTTGTTCTGGAATCGACGTCAACT AGAACTGGCCCGGGGTTCGGGAGATTCCTTAGTGCCGTGAACGAAAAAGT TCAAACCCTCGACCGATTTATCGATATCTAGACATATTTAGTGGTCGGTC ATGCACAGTCGTCATTTTACGCCGTTGCACCATCATCATCCGTAGGCGCA CCTACCGTTTACCATGTGTTCATCGCTCAGGGACGTAGCCTAACTTTCCA GTCATTGGCATCGCTCCAAGCTCATTCCTTGTCGTTCGCCACCTCTAAAT GTCGACCCGTCGCTGTACCGTAGCACTCCGAACGCAGACGGTAAAACCCC GTTCAACCTGGCCTCGACCGGTGGTCATCTTGCGGTAACGAGGCTCATAC GGCAATACGCCCCAGCGGCGGGAACTGCATCGGGGGGCGATGCCAAAATT CGGGCCGACGGACCAAGAGATTCAGGGGGGGGGGCGACAGCCGATGCACT ACCAAGACCCCATGCGAGTGGCTCTTCGGCGAATTGGTGAGCGCCAGTGC TGAATCACGATTGCCCGGAAGACCAGCCAACGCCGTAGATTTTAAGATGA TGTTTTACTTGGTATTCTCCAAAGCATCGACTTTGCGCTCTGAGTGCGAT TCCGCACGTCCTTGCCGTTTTTTGCTTATCTCTAGAGTGTACTCTTTGGC GTAGTGTTGCACGTGTCGTTACTGTCGTTCTACCCTCGCTCCCTTCCCGA GCCAAATTGCCACTGTTCTAAAGGTGGACTATTTCTAATAATTTATATAA GCGCTGCTCTGCCCTTCTAGGCCATAGGTCTTAGGCTTGCCGTGGTATTT TGTGTCTATTCACGTTCATCGAGCACAAGCCGCGACAATGTCCGTGAAAA GGAAGAAGTACTCTCTGGGTGAAAAAATATGACCACCCTTCCTTGCTGTC CACACCCTACCTACAGTCCTGCTGGCACCACCGAACATCGAAGCCGAGAT CTTGAGCAACGTTGTTACTCGGCTGCGAGCCTAGGCCGCCATTCCCTTGA AATATTTGGGTCACCGTCAACAAGGTTGACAGCTCAAAGCTTTGGCGACA ACAGCTTCGAGGAGAGTCCGAGGTAGGTTTGCGGCACAGTTCGCAAGTCA GGGAGTGACACGAGTCGAAAGGCTCAAGAATATTCGTCAGACTGTTCCTT CTGTACCTTATCCGTACTCGTATTGGCAAGCCTCATCTGTGGCAATATCT TATCGGTCGACCCCCTTGCTCGGCAGGCGTTCCAGACGTTCTTCCAGACA CCACGAGGAGGACGACAGTGGGGTATCGCCGTCAATTTCTCGGTCGCAGG GGCAACCACCGACCGTCGATACTGCATCGCCGGCGGGTGATGGGTGCGAC TCCTCCTCCGCTGTACCCGGCGCCCCGGTCCACGGTAGCCTCTTTGACGG TTTGCAAGTTTACGTGGTCGGGGGCAGGCAGCCACTTGGCTCGCAACATG ATATTGCGTCGGCAGGAGGGATGCTTTCGTCAACCGCCTCGAACGCCGGT CCGACGACAGAATACGAGAGCTGTCTTTCTCACCAGCAGCAGCAGCAGGA ACGCCTTCACCATTCCCGAGCACCACTTTCGTCGTCGTATTCGACTGCAG CCGTGAGTTCGACGGCCTGGGGTAGCTTTTTGAGCTCGCCATCGACCATG GCACCCTCTCCACCGTGCGGAAATCCGGCGGCTTCACCGATCGCTGATTC GTCGGCAAACGTGAATAGCGATGGTCGATGTGCGTCGATGGCATATTCCA CCACAGACGGAAGGCAGATTAGCAACCCCCTTTCCGGAGGTCTATGTGCT GTTCCCGGCAGTGCCCGAGCCCTGGCGAGGATGATCCATTTCAGT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig938:3420..6714+

>mRNA_S-dermatodea_contig938.17418.1 ID=mRNA_S-dermatodea_contig938.17418.1|Name=mRNA_S-dermatodea_contig938.17418.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4602bp|location=Sequence derived from alignment at S-dermatodea_contig938:3420..6714+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTAAGCCCGCCGAGGGACTGCTAACCACGGCGAACGGACGCTTGATTGT
AAAACCGACGGTGTCGGGGCGAACGGATGACACCAGTTCATTGGGCGGAC
AAAGAGGCGGGGAAGATGATTCTTCGATACGCGTGTGTGCCGCTTGGCCT
CTCGCATTTATCTGGGTCGACCCTGAACGTGACCTGCAAAAGTCTCCGCC
TCGAGAGATGGGCATCGACGAAATCATGGACGTTGCGAGGGGTCACAAGA
CGCCGGCCTTTTGGCAGCAGGCTGCGCACCGGGGTATTCACACGCTTCCC
ACGCCGGAGCTGTGCTTCAGTCTGATGGGACACGACAGAACGCTCGATCT
TGCAGCCGAAAGTCTCTCGGACGCAAAACGGTGGGTGCGCGCGCTCGTGG
GATTAGCACTGAGAAATAAGAGGGGAGAGCTCAACACTGGCGATGCGTTT
GCCGTTTCCATGTCCCCTCGATCGAGGCTGGAGTCTACCACCACTTCCGC
AACTGTGCCCCAGCGTTTTGAGACTTTGGGCGCTAACAACAAGTCGATAG
ATCCGCATCGATGGGAAGAAACAGCAGGAACCGAGGCAATATCACCAAGG
CTGCCGCGCCGGCACTCTGCTGCAGCGAAAGAGTCGACGGAGGAGCCACA
CGCATACAGGGACCCGCCAACGGGAGAAAATGCCGGAGAATGGTCGGTCA
ATACAATGCGTGCTTGGCGACGGCGGCTATTTCCAGCCGTCTCGCGAGGG
GATACCGTGGCCGTTCTTGCCTTGTTTGACCAAGGCTGCCCTGTAGATTT
AGTCCAGACAGGTAGCGGAGATACCACCCTACTCCTTGCGTGTCGCCTGG
GTGACATTGACCTAGTTGCGGAGTGCCTTCGTCGCGGTTCGCGAAACGAC
CCTCACCCAGACTTCGGGCAGACAGCGCTACAGGCGGCGGTGGCCTCGGG
GCAGGAAGAATGCGCGGTTATTCTCCTCGAAACAGCCGCTCCTAGCGGGT
CCGACGCGGTCGTGGCCAACCACAAAGATCCCAACAGGGAGACCCCACTT
CACGTCGCGAGCCGGCGCGGGTACAGCGGCATCGTGGAGGCGCTGCTGTA
CCATGGAGCCAACTTACGTCTTGTCGACCGGGACGGAAACACACCGCTAC
ATGGAGCGGCGAGGGCCGGGCACGCTGGTGCGCTTTCTTCCCTTCTTGAT
GCGGGCGGGGACGCCGTTTTGGAAGAACGAAACGCTAGGGGGGATAGGGT
TTTACATCCAGCTGCCGCCTCCGGACACATTGCCTGCGTACAGCTCCTGC
TGGAAACAGCAGCAGAACCAGAATTAAGCCCGCCGAGGGACTGCTAACCA
CGGCGAACGGACGCTTGATTGTAAAACCGACGGTGTCGGGGCGAACGGAT
GACACCAGTTCATTGGGCGGACAAAGAGGCGGGGAAGATGATTCTTCGAT
ACGCGTGTGTGCCGCTTGGCCTCTCGCATTTATCTGGGTCGACCCTGAAC
GTGACCTGCAAAAGTCTCCGCCTCGAGAGATGGGCATCGACGAAATCATG
GACGTTGCGAGGGGTCACAAGACGCCGGCCTTTTGGCAGCAGGCTGCGCA
CCGGGGTATTCACACGCTTCCCACGCCGGAGCTGTGCTTCAGTCTGATGG
GACACGACAGAACGCTCGATCTTGCAGCCGAAAGTCTCTCGGACGCAAAA
CGGTGGGTGCGCGCGCTCGTGGGATTAGCACTGAGAAATAAGAGGGGAGA
GCTCAACACTGGCGATGCGTTTGCCGTTTCCATGTCCCCTCGATCGAGGC
TGGAGTCTACCACCACTTCCGCAACTGTGCCCCAGCGTTTTGAGACTTTG
GGCGCTAACAACAAGTCGATAGATCCGCATCGATGGGAAGAAACAGCAGG
AACCGAGGCAATATCACCAAGGCTGCCGCGCCGGCACTCTGCTGCAGCGA
AAGAGTCGACGGAGGAGCCACACGCATACAGGGACCCGCCAACGGGAGAA
AATGCCGGAGAATGGTCGGTCAATACAATGCGTGCTTGGCGACGGCGGCT
ATTTCCAGCCGTCTCGCGAGGGGATACCGTGGCCGTTCTTGCCTTGTTTG
ACCAAGGCTGCCCTGTAGATTTAGTCCAGACAGGTAGCGGAGATACCACC
CTACTCCTTGCGTGTCGCCTGGGTGACATTGACCTAGTTGCGGAGTGCCT
TCGTCGCGGTTCGCGAAACGACCCTCACCCAGACTTCGGGCAGACAGCGC
TACAGGCGGCGGTGGCCTCGGGGCAGGAAGAATGCGCGGTTATTCTCCTC
GAAACAGCCGCTCCTAGCGGGTCCGACGCGGTCGTGGCCAACCACAAAGA
TCCCAACAGGGAGACCCCACTTCACGTCGCGAGCCGGCGCGGGTACAGCG
GCATCGTGGAGGCGCTGCTGTACCATGGAGCCAACTTACGTCTTGTCGAC
CGGGACGGAAACACACCGCTACATGGAGCGGCGAGGGCCGGGCACGCTGG
TGCGCTTTCTTCCCTTCTTGATGCGGGCGGGGACGCCGTTTTGGAAGAAC
GAAACGCTAGGGGGGATAGGGTTTTACATCCAGCTGCCGCCTCCGGACAC
ATTGCCTGCGTACAGCTCCTGCTGGAAACAGCAGCAGAACCAGACACTCC
GAACGCAGACGGTAAAACCCCGTTCAACCTGGCCTCGACCGGTGGTCATC
TTGCGGTAACGAGGCTCATACGGCAATACGCCCCAGCGGCGGGAACTGCA
TCGGGGGGCGATGCCAAAATTCGGGCCGACGGACCAAGAGATTCAGGGGG
GGGGGCGACAGCCGATGCACTACCAAGACCCCATGCGAGTGGCTCTTCGG
CGAATTGCACTCCGAACGCAGACGGTAAAACCCCGTTCAACCTGGCCTCG
ACCGGTGGTCATCTTGCGGTAACGAGGCTCATACGGCAATACGCCCCAGC
GGCGGGAACTGCATCGGGGGGCGATGCCAAAATTCGGGCCGACGGACCAA
GAGATTCAGGGGGGGGGGCGACAGCCGATGCACTACCAAGACCCCATGCG
AGTGGCTCTTCGGCGAATTGTCCTGCTGGCACCACCGAACATCGAAGCCG
AGATCTTGAGCAACGTTGTTACTCGGCTGCGAGCCTAGGCCGCCATTCCC
TTGAAATATTTGGGTCACCGTCAACAAGGTTGACAGCTCAAAGCTTTGGC
GACAACAGCTTCGAGGAGAGTCCGAGTCCTGCTGGCACCACCGAACATCG
AAGCCGAGATCTTGAGCAACGTTGTTACTCGGCTGCGAGCCTAGGCCGCC
ATTCCCTTGAAATATTTGGGTCACCGTCAACAAGGTTGACAGCTCAAAGC
TTTGGCGACAACAGCTTCGAGGAGAGTCCGAGACGTTCTTCCAGACACCA
CGAGGAGGACGACAGTGGGGTATCGCCGTCAATTTCTCGGTCGCAGGGGC
AACCACCGACCGTCGATACTGCATCGCCGGCGGGTGATGGGTGCGACTCC
TCCTCCGCTGTACCCGGCGCCCCGGTCCACGGTAGCCTCTTTGACGGTTT
GCAAGTTTACGTGGTCGGGGGCAGGCAGCCACTTGGCTCGCAACATGATA
TTGCGTCGGCAGGAGGGATGCTTTCGTCAACCGCCTCGAACGCCGGTCCG
ACGACAGAATACGAGAGCTGTCTTTCTCACCAGCAGCAGCAGCAGGAACG
CCTTCACCATTCCCGAGCACCACTTTCGTCGTCGTATTCGACTGCAGCCG
TGAGTTCGACGGCCTGGGGTAGCTTTTTGAGCTCGCCATCGACCATGGCA
CCCTCTCCACCGTGCGGAAATCCGGCGGCTTCACCGATCGCTGATTCGTC
GGCAAACGTGAATAGCGATGGTCGATGTGCGTCGATGGCATATTCCACCA
CAGACGGAAGGCAGATTAGCAACCCCCTTTCCGGAGGTCTATGTGCTGTT
CCCGGCAGTGCCCGAGCCCTGGCGAGGATGATCCATTTCAGTACGTTCTT
CCAGACACCACGAGGAGGACGACAGTGGGGTATCGCCGTCAATTTCTCGG
TCGCAGGGGCAACCACCGACCGTCGATACTGCATCGCCGGCGGGTGATGG
GTGCGACTCCTCCTCCGCTGTACCCGGCGCCCCGGTCCACGGTAGCCTCT
TTGACGGTTTGCAAGTTTACGTGGTCGGGGGCAGGCAGCCACTTGGCTCG
CAACATGATATTGCGTCGGCAGGAGGGATGCTTTCGTCAACCGCCTCGAA
CGCCGGTCCGACGACAGAATACGAGAGCTGTCTTTCTCACCAGCAGCAGC
AGCAGGAACGCCTTCACCATTCCCGAGCACCACTTTCGTCGTCGTATTCG
ACTGCAGCCGTGAGTTCGACGGCCTGGGGTAGCTTTTTGAGCTCGCCATC
GACCATGGCACCCTCTCCACCGTGCGGAAATCCGGCGGCTTCACCGATCG
CTGATTCGTCGGCAAACGTGAATAGCGATGGTCGATGTGCGTCGATGGCA
TATTCCACCACAGACGGAAGGCAGATTAGCAACCCCCTTTCCGGAGGTCT
ATGTGCTGTTCCCGGCAGTGCCCGAGCCCTGGCGAGGATGATCCATTTCA
GT
back to top