mRNA_S-dermatodea_contig93781.17417.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig93781.17417.1
Unique NamemRNA_S-dermatodea_contig93781.17417.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig93781.17417.1 vs. uniprot
Match: D7FN52_ECTSI (Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN52_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 3.920e-26
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:    7 EDVWSQAQQQQLEAALARYPMGMDKNERWAAIAAAVPGKSKKLCVERFKFVKTQLLAKKRA 189
            EDVWSQAQQQQLE ALAR+PMGMDKNERWA+I+AAVPGKSKK CVERFKFVKTQLLAKK+A
Sbjct:  552 EDVWSQAQQQQLETALARFPMGMDKNERWASISAAVPGKSKKQCVERFKFVKTQLLAKKKA 612
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BLAST of mRNA_S-dermatodea_contig93781.17417.1 vs. uniprot
Match: A0A7S2WRH7_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WRH7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.540e-12
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   16 WSQAQQQQLEAALARYPMGMDKNERWAAIAAAVPGKSKKLCVERFKFVKTQLLAK 180
            WS  QQ  L+ AL R+P  M+KNERW AIA AV GKSKK CVER+KF++ QLL+K
Sbjct:  293 WSPGQQVALDQALERFPASMEKNERWKAIAKAVKGKSKKECVERYKFIRQQLLSK 347
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BLAST of mRNA_S-dermatodea_contig93781.17417.1 vs. uniprot
Match: A0A086Q3J8_TOXGO (DnaJ domain-containing protein n=1 Tax=Toxoplasma gondii VAND TaxID=933077 RepID=A0A086Q3J8_TOXGO)

HSP 1 Score: 68.6 bits (166), Expect = 2.160e-11
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   16 WSQAQQQQLEAALARYPMGMDKNERWAAIAAAVPGKSKKLCVERFKFVKTQLLAKK 183
            W+ AQQ  LE ALA++P  M  NERW AIAA VPGK+KK CVERF+ ++  +LAKK
Sbjct:  403 WTPAQQMALEKALAKHPATMPANERWTAIAAEVPGKTKKECVERFRQIRAAILAKK 458
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BLAST of mRNA_S-dermatodea_contig93781.17417.1 vs. uniprot
Match: S8GNH8_TOXGM (DnaJ domain-containing protein n=19 Tax=Toxoplasma gondii TaxID=5811 RepID=S8GNH8_TOXGM)

HSP 1 Score: 68.6 bits (166), Expect = 2.260e-11
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   16 WSQAQQQQLEAALARYPMGMDKNERWAAIAAAVPGKSKKLCVERFKFVKTQLLAKK 183
            W+ AQQ  LE ALA++P  M  NERW AIAA VPGK+KK CVERF+ ++  +LAKK
Sbjct:  657 WTPAQQMALEKALAKHPATMPANERWTAIAAEVPGKTKKECVERFRQIRAAILAKK 712
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BLAST of mRNA_S-dermatodea_contig93781.17417.1 vs. uniprot
Match: F0VF74_NEOCL (Uncharacterized protein n=2 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VF74_NEOCL)

HSP 1 Score: 67.4 bits (163), Expect = 5.730e-11
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   16 WSQAQQQQLEAALARYPMGMDKNERWAAIAAAVPGKSKKLCVERFKFVKTQLLAKK 183
            W+ AQQ  LE ALA++P  M  NERW AIAA VPGK+KK CVERF+ ++  +LAKK
Sbjct:  621 WTPAQQLALEKALAKHPATMPANERWTAIAADVPGKTKKECVERFRQIRAAILAKK 676
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BLAST of mRNA_S-dermatodea_contig93781.17417.1 vs. uniprot
Match: A0A2R5GRA3_9STRA (DnaJ-like subfamily C member 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRA3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.900e-10
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   13 VWSQAQQQQLEAALARYPMGMDKNERWAAIAAAVPGKSKKLCVERFK 153
            +W++ QQ  L+AALA +P  MDKNERW +IA AVPGK+K+ CV+RFK
Sbjct:  241 LWTEEQQTALDAALAEFPASMDKNERWKSIAKAVPGKTKRDCVDRFK 287
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BLAST of mRNA_S-dermatodea_contig93781.17417.1 vs. uniprot
Match: A0A813DMZ4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DMZ4_POLGL)

HSP 1 Score: 61.2 bits (147), Expect = 8.370e-9
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:   10 DVWSQAQQQQLEAALARYPMGMDKNERWAAIAAAVPGKSKKLCVERFKFVKTQL 171
            + W+  QQ+ LE ALA++P  +  NERW  IAA VPG+++K CV+RFK+++ QL
Sbjct:  399 EEWTAVQQKALEGALAKFPASLPVNERWTQIAAEVPGRTRKQCVDRFKWLREQL 452
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BLAST of mRNA_S-dermatodea_contig93781.17417.1 vs. uniprot
Match: A0A2A9M9H1_9APIC (DnaJ domain-containing protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9M9H1_9APIC)

HSP 1 Score: 59.7 bits (143), Expect = 2.920e-8
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   16 WSQAQQQQLEAALARYPMGMDKNERWAAIAAAVPGKSKKLCVERFKFV 159
            W+ AQQ  LE ALA++P  M  +ERW AIAA VPGK+KK CVERF+ V
Sbjct:  663 WTPAQQLALEKALAKHPASMPASERWTAIAADVPGKTKKECVERFRQV 710
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BLAST of mRNA_S-dermatodea_contig93781.17417.1 vs. uniprot
Match: A0A6H5GQI7_9HEMI (Uncharacterized protein n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GQI7_9HEMI)

HSP 1 Score: 57.0 bits (136), Expect = 1.700e-7
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    7 EDVWSQAQQQQLEAALARYPMGMDKNERWAAIAAAVPGKSKKLCVERFKFVKTQLLAKKR 186
            + VWS  QQ+ LEAALA +P G   ++RWA IAAAVPGKSK+ C+ R+K    +L+ KK+
Sbjct:  183 DSVWSPIQQKALEAALAAHPKG-STSDRWARIAAAVPGKSKEECIARYKLCH-ELVKKKK 240
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BLAST of mRNA_S-dermatodea_contig93781.17417.1 vs. uniprot
Match: A0A7J6MPI4_PERCH (DnaJ (Hsp40), sub C, member 2 n=2 Tax=Alveolata TaxID=33630 RepID=A0A7J6MPI4_PERCH)

HSP 1 Score: 57.4 bits (137), Expect = 1.870e-7
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   16 WSQAQQQQLEAALARYPMGMDKNERWAAIAAAVPGKSKKLCVERFKFVKTQLLAKKRA 189
            W+ AQQ+ LE  LA +P  +  NERW  IA  VPGK+KK CV RFK+++ +L+AK +A
Sbjct:  544 WTPAQQKALEKGLATHPASLGANERWKRIADDVPGKTKKECVARFKYIR-ELVAKGQA 600
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig93781.17417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN52_ECTSI3.920e-2690.16Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7S2WRH7_9STRA2.540e-1263.64Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A086Q3J8_TOXGO2.160e-1160.71DnaJ domain-containing protein n=1 Tax=Toxoplasma ... [more]
S8GNH8_TOXGM2.260e-1160.71DnaJ domain-containing protein n=19 Tax=Toxoplasma... [more]
F0VF74_NEOCL5.730e-1160.71Uncharacterized protein n=2 Tax=Neospora caninum (... [more]
A0A2R5GRA3_9STRA6.900e-1061.70DnaJ-like subfamily C member 2 n=1 Tax=Hondaea fer... [more]
A0A813DMZ4_POLGL8.370e-950.00Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A2A9M9H1_9APIC2.920e-862.50DnaJ domain-containing protein n=1 Tax=Besnoitia b... [more]
A0A6H5GQI7_9HEMI1.700e-753.33Uncharacterized protein n=2 Tax=Nesidiocoris tenui... [more]
A0A7J6MPI4_PERCH1.870e-751.72DnaJ (Hsp40), sub C, member 2 n=2 Tax=Alveolata Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig93781contigS-dermatodea_contig93781:124..420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue8.3e-13
Seed eggNOG ortholog2880.D7FN52
KEGG koko:K09522
GOsGO:0000082,GO:0000122,GO:0000278,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0000988,GO:0000989,GO:0001012,GO:0001067,GO:0001076,GO:0001077,GO:0001134,GO:0001135,GO:0001228,GO:0001701,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006996,GO:0007049,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0016043,GO:0016070,GO:0017145,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019904,GO:0022402,GO:0022407,GO:0022409,GO:0030001,GO:0030097,GO:0030098,GO:0030099,GO:0030154,GO:0030155,GO:0030183,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0033043,GO:0033044,GO:0034097,GO:0034641,GO:0034645,GO:0034654,GO:0035295,GO:0042113,GO:0042221,GO:0042592,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043370,GO:0043372,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045321,GO:0045580,GO:0045582,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045622,GO:0045624,GO:0045785,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046634,GO:0046635,GO:0046637,GO:0046638,GO:0046649,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048536,GO:0048538,GO:0048565,GO:0048566,GO:0048568,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048872,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051249,GO:0051251,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051301,GO:0051569,GO:0051570,GO:0051571,GO:0051574,GO:0051716,GO:0055123,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070741,GO:0070838,GO:0070887,GO:0071310,GO:0071345,GO:0071354,GO:0071704,GO:0071840,GO:0071987,GO:0072511,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902105,GO:1902107,GO:1902275,GO:1902679,GO:1902680,GO:1903037,GO:1903039,GO:1903047,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903708,GO:1905269,GO:1990823,GO:1990830,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000514,GO:2000516,GO:2001141,GO:2001252
EggNOG free text desc.ubiquitin modification-dependent histone binding
EggNOG OGsKOG0724@1,KOG0724@2759
Ec32 ortholog descriptionDnaJ (Hsp40) and SANT/Myb domain transcription factor
Ec32 orthologEc-06_008420.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size297
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig93781.17417.1prot_S-dermatodea_contig93781.17417.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig93781 190..363 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925404.072802-UTR-S-dermatodea_contig93781:123..1891622925404.072802-UTR-S-dermatodea_contig93781:123..189Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig93781 124..189 +
1694079910.5315278-UTR-S-dermatodea_contig93781:123..1891694079910.5315278-UTR-S-dermatodea_contig93781:123..189Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig93781 124..189 +
1622925404.0970006-UTR-S-dermatodea_contig93781:363..4201622925404.0970006-UTR-S-dermatodea_contig93781:363..420Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig93781 364..420 +
1694079910.5558748-UTR-S-dermatodea_contig93781:363..4201694079910.5558748-UTR-S-dermatodea_contig93781:363..420Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig93781 364..420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925404.0855176-CDS-S-dermatodea_contig93781:189..3631622925404.0855176-CDS-S-dermatodea_contig93781:189..363Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93781 190..363 +
1694079910.5452182-CDS-S-dermatodea_contig93781:189..3631694079910.5452182-CDS-S-dermatodea_contig93781:189..363Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93781 190..363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig93781.17417.1

>prot_S-dermatodea_contig93781.17417.1 ID=prot_S-dermatodea_contig93781.17417.1|Name=mRNA_S-dermatodea_contig93781.17417.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=58bp
MGMDKNERWAAIAAAVPGKSKKLCVERFKFVKTQLLAKKRAEKKAAEEAA
AANGGGA*
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mRNA from alignment at S-dermatodea_contig93781:124..420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig93781.17417.1 ID=mRNA_S-dermatodea_contig93781.17417.1|Name=mRNA_S-dermatodea_contig93781.17417.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at S-dermatodea_contig93781:124..420+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGACAGGAGGACGTGTGGAGCCAGGCCCAGCAGCAGCAGCTCGAGGCCGC
TCTCGCGCGCTACCCCATGGGGATGGACAAGAATGAGCGCTGGGCGGCCA
TCGCGGCAGCTGTGCCCGGCAAGTCGAAGAAGCTGTGCGTCGAGCGCTTC
AAGTTCGTGAAGACACAGCTGCTGGCGAAAAAGAGGGCGGAGAAGAAGGC
TGCTGAAGAAGCGGCGGCGGCGAATGGAGGGGGTGCCTAGGCGCCGCCCG
CTTAGCGACAAAAAAACAACAAAGGGGGAGAGAGACGGAGGGGAGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig93781:124..420+

>mRNA_S-dermatodea_contig93781.17417.1 ID=mRNA_S-dermatodea_contig93781.17417.1|Name=mRNA_S-dermatodea_contig93781.17417.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at S-dermatodea_contig93781:124..420+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGATGGACAAGAATGAGCGCTGGGCGGCCATCGCGGCAGCTGTGCC
CGGCAAGTCGAAGAAGCTGTGCGTCGAGCGCTTCAAGTTCGTGAAGACAC
AGCTGCTGGCGAAAAAGAGGGCGGAGAAGAAGGCTGCTGAAGAAGCGGCG
GCGGCGAATGGAGGGGGTGCCTAGATGGGGATGGACAAGAATGAGCGCTG
GGCGGCCATCGCGGCAGCTGTGCCCGGCAAGTCGAAGAAGCTGTGCGTCG
AGCGCTTCAAGTTCGTGAAGACACAGCTGCTGGCGAAAAAGAGGGCGGAG
AAGAAGGCTGCTGAAGAAGCGGCGGCGGCGAATGGAGGGGGTGCCTAG
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