mRNA_S-dermatodea_contig9377.17413.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9377.17413.1
Unique NamemRNA_S-dermatodea_contig9377.17413.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9377.17413.1 vs. uniprot
Match: A0A6H5K2U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U9_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.050e-38
Identity = 73/139 (52.52%), Postives = 96/139 (69.06%), Query Frame = 1 
Query:   25 NATIRVDHISKRASLVDVAKMVLDCGEDQAKAALNKLLGPTADADEDCPRLQVNNRGGFTQVANVDFLIEIIWLLPGAIPDDVRREMCHAVCRLCEGDASLVTDTEARHIAMREASLRAHAQGGEKD---DMPAGFELL 432
            +A IRVD  S + S+ DVAK+VL C +++A+ A+ KLLG T+D D D  R+Q+NNRG  T VA V+ L+EI+WLLPG I DDVRR++ H VC+   GD  LV ++E RHIAMREASL A+A     D   D+P G+  L
Sbjct:    2 DAVIRVDRASNKGSVTDVAKLVLKCDDEEAEKAVRKLLGATSDTDRDFLRVQINNRGRLTLVAGVNMLVEIVWLLPGVIADDVRRDISHKVCKALGGDTRLVEESETRHIAMREASLHANASKVATDQSRDIPPGYSFL 140
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BLAST of mRNA_S-dermatodea_contig9377.17413.1 vs. uniprot
Match: D8LP49_ECTSI (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP49_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 2.220e-36
Identity = 82/231 (35.50%), Postives = 124/231 (53.68%), Query Frame = 1 
Query:   16 SLDNATIRVDHISKRASLVDVAKMVLDCGEDQAKAALNKLLGPTADADEDCPRLQVNNRGGFTQVANVDFLIEIIWLLPGAIPDDVRREMCHAVCRLCEGDASLVTDTEARHIAMREASLRAHAQ-----GGEK-----DDMPAGFELLGVQDQQELAKEMVRQFLKGGDQDLRRKALELEERKISLKRKRCDTVIYMYRSLEELDITLDSRAQVHILDTIAQITKPDGSE 678
            S+D ATIR D  +K+ S++D  +MVL C    A  A  +LL    +    C R ++N +G  T VA+   LIEI+WLLPG      RR+    VCRL  GD SLV++ EARH  ++        Q     G E+     D MPAGF+ L   D+ ++AK M+ Q LK GDQ              +LKRKR D +++ YR+++++ + LD R  + + D++  +++ +  E
Sbjct:    6 SMDGATIRADKQTKKGSVMDTIRMVLRCDSSNANTAFGRLLQAHPELGSRCTRSKLNGKGNETPVADAKTLIEIVWLLPGKKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLHGREEAVETFDGMPAGFKYLSETDRAQVAKRMIDQQLKAGDQ--------------ALKRKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSVTILSRQNTVE 222
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9377.17413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2U9_9PHAE1.050e-3852.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP49_ECTSI2.220e-3635.50EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9377contigS-dermatodea_contig9377:781..1467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue5.4e-31
Seed eggNOG ortholog2880.D8LP49
EggNOG OGs2EUDG@1,2SWJG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size687
Cds size687
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925403.8596861-CDS-S-dermatodea_contig9377:780..14671622925403.8596861-CDS-S-dermatodea_contig9377:780..1467Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9377 781..1467 +
1694079910.4279032-CDS-S-dermatodea_contig9377:780..14671694079910.4279032-CDS-S-dermatodea_contig9377:780..1467Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9377 781..1467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9377.17413.1prot_S-dermatodea_contig9377.17413.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9377 781..1467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9377.17413.1

>prot_S-dermatodea_contig9377.17413.1 ID=prot_S-dermatodea_contig9377.17413.1|Name=mRNA_S-dermatodea_contig9377.17413.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=229bp
MATATSLDNATIRVDHISKRASLVDVAKMVLDCGEDQAKAALNKLLGPTA
DADEDCPRLQVNNRGGFTQVANVDFLIEIIWLLPGAIPDDVRREMCHAVC
RLCEGDASLVTDTEARHIAMREASLRAHAQGGEKDDMPAGFELLGVQDQQ
ELAKEMVRQFLKGGDQDLRRKALELEERKISLKRKRCDTVIYMYRSLEEL
DITLDSRAQVHILDTIAQITKPDGSEVV*
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mRNA from alignment at S-dermatodea_contig9377:781..1467+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9377.17413.1 ID=mRNA_S-dermatodea_contig9377.17413.1|Name=mRNA_S-dermatodea_contig9377.17413.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=687bp|location=Sequence derived from alignment at S-dermatodea_contig9377:781..1467+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCACCGCAACGAGCCTCGACAATGCTACCATTCGCGTCGACCATAT
CTCCAAAAGGGCATCGCTGGTAGATGTTGCAAAGATGGTATTGGATTGTG
GCGAAGACCAAGCCAAAGCTGCGCTGAACAAGCTTCTCGGGCCAACCGCT
GACGCCGACGAAGACTGTCCGAGACTTCAAGTCAACAACAGGGGAGGCTT
TACGCAAGTCGCGAACGTTGATTTTCTGATCGAGATCATCTGGTTGCTAC
CGGGCGCAATCCCGGACGACGTTCGCCGGGAGATGTGCCACGCGGTGTGC
CGTTTGTGTGAAGGGGATGCAAGCCTGGTGACCGATACTGAGGCGCGTCA
TATCGCTATGCGAGAGGCGAGCCTACGCGCCCACGCTCAGGGGGGCGAGA
AGGACGACATGCCGGCCGGCTTTGAGCTTTTAGGGGTCCAAGATCAACAA
GAGCTCGCAAAGGAAATGGTGCGACAGTTCCTCAAGGGCGGGGATCAAGA
CCTCCGGCGGAAGGCCCTCGAACTTGAAGAACGGAAGATCTCGCTAAAAC
GCAAACGCTGTGACACCGTTATCTACATGTACCGATCCTTAGAGGAGCTT
GATATCACGCTCGATTCGCGCGCTCAAGTTCACATCTTGGACACGATAGC
CCAAATCACCAAACCAGACGGTAGCGAGGTGGTGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9377:781..1467+

>mRNA_S-dermatodea_contig9377.17413.1 ID=mRNA_S-dermatodea_contig9377.17413.1|Name=mRNA_S-dermatodea_contig9377.17413.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at S-dermatodea_contig9377:781..1467+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCACCGCAACGAGCCTCGACAATGCTACCATTCGCGTCGACCATAT
CTCCAAAAGGGCATCGCTGGTAGATGTTGCAAAGATGGTATTGGATTGTG
GCGAAGACCAAGCCAAAGCTGCGCTGAACAAGCTTCTCGGGCCAACCGCT
GACGCCGACGAAGACTGTCCGAGACTTCAAGTCAACAACAGGGGAGGCTT
TACGCAAGTCGCGAACGTTGATTTTCTGATCGAGATCATCTGGTTGCTAC
CGGGCGCAATCCCGGACGACGTTCGCCGGGAGATGTGCCACGCGGTGTGC
CGTTTGTGTGAAGGGGATGCAAGCCTGGTGACCGATACTGAGGCGCGTCA
TATCGCTATGCGAGAGGCGAGCCTACGCGCCCACGCTCAGGGGGGCGAGA
AGGACGACATGCCGGCCGGCTTTGAGCTTTTAGGGGTCCAAGATCAACAA
GAGCTCGCAAAGGAAATGGTGCGACAGTTCCTCAAGGGCGGGGATCAAGA
CCTCCGGCGGAAGGCCCTCGAACTTGAAGAACGGAAGATCTCGCTAAAAC
GCAAACGCTGTGACACCGTTATCTACATGTACCGATCCTTAGAGGAGCTT
GATATCACGCTCGATTCGCGCGCTCAAGTTCACATCTTGGACACGATAGC
CCAAATCACCAAACCAGACGGTAGCGAGGTGGTGTAAATGGCCACCGCAA
CGAGCCTCGACAATGCTACCATTCGCGTCGACCATATCTCCAAAAGGGCA
TCGCTGGTAGATGTTGCAAAGATGGTATTGGATTGTGGCGAAGACCAAGC
CAAAGCTGCGCTGAACAAGCTTCTCGGGCCAACCGCTGACGCCGACGAAG
ACTGTCCGAGACTTCAAGTCAACAACAGGGGAGGCTTTACGCAAGTCGCG
AACGTTGATTTTCTGATCGAGATCATCTGGTTGCTACCGGGCGCAATCCC
GGACGACGTTCGCCGGGAGATGTGCCACGCGGTGTGCCGTTTGTGTGAAG
GGGATGCAAGCCTGGTGACCGATACTGAGGCGCGTCATATCGCTATGCGA
GAGGCGAGCCTACGCGCCCACGCTCAGGGGGGCGAGAAGGACGACATGCC
GGCCGGCTTTGAGCTTTTAGGGGTCCAAGATCAACAAGAGCTCGCAAAGG
AAATGGTGCGACAGTTCCTCAAGGGCGGGGATCAAGACCTCCGGCGGAAG
GCCCTCGAACTTGAAGAACGGAAGATCTCGCTAAAACGCAAACGCTGTGA
CACCGTTATCTACATGTACCGATCCTTAGAGGAGCTTGATATCACGCTCG
ATTCGCGCGCTCAAGTTCACATCTTGGACACGATAGCCCAAATCACCAAA
CCAGACGGTAGCGAGGTGGTGTAA
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