mRNA_S-dermatodea_contig937.17409.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig937.17409.1
Unique NamemRNA_S-dermatodea_contig937.17409.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig937.17409.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 2.100e-74
Identity = 155/352 (44.03%), Postives = 207/352 (58.81%), Query Frame = 1 
Query:    1 TVSMTWTNDCDVETFLLKVTTRGEDGSLSVIKSVPCDAGSSSDICLVEVRFAAFSRPSRPPLDLELKEAGEPEVSPVPTDELIGEEPFGSGRRLRRTATAEARVVSQAEAITESDRQLQSTTEITVMFLYSEEARTTLGLISDSQMQTYMAEALTWTNEAMVNSDI-DLQWSLVHVGPLPYTE-------ESDLSVT-EIGVLRNNEDVGNLRDTYGADLVQLIGASYRDFCGYGYYFTGSDTSGFSVSAANCLDGYLHTHEFGHNLGCRHNRESTNSDLEYAHGYRYCDGDDPYRTIMSYT---CG----------TPSANYFSNPDIDYLDKPTGTSTEDNARAIEDAMV 990
            TVSMTWT+ CD+ETFLLK+ +R  DGS S+  SVPC AGSSS+IC+VE++   +       +D   + +     S      ++ E      RR+  T   E    SQ      SDR LQ TT I V+  YS EA ++ G ISD+Q+ T + E +   N+A+ NS I DL++ LVHV  LPY++         D+ +  E+  L  N  V +LR+ Y  DLVQL+G  +   CG GY F G+   GFS+  +NC D + HTHE  HN+GC H+R+++ +  EY HGYRYC G DPYRTIMSY    CG           P  NYFSNP++ YL+KPTGT+T DNAR IE++MV
Sbjct:  241 TVSMTWTDPCDIETFLLKLVSRNSDGSTSIATSVPCSAGSSSEICMVELQKFFYDESDA--VDTS-QSSSSSSTSKYQGSRMLKE------RRVSTTFMEEGSRWSQGIP---SDRSLQGTTVIDVLIFYSPEAASSEG-ISDAQLLTRIVEGMVTLNQAITNSAIADLEYRLVHVAELPYSQMTYDPIDSDDIDLEPELDALAANSAVNDLRNEYQGDLVQLVGY-FPGTCGLGYIFNGNAEFGFSLVGSNCFDNFSHTHEIAHNMGCYHDRDNSETQDEYRHGYRYCTGSDPYRTIMSYYQNGCGGDPTPEADPIVPQVNYFSNPEVTYLNKPTGTATADNARCIEESMV 578
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BLAST of mRNA_S-dermatodea_contig937.17409.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 4.080e-69
Identity = 148/354 (41.81%), Postives = 204/354 (57.63%), Query Frame = 1 
Query:    1 TVSMTWTNDCDVETFLLKVTTRGEDGSLSVIKSVPCDAGSSSDICLVEVRFAAFSRPSRPPLDLELKEAGEPEVSPVPTDELIGEEPFGSG----RRLRRTATAEARVVSQAEAITESDRQLQSTTEITVMFLYSEEARTTLGLISDSQMQTYMAEALTWTNEAMVNSDI-DLQWSLVHVGPLPYTE-----ESDLSVT-EIGVLRNNEDVGNLRDTYGADLVQLIGASYRDFCGYGYYFTGSDTSGFSVSAANCLDGYLHTHEFGHNLGCRHNRESTNSDLEYAHGYRYCDGDDPYRTIMSYT---CG----------TPSANYFSNPDIDYLDKPTGTSTEDNARAIEDAMV 990
            TVSMTWT+ CD E+FLLK+ +R  DGS S+  SVPC AGSS++IC+VE             L++   +  E E +          +  GS     RR+  T T E  + SQ  +   SDR+LQ TT I V+ +YS EA    G I+++Q+ T + E +   N+A+ NS I  L++ LV V  LPY++       D+ +  E+  L  N +V +LR+ Y  DLVQL+G  +   CG GY F G    GFS+  +NC D + HTHE  HN+GC H++ ++++   Y HG+RYC+G DPYRTIMSY    CG           P  NYFSNP++ YL+K TGT+  DNAR IED+MV
Sbjct:   63 TVSMTWTDPCDTESFLLKLVSRNADGSTSIFTSVPCSAGSSNEICMVE-------------LEMFFHDESETEDTXXXXXXXXXXKDQGSRMLKERRVSTTYTEEGSLRSQGMS---SDRRLQGTTVIDVLIVYSPEAAYARG-IAEAQLLTRIVEGMVTLNQAITNSGIAGLEYRLVQVAELPYSQMAYIPSDDIDLKPELDALAANSNVTDLRNQYQGDLVQLVGY-FPGTCGLGYIFNGDAAFGFSLVDSNCFDNFSHTHEIAHNMGCYHDKNNSDTQHAYRHGWRYCEGADPYRTIMSYYHNGCGGDPTSEDDPIVPRVNYFSNPNVTYLNKSTGTAAADNARCIEDSMV 398
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BLAST of mRNA_S-dermatodea_contig937.17409.1 vs. uniprot
Match: D8LMP2_ECTSI (Peptidyl-Asp metallopeptidase. metallo peptidase. MEROPS family M72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP2_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 5.160e-34
Identity = 73/170 (42.94%), Postives = 103/170 (60.59%), Query Frame = 1 
Query:  367 EITVMFLYSEEARTTLGLISDSQMQTYMAEALTWTNEAMVNSDI-DLQWSLVHVGPLPYTE-----ESDLSV-TEIGVLRNNEDVGNLRDTYGADLVQLIGASYRDFCGYGYYFTGSDTSGFSVSAANCLDGYLHTHEFGHNLGCRHNRESTNSDLEYAHGYRYCDGDDP 855
            +I V+  YS EA ++ G ISD+Q+ T + E +   N+A+ NS I DL++ LVHV  LPY++       D+ +  E+  L  + DV +LRD Y  DLVQL+G  +   CG GY F G+   GFS+  +NC D + HTHE  HN+GC H+R ++     + HGYRYC G DP
Sbjct:   12 KIDVLIFYSPEAASSEG-ISDAQLLTRIVEGMVTLNQAITNSAIADLEYRLVHVAELPYSQMTYDPNDDIDLGPELDALAADSDVDDLRDQYQGDLVQLVGY-FPGTCGLGYVFNGNAEYGFSLVGSNCFDNFSHTHEIAHNMGCYHDRLNSGPQDAFRHGYRYCTGTDP 179
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BLAST of mRNA_S-dermatodea_contig937.17409.1 vs. uniprot
Match: D8LLU0_ECTSI (PKD domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU0_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 6.340e-27
Identity = 89/283 (31.45%), Postives = 134/283 (47.35%), Query Frame = 1 
Query:    1 TVSMTWTNDCDVETFLLKVTTRGEDGSLSVIKSVPCDAGSSSDICLVEVRFAAFSRPSRPPLDLELKEAGEPEVSPVPTDELIGEEPFGSGRRLRRTATAEARVVSQAEAITESDRQLQSTTEITVMFLYSEEARTTLGLISDSQMQTYMAEALTWTNEAMVNSDIDLQWSLVHVGPLPYTEESDLSVTEIGVLRNNEDVGNLRDTYGADLVQLIGASYRDFCGYGYYFTGSDTSGFSVSAANCLDGYLHTHEFGHNLGCRHNRESTNSDLE-YAHGYRYCDG 846
            TVSMTWTN C VE+FLL V +   DGS S+++S+PC AGSSS++C+VE+        S   +D    +  + +   + T E  GE   G   R+ +T  A  + V +                     L+S  +  +  L + +    Y         + M++   D        GP            E+  +  N  V  LRD + ADLV L+G  + + CG G+ F  ++  GFS+  + C   +  THE GHNLGCRH+R+++N+ +  Y HG RYC G
Sbjct:  153 TVSMTWTNPCGVESFLLTVVSHNNDGSTSIVRSIPCAAGSSSEVCMVELAVVFNDGDSA--VDSISADNDDDDFESM-TLENPGESVEGQEGRMLKTIRAPTKSVGKES-------------------LHSRGSPGSRELQAGNTQLPY---------DQMLDDTTDY-------GP------------ELDAMTGNAAVAALRDEHEADLVLLVGY-FPNTCGRGWIFNFNEALGFSLMDSICFSNWTQTHEIGHNLGCRHDRDNSNTGMTAYGHGLRYCTG 384
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BLAST of mRNA_S-dermatodea_contig937.17409.1 vs. uniprot
Match: A0A7S2FPD8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FPD8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 8.410e-25
Identity = 93/252 (36.90%), Postives = 126/252 (50.00%), Query Frame = 1 
Query:  340 SDRQLQSTTE----ITVMFLYSEEARTTLGLISDSQMQTYMAE----------------ALTWTNEAMVNSDIDLQWSLVHVG-PLPYTEES----DLSVTEIGVLRNNE----DVGNLRDTYGADLVQLIGASYRDFCGYGYYFTGSDTSGFSVSAANCLDGYLHT-HEFGHNLGCRHNRESTN-SDLEYAHGYRYCDGDDPYRTIMSYTCGT--PSANYFSNPDI--DYLDKPTGTSTEDNARAIEDAMV 990
            SDR+L  TTE    I VM +Y     TT  + SD+  ++Y  +                A++ TN A V S +D Q +LVH      Y E+S    D S     V  +N+    +V NLRD YGADLV ++  S   +CG  + ++G++ +GFSV+A  C  GY    HE GHN+GC H+R ++   D    + Y Y D D  +RTI+ Y C T  P    FSN +   DY     GT  EDNAR I D  V
Sbjct:  166 SDRKLTETTEEGGIIDVMVVY-----TTFAMCSDAG-ESYPCDTTSEANHLNILDRIDLAISETNTAFVLSGVDTQLNLVHAYMDESYNEDSAASGDFSTMLSHVTNDNDGYVDEVHNLRDEYGADLVAMV-VSASAYCGMAWMYSGNEANGFSVTAYGCATGYYSFGHEIGHNMGCNHDRVTSGVGDNTDGYAYGYWDPDYNFRTILGYDCPTSCPRIQRFSNSNTSYDYDGSIIGTEIEDNARQINDVRV 410
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BLAST of mRNA_S-dermatodea_contig937.17409.1 vs. uniprot
Match: A0A7V8WHT4_9BACT (BACON domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V8WHT4_9BACT)

HSP 1 Score: 112 bits (280), Expect = 7.230e-24
Identity = 76/224 (33.93%), Postives = 113/224 (50.45%), Query Frame = 1 
Query:  340 SDRQLQSTTEITVMFLYSEEARTTLGLISDSQMQTYMAEALTWTNEAMVNSDIDLQWSLVHVGPLPYTEESDLSVTEIGVLRNNED-----VGNLRDTYGADLVQLIGASYR--DFCGYGYYFTGSDT----SGFSVSAANCLDGYL-HTHEFGHNLGCRHNRESTNSDLEYAHGYRYCDGDDPYRTIMSYTCGTPSANYFSNPDIDYLDKPTGTSTEDNARAI 975
            SD    +  +I VM +++  AR  +G  + + +Q+ +  A+   N +  NS I     LV+ G + + E      T++       D     V  LR+ Y AD+V LIG+ Y    +CG GY  +   T    S F+V   +C  GYL + HE GHN G  H+  +  S   Y + Y + D    +RT+MSY  G      FSNP++ Y D+PTGTS +DNARA+
Sbjct:  167 SDAAADTAGQIDVMVVWTPAARNAVGGTT-AAIQSVVDLAVANANVSYSNSQIATSLRLVYSGEVSFAETPSSISTDLSRFSGASDGYIDQVHTLRNQYAADIVTLIGSGYAAAGYCGVGYLMSSVSTNFASSAFNVVDQSCAGGYLSYAHEVGHNQGLHHDPANAGSTPSYPYAYGFQDPSGAFRTVMSYG-GATRVQQFSNPNVLYADRPTGTSAQDNARAL 388
[Close]
BLAST of mRNA_S-dermatodea_contig937.17409.1 vs. uniprot
Match: A0A7X0NIV5_9GAMM (PPC domain-containing protein n=1 Tax=Thalassotalea piscium TaxID=1230533 RepID=A0A7X0NIV5_9GAMM)

HSP 1 Score: 111 bits (277), Expect = 2.160e-23
Identity = 73/215 (33.95%), Postives = 119/215 (55.35%), Query Frame = 1 
Query:  367 EITVMFLYSEEARTTLGLISDSQMQTYMAEALTWTNEAMVNSDIDLQWSLVHVGPLPYTEESDLSVTEIGVLRNNEDVGNLRDTYGADLVQLIGASYRDFCGYGYYFTGSDTS----GFSVSAANCLDGYLHTHEFGHNLGCRH---NRESTNSDLEYAHGYRYCDGDDPYRTIMSY--TCG-TPSANYFSNPDIDYLDKPTGTSTEDNARAIED 981
            ++ VM LY+  AR  +G    S MQ    +++   N ++ NS+++   +LV+   + Y E  + S T++  + +N  VG LR+TYGADLV +I  +  + CG G+Y +   T+    GF V+  NC+ G+  +HEFGHN+G +H   N   T    +Y +G+   +      TIM+Y  +C   P+ N FSNP++ Y    TG++  +NAR + D
Sbjct:  204 QVDVMLLYTGAAR--VGAGGTSYMQALAQQSIDQMNLSLENSEVNAWVNLVYANEISYQETGNGS-TDLNWVTSNAYVGQLRNTYGADLVGMIIENPGNLCGLGWYMSTPSTNFASRGFQVTRRNCVGGWTISHEFGHNMGLQHDERNAGGTPGPYQYNYGHLLANNT---HTIMAYGSSCNWCPAINNFSNPNVYYNGYATGSAYHNNARRLND 412
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BLAST of mRNA_S-dermatodea_contig937.17409.1 vs. uniprot
Match: A0A835YSD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD2_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.700e-23
Identity = 67/200 (33.50%), Postives = 104/200 (52.00%), Query Frame = 1 
Query:  430 SQMQTYMAEALTWTNEAMVNSDIDLQWSLVHVGPLPYTEESDLSVTEIGVLRNNEDVGNLRDTYGADLVQLIGASYRDFCGYGYYFTGSDTS----GFSVSAANCLDGYLHTHEFGHNLGCRHN------RESTNSDLEYAHGYRYCDGDDPYRTIMSYTCGTPSAN---YFSNPDIDYLDKPTGTSTEDNARAIEDAMV 990
            SQ+ +  A  +T  N+ +VNS +  Q+ LV++    Y + +    T   +      V   R+TYGADL+Q++      +CG G+  T    S    G S    +C     H HE GHN+GC H+        +  S   Y+ GYRYC   + +RT+M+Y C + SA+   YFS+P++ Y+  PTGT  EDN R ++D+ +
Sbjct:  363 SQVPSMAAAGVTSANQVLVNSGVGFQFQLVNLMYSNYADNNMDQATTDMLAGTVPGVAAARNTYGADLIQMM-TEDTAYCGLGWLMTDKSPSFEKYGNSAVFNDCFMNLSHIHEIGHNMGCHHDIGTDGANAAAGSLWPYSFGYRYCSAPN-FRTVMAYACTSGSASRMPYFSSPNVYYMGYPTGTDIEDNVRTLKDSKL 560
[Close]
BLAST of mRNA_S-dermatodea_contig937.17409.1 vs. uniprot
Match: A0A2V8SWR0_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8SWR0_9BACT)

HSP 1 Score: 109 bits (273), Expect = 4.150e-23
Identity = 79/218 (36.24%), Postives = 113/218 (51.83%), Query Frame = 1 
Query:  352 LQSTTEITVMFLYSEEARTTLGLISDSQMQTYMAEALTWTNEAMVNSDIDLQWSLVHVGPLPYTEESDLSVTEIGVLRNNEDVGNLRDTYGADLVQLIGASYRDFCGYGYYF---TGSDTSGFSVSAANCLDGYLH-THEFGHNLGCRHNRES-TNSDLEYAHGYRYCDGDDPYRTIMSY----TCGTPSANYFSNPDIDYLDKPTG-TSTEDNARAI 975
            + S   I V+ +Y+   +T LG   D+Q Q     A+   N A +NS I  +  LVH     YTE      T++  LR N  +G LR+T+ ADLV  I +     CG GY     +G+  + F+V+  +C  G L   HE GHN+G +HN E+ +N    Y  G+     +  YRT+M+Y    T G     YFSNP++ YL+ PTG  +  DNAR+I
Sbjct:  179 VDSADRIDVLIVYTTATKTFLG--GDAQAQALAQSAVDAANTAYLNSRIRQRLRLVHSQEFAYTEID--PSTDLSNLRANATIGALRNTHNADLVSEI-SEVTGVCGIGYLMGVPSGNQNNAFTVTVRSCAVGNLSFAHELGHNMGSQHNPENGSNPTFPYGFGHNV---NGSYRTVMAYVDPCTSGCTRVPYFSNPNVIYLNTPTGINNARDNARSI 388
[Close]
BLAST of mRNA_S-dermatodea_contig937.17409.1 vs. uniprot
Match: UPI001AF679C6 (M12 family metallo-peptidase n=1 Tax=Luteitalea sp. TBR-22 TaxID=2802971 RepID=UPI001AF679C6)

HSP 1 Score: 105 bits (261), Expect = 1.720e-21
Identity = 78/219 (35.62%), Postives = 115/219 (52.51%), Query Frame = 1 
Query:  364 TEITVMFLYSEEARTTLGLISDSQMQTYMAEALTWTNEAMVNSDIDLQWSLVHVGPLPYTEESDLSVTEIGVLRNNED-----VGNLRDTYGADLVQLIGA-SYRDFCGYGYYFTGSDTSGFSVSAANCLD-----GYL-HTHEFGHNLGCRHNRESTNS---DLEYAHGYRYCDGDDPYRTIMSYTCGTPSANYFSNPDIDYLDKPTGTSTEDNARAI 975
            T+I VM +++  + T  G    + M +     +   N+  VNS ++++ +L + GP+ +TE +  S T++  LR+  D     +  LRDTY AD+V ++G  S    CGYGY  T   +S F+ SA N +D     G L + HE GHN G  HNR           YA+GY+  D    +RT++SY        Y S+P   Y  +PTGTSTEDNAR +
Sbjct:  178 TDIAVMIVWTPRSETAGG--GRAAMDSLALNLVANANQVYVNSGVNVRLTLAYAGPISFTETTSAS-TDVASLRSPTDGKADGIHALRDTYAADIVTMLGEYSGTGSCGYGYIMTPLSSS-FASSAFNVVDRGCSLGNLSYAHEVGHNQGMLHNRADAGGLTPSQPYAYGYQ--DPSGAFRTVLSYG-SMVRIPYLSSPLTTYGGRPTGTSTEDNARTL 389
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig937.17409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF50_9PHAE2.100e-7444.03LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5JRC1_9PHAE4.080e-6941.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMP2_ECTSI5.160e-3442.94Peptidyl-Asp metallopeptidase. metallo peptidase. ... [more]
D8LLU0_ECTSI6.340e-2731.45PKD domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S2FPD8_9STRA8.410e-2536.90Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7V8WHT4_9BACT7.230e-2433.93BACON domain-containing protein n=1 Tax=Acidobacte... [more]
A0A7X0NIV5_9GAMM2.160e-2333.95PPC domain-containing protein n=1 Tax=Thalassotale... [more]
A0A835YSD2_9STRA3.700e-2333.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2V8SWR0_9BACT4.150e-2336.24Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
UPI001AF679C61.720e-2135.62M12 family metallo-peptidase n=1 Tax=Luteitalea sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig937contigS-dermatodea_contig937:154..4903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue1.1e-32
Seed eggNOG ortholog2880.D8LC56
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs2E79G@1,2SDWE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons8
Model size990
Cds size981
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925403.5239875-UTR-S-dermatodea_contig937:153..1621622925403.5239875-UTR-S-dermatodea_contig937:153..162Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig937 154..162 +
1694079910.1583881-UTR-S-dermatodea_contig937:153..1621694079910.1583881-UTR-S-dermatodea_contig937:153..162Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig937 154..162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925403.5334692-CDS-S-dermatodea_contig937:162..1921622925403.5334692-CDS-S-dermatodea_contig937:162..192Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 163..192 +
1694079910.1706967-CDS-S-dermatodea_contig937:162..1921694079910.1706967-CDS-S-dermatodea_contig937:162..192Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 163..192 +
1622925403.5427723-CDS-S-dermatodea_contig937:1125..12691622925403.5427723-CDS-S-dermatodea_contig937:1125..1269Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 1126..1269 +
1694079910.18241-CDS-S-dermatodea_contig937:1125..12691694079910.18241-CDS-S-dermatodea_contig937:1125..1269Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 1126..1269 +
1622925403.552281-CDS-S-dermatodea_contig937:2180..23661622925403.552281-CDS-S-dermatodea_contig937:2180..2366Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 2181..2366 +
1694079910.1934485-CDS-S-dermatodea_contig937:2180..23661694079910.1934485-CDS-S-dermatodea_contig937:2180..2366Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 2181..2366 +
1622925403.5629783-CDS-S-dermatodea_contig937:2555..27171622925403.5629783-CDS-S-dermatodea_contig937:2555..2717Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 2556..2717 +
1694079910.204388-CDS-S-dermatodea_contig937:2555..27171694079910.204388-CDS-S-dermatodea_contig937:2555..2717Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 2556..2717 +
1622925403.573343-CDS-S-dermatodea_contig937:3320..34661622925403.573343-CDS-S-dermatodea_contig937:3320..3466Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 3321..3466 +
1694079910.217153-CDS-S-dermatodea_contig937:3320..34661694079910.217153-CDS-S-dermatodea_contig937:3320..3466Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 3321..3466 +
1622925403.5846028-CDS-S-dermatodea_contig937:3906..40051622925403.5846028-CDS-S-dermatodea_contig937:3906..4005Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 3907..4005 +
1694079910.230169-CDS-S-dermatodea_contig937:3906..40051694079910.230169-CDS-S-dermatodea_contig937:3906..4005Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 3907..4005 +
1622925403.5953355-CDS-S-dermatodea_contig937:4449..45271622925403.5953355-CDS-S-dermatodea_contig937:4449..4527Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 4450..4527 +
1694079910.2473946-CDS-S-dermatodea_contig937:4449..45271694079910.2473946-CDS-S-dermatodea_contig937:4449..4527Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 4450..4527 +
1622925403.6093256-CDS-S-dermatodea_contig937:4767..49031622925403.6093256-CDS-S-dermatodea_contig937:4767..4903Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 4768..4903 +
1694079910.262607-CDS-S-dermatodea_contig937:4767..49031694079910.262607-CDS-S-dermatodea_contig937:4767..4903Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 4768..4903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig937.17409.1prot_S-dermatodea_contig937.17409.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig937 163..4903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig937.17409.1

>prot_S-dermatodea_contig937.17409.1 ID=prot_S-dermatodea_contig937.17409.1|Name=mRNA_S-dermatodea_contig937.17409.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=327bp
MTWTNDCDVETFLLKVTTRGEDGSLSVIKSVPCDAGSSSDICLVEVRFAA
FSRPSRPPLDLELKEAGEPEVSPVPTDELIGEEPFGSGRRLRRTATAEAR
VVSQAEAITESDRQLQSTTEITVMFLYSEEARTTLGLISDSQMQTYMAEA
LTWTNEAMVNSDIDLQWSLVHVGPLPYTEESDLSVTEIGVLRNNEDVGNL
RDTYGADLVQLIGASYRDFCGYGYYFTGSDTSGFSVSAANCLDGYLHTHE
FGHNLGCRHNRESTNSDLEYAHGYRYCDGDDPYRTIMSYTCGTPSANYFS
NPDIDYLDKPTGTSTEDNARAIEDAMV
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mRNA from alignment at S-dermatodea_contig937:154..4903+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig937.17409.1 ID=mRNA_S-dermatodea_contig937.17409.1|Name=mRNA_S-dermatodea_contig937.17409.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4750bp|location=Sequence derived from alignment at S-dermatodea_contig937:154..4903+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCGTCAGCATGACGTGGACGAATGACTGCGACGTTGAGGTGCGTACGCG
GTTGTTGCGGTAGATCTGTCCTTTTGTTTTCGTCATTTCGAAGAACCACT
CCAGCCATCTTGCGAGCTCGCGGTCACAAGGTATAATCCGTTCCGTCCCA
TTCCTTCCTTACGTTAACCTTCCTTTTTTTTTTCCCGTGCGGCCAGCCAT
ACCTGTCAACTGGCTTCTTTTTCTTGGGGGCTTTCTTGGGCACGCTCTCG
CGGTTTTCTAAACGGAGAATGCGTGCGACAACAAGACATAATAATATCAT
ATGGAATTCTATCCCACGACCCTGTGCCGCCGGGGCGTTGGCAACCGGGC
GAATGGTTGGATGTTTTTGTTTAATATGAACGTAGAATATGAACAGGCAT
GTTTCTTTTTGTTTTCTTTTTGCATACAGTAACGTACACTGTTCTCCCAG
CGTTGACGGATGTTCCCCGCACAAAGTTTGAACATGCACATGTCGACACA
CGGAGGATGGGGTTGTATGTACGTTTCGTCACACTGGCTCGCGTCGATAG
CGCTACACGTGTCAACCCTTTGGCAAGGGCCTCCCTTGCCTGCCATAGAC
ATATGCCCATAAAACGTCTACAACACACATTTTGGTCTCACTCCGCTCTC
TGTGATATTTCGTGCACATACAACGTGGACCGAAGACGTCAAGAATGCAA
AGTGTTGCCCCTTTGGTGACCACCTTAATGTACTTGTTGACTGTCGTGTC
AAATTAATGTGAAAGAGCTGCCCGACGGTGGACCGAGAGACCCGGTCGAA
TAGCCCGCCGAAGTCCACTCGATTTCCCCAACACCCATGGTGTAGCTTAA
TACCGAGGCAAGACCCACCATGGGATTGGTAGGGAAACTAAAGCGCGTTA
TAAGGTACACAGGCAAGTGTTCTTCCTCCATGTTCAGTTGCTTGCACGTT
CTTGCGCGAATTTTCTTGTCAGACCTTCTTGCTGAAGGTGACCACGAGGG
GCGAGGACGGGTCGCTGTCCGTCATCAAATCCGTCCCCTGCGACGCAGGT
TCCAGTTCCGATATTTGCTTGGTCGAGGTGAGGTTTGCTGCATTTTCCCG
TCCCTCTCGGCCCCCCGTCTCTCGAAATTTCCAGCCCATGGCATGGAGGG
CGAGTAGGAGGACTACGCGTAGACGATTAACATCGGAGCGCTGTCGAGCG
TCGAACGGCCGCGAAGTTGATTAGTTGTCTTGGTGGGGAGTTAGTTCGAG
ACAAATGAAATCGACTAAGTCGAGGCCGCGAGCAAGCGAAACCAATACGG
GGTTATCATGCACAGCCGAAAGTAAGTGCTGCGGGGCGGGTCTGTTGCCG
AGGTCTGCCCTCACCTATCCATTGTGGCGGTGCTAGTCGGGTTTCAGGAA
ATGCAAAGTGGGGTCTCTGAGCTAGCCGTTCTTTAGGGTATGACTACGCC
ATATCCCGATGGGAGAAACCGACCTGAACCGGCTCGTACCACGAGTTCGG
CCGCGACACCTAACACGTTACTTGCAGATGCTCTCATGGTGGCACGTTCC
TGCATCAAAACAAATTTGTCTTGACGTCGTGGTACTGCTAGTCGGGGTCA
GGCCATAGCAAATCAAATTTAAAGCTACCGCCCCCGCCCGCCCGGTAGAC
TTGCAGGAGCGAAGAGTTTTTATGTTCGCACTGCACTGGACGGCGTGCGG
GTTTTGTCTCTGTCCATGTCTGGACGTCACTTTATTTTTCGGTGTAGGGG
TGCTGGATTTCCTTTGCTCTTGTGCCTTCATGTGACCATGAGCGGGATCA
GCATCTACCTTTGCAATTGCGAAAATGACGGGCCGGTCGGTTAGATGTGT
GACAATCGATCACATGAATCAAATTAAAAACCAACTATAGGTAGGAGAGT
GGCTACGTATACTTCGCTCGCGCCCTCGCGACGATGAAGGAAGCGCAACT
TTGGCCGTGTATCTGGACGCATGCGATTTTTCCTGCTTATTCGGTAACTC
GTGAACACCATTCGAAAACCCTCGCAGCTCGACCTCGAATTGAAAGAAGC
GGGGGAGCCGGAGGTGTCGCCAGTTCCGACCGACGAGTTGATCGGAGAGG
AACCATTCGGGAGCGGCCGCCGCTTGCGCAGAACAGCCACGGCCGAGGCT
AGGGTTGTGTCTCAAGCGGAGGCTATCACAGAAAGCGATCGCCAACTGCA
GTCTACTACCGAGGTACTGTGCGTATAAATAATTTTGTGCACACGTGTGT
AAAACTCGTTTGTTTTGGAATACCTGCCCTTCCCCGTCGACCTCATGAGG
TTTGCTACTGTCGGAAAGGATGCAGAACACCAATTGTTCATTGCTCGCTA
GAGCGATTCGGTCCACCATCCTCCGCGTCCACGTCGTGCCATCTCTCTGC
AGATTACGGTGATGTTCCTGTACAGTGAGGAGGCCCGAACCACTCTTGGA
CTCATCAGTGATTCCCAGATGCAAACGTACATGGCGGAGGCTCTGACATG
GACGAACGAGGCCATGGTGAACTCGGACATCGACCTCCAATGGTCTCTTG
TTCACGTTGGTCCGGTAAGCTTGGTGTTTTCGTGATTGGATTGGTTTGCC
CCGACATACGGCGGAAACACAAACCTTCCTATGCTTGTCGCCCGTCCTTC
TGCGACTCCGCGACCCTTCTTGATTTTCGCCGAAGGTGTATGCGTTTGTT
GTGTCTCAGTGGTGGACGACACCCACCAAGAGAGTGACACCCACTTCAGA
GCGAACTTATCCAAGCGAATTTGGGTCTATACGGCTGGTCATGCCGAGGG
GCCAGAGGGTCTGGAAGCGGGCGAAGATGCCCAAGAACGTTGGGGTTGAG
CCTGGTCGGTGGATTAACGAGGAATTCGGCGATACGCATTTTCGACGAAG
CTTCGTGAGAGGATAAAGAGCAATTTGATTGAATTTCAAACATTCGGCGC
TGTGCGCGACATGCTCATCGACGCGATGGTCGCCGGGTTTGATGGCGGCA
AGCCCCCCGCACTACGGTGAGGCATTATGTATTGTCGACTGTTCGCGGGG
GAAATGAACCCCCCCCCCCCCCAAGGGTCGCTTGCTGCTTGTGCTTTGCG
CACAGGTCTACCACTGTTTTGTTCCTCCTCTGCCACCTCTTTTGCACCGT
TCTGCTTTCTTTTTCAGCTGCCATACACCGAAGAGAGCGACCTCTCTGTG
ACCGAGATTGGTGTCCTTCGGAACAACGAGGACGTTGGGAATCTTCGAGA
CACTTACGGAGCGGACCTTGTCCAGCTCATCGGAGCATCCTACCGCGATT
TTTGCGGATACGGGTGCGTTATCGATCAGCCACAAACTTGGAACCTGGCC
GAAGGGTCGTCCGCCTTGCGGGGTCTTGATAATTTATATGCTTACACTCG
TCAGAGAAAGTTCAAGGGGAAACCAAATGGATATGTGACAGTATTACATG
AACCCGACGCCTTCTGATGTGGCTGTATGAGTTTTTTTGCCGGGTCCGTT
CAACATAGTGGGGGTATCAACACAGAGCGCAATTCCTGATGCACTGAGGA
GCGCAGCTGGAGCAGTAACGTTTCCTAAGAGCTCGAAGTGTTGTCAAACA
TGAACATCGAAAGAACGCGCTCGAACCGCAGGGCTGCATCAGAAAGGCCA
CGAGTTATCTGGTGTCGTCTTCCTATTCATCTGAAGAATTGGCTATGAAT
GAGCTTAAACATGCCTGTTCTACTTTTCATTATTATTTTTCGGCCACGTG
CAGGTACTATTTCACGGGTAGCGACACTTCGGGTTTCAGCGTGTCGGCTG
CAAACTGCCTGGACGGCTACCTCCACACTCACGAGTTTGGCCACAATTTG
GGGTACGTGGTGATGCCGGCTTTCCAGATAGCAGCGCTTTTTACATAGTT
TTCTCTACCGTCCAATGATTTTCAAGGTAGCTGGATCTATTGCATCACAC
CTTCCTGACGCGCCCTTTCTAAATAAATGGATGCGCTTTGGATGTGATGA
CAGCGACTTCAAACCGCCGCATCAAAACGTCCGTTCGATGCTGTTTTCGC
AGTACGAACACAACTAACGTTTTCTACAAGGCCATCTATTACTTGTTGAT
GTTGATGCATCTTTTTCAGAAGAGTTGGAAATTGGCACCCACATGCGAGG
GGGTTCAATTTGTGTCTCGATGGCACCCCTCTTGATCTGTGATTACACGA
TTGTGCCGACGTCAGCCGTCCGCCTGGCTACGCTCGCGCCTCCATGAAAA
ACCTCTTCCAACCCCCCACCGAATGCAAACACGGTACCGTGTACAGGTGC
AGGCACAACCGAGAGAGTACTAACTCTGACCTGGAGTACGCGCACGGGTA
CCGGTACTGCGACGGTGATGACCCGTGAGTCCCTTCTAAACATTGTGTCT
CGGAACCGTAGACGCATATGCCTGATCAGAATGAAAGAGGGCGTGCAAGA
TAAGCGGTGGTTGTATGCATGCTCCGCAGCAATGGAGAGTCGGGCAGGGG
CGGGGATTAGAGGACGGAGCGTGGGTGTCTACGGCCACGATATGCTTCCG
CTACCCTGTTTATGCCTTTGCCGGGGCATTTTGTGACCACCGCTCACACC
ACCACCCACCGCAGGTACCGCACCATTATGAGCTACACGTGCGGCACCCC
CTCTGCTAACTACTTCTCTAATCCGGACATTGACTACCTCGACAAGCCCA
CCGGTACGAGCACGGAGGACAACGCTCGCGCCATCGAAGACGCCATGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig937:154..4903+

>mRNA_S-dermatodea_contig937.17409.1 ID=mRNA_S-dermatodea_contig937.17409.1|Name=mRNA_S-dermatodea_contig937.17409.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1962bp|location=Sequence derived from alignment at S-dermatodea_contig937:154..4903+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGTGGACGAATGACTGCGACGTTGAGATGACGTGGACGAATGACTG
CGACGTTGAGACCTTCTTGCTGAAGGTGACCACGAGGGGCGAGGACGGGT
CGCTGTCCGTCATCAAATCCGTCCCCTGCGACGCAGGTTCCAGTTCCGAT
ATTTGCTTGGTCGAGGTGAGGTTTGCTGCATTTTCCCGTCCCTCTCGGCC
CCCCACCTTCTTGCTGAAGGTGACCACGAGGGGCGAGGACGGGTCGCTGT
CCGTCATCAAATCCGTCCCCTGCGACGCAGGTTCCAGTTCCGATATTTGC
TTGGTCGAGGTGAGGTTTGCTGCATTTTCCCGTCCCTCTCGGCCCCCCCT
CGACCTCGAATTGAAAGAAGCGGGGGAGCCGGAGGTGTCGCCAGTTCCGA
CCGACGAGTTGATCGGAGAGGAACCATTCGGGAGCGGCCGCCGCTTGCGC
AGAACAGCCACGGCCGAGGCTAGGGTTGTGTCTCAAGCGGAGGCTATCAC
AGAAAGCGATCGCCAACTGCAGTCTACTACCGAGCTCGACCTCGAATTGA
AAGAAGCGGGGGAGCCGGAGGTGTCGCCAGTTCCGACCGACGAGTTGATC
GGAGAGGAACCATTCGGGAGCGGCCGCCGCTTGCGCAGAACAGCCACGGC
CGAGGCTAGGGTTGTGTCTCAAGCGGAGGCTATCACAGAAAGCGATCGCC
AACTGCAGTCTACTACCGAGATTACGGTGATGTTCCTGTACAGTGAGGAG
GCCCGAACCACTCTTGGACTCATCAGTGATTCCCAGATGCAAACGTACAT
GGCGGAGGCTCTGACATGGACGAACGAGGCCATGGTGAACTCGGACATCG
ACCTCCAATGGTCTCTTGTTCACGTTGGTCCGATTACGGTGATGTTCCTG
TACAGTGAGGAGGCCCGAACCACTCTTGGACTCATCAGTGATTCCCAGAT
GCAAACGTACATGGCGGAGGCTCTGACATGGACGAACGAGGCCATGGTGA
ACTCGGACATCGACCTCCAATGGTCTCTTGTTCACGTTGGTCCGCTGCCA
TACACCGAAGAGAGCGACCTCTCTGTGACCGAGATTGGTGTCCTTCGGAA
CAACGAGGACGTTGGGAATCTTCGAGACACTTACGGAGCGGACCTTGTCC
AGCTCATCGGAGCATCCTACCGCGATTTTTGCGGATACGGCTGCCATACA
CCGAAGAGAGCGACCTCTCTGTGACCGAGATTGGTGTCCTTCGGAACAAC
GAGGACGTTGGGAATCTTCGAGACACTTACGGAGCGGACCTTGTCCAGCT
CATCGGAGCATCCTACCGCGATTTTTGCGGATACGGGTACTATTTCACGG
GTAGCGACACTTCGGGTTTCAGCGTGTCGGCTGCAAACTGCCTGGACGGC
TACCTCCACACTCACGAGTTTGGCCACAATTTGGGGTACTATTTCACGGG
TAGCGACACTTCGGGTTTCAGCGTGTCGGCTGCAAACTGCCTGGACGGCT
ACCTCCACACTCACGAGTTTGGCCACAATTTGGGGTGCAGGCACAACCGA
GAGAGTACTAACTCTGACCTGGAGTACGCGCACGGGTACCGGTACTGCGA
CGGTGATGACCCGTGCAGGCACAACCGAGAGAGTACTAACTCTGACCTGG
AGTACGCGCACGGGTACCGGTACTGCGACGGTGATGACCCGTACCGCACC
ATTATGAGCTACACGTGCGGCACCCCCTCTGCTAACTACTTCTCTAATCC
GGACATTGACTACCTCGACAAGCCCACCGGTACGAGCACGGAGGACAACG
CTCGCGCCATCGAAGACGCCATGGTGGTACCGCACCATTATGAGCTACAC
GTGCGGCACCCCCTCTGCTAACTACTTCTCTAATCCGGACATTGACTACC
TCGACAAGCCCACCGGTACGAGCACGGAGGACAACGCTCGCGCCATCGAA
GACGCCATGGTG
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