mRNA_S-dermatodea_contig93630.17406.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig93630.17406.1
Unique NamemRNA_S-dermatodea_contig93630.17406.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.210e-14
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    4 SFSELVEDVPIDGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCHSL 177
            SF  LVE V ID IV+V+YK  P + KVGH+V+VGPGGF+LC+CL+LLR GL C H L
Sbjct:  421 SFCRLVECVEIDCIVKVLYKHKPDR-KVGHLVIVGPGGFQLCTCLQLLRRGLQCRHVL 477          
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.650e-14
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    4 SFSELVEDVPIDGIVRVVYKF--SPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCH 171
            SF+ELV +V I+ +V+V YK+  + R+ KV HIVVVGP GF+LC+CLKL+RCGL C H
Sbjct:  466 SFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSH 523          
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.660e-14
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    4 SFSELVEDVPIDGIVRVVYKF--SPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCH 171
            SF+ELV +V I+ +V+V YK+  + R+ KV HIVVVGP GF+LC+CLKL+RCGL C H
Sbjct:  812 SFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSH 869          
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 6.800e-10
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    4 SFSELVEDVPI---DGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCHSL 177
            SF  LV  V I   D +V+VVYK    + KVGH+VV+GP GF+LC+CL+L+R GL C H L
Sbjct: 1246 SFYRLVAHVDIYMGDAVVKVVYK----RRKVGHLVVIGPDGFQLCACLQLMRRGLQCRHVL 1302          
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5KFX3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.230e-9
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    7 FSELVEDVPIDGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCHSL 177
            F+EL+ED  +D +VR+   FS      GH+V +GP GF LC+CL+LL  GL C H L
Sbjct:  367 FAELLEDQVLDKLVRITRSFSDGGPNYGHLVALGPDGFVLCTCLRLLVYGLGCRHGL 423          
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5JYV9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV9_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.230e-9
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    7 FSELVEDVPIDGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCHSL 177
            F+EL+ED  +D +VR+   FS      GH+V +GP GF LC+CL+LL  GL C H L
Sbjct:  418 FAELLEDQVLDKLVRITRSFSDGGPNYGHLVALGPDGFVLCTCLRLLVYGLGCRHGL 474          
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5L2H3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H3_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.390e-9
Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   13 ELVEDVPIDGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCH 171
            +LV  VP+     V YK +P +   GH+VVVGPGGF LCSCLK LR GL C H
Sbjct:  280 DLVSRVPVHLAAAVRYKLTPSR--PGHVVVVGPGGFYLCSCLKFLRHGLPCRH 330          
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5KRH9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 8.260e-9
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   16 LVEDVPIDGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCH 171
            LV  VP+     V YK +P +   GH+VV GPGGF LCSCLKLLR GL C H
Sbjct:  707 LVSRVPVHLSAAVRYKLTPSR--PGHVVVFGPGGFYLCSCLKLLRHGLQCRH 756          
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.930e-8
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   13 ELVEDVPIDGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCH 171
            +L+ ++P+     V YK +P +   GH+VV GP GF LCSCLKLLR GL C H
Sbjct:  323 DLIGELPVHVAAAVRYKLTPAR--PGHVVVFGPNGFHLCSCLKLLRHGLVCRH 373          
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5JZB4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB4_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 5.410e-8
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   13 ELVEDVPIDGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCH 171
            +L   VP+     V YK +P +   GH+VV GPGGF LCSCLKL+R GL C H
Sbjct:  769 DLFSRVPVHLAAAVPYKLTPSR--PGHVVVSGPGGFYLCSCLKLMRHGLPCRH 819          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FLF6_ECTSI1.210e-1463.79Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5JEJ0_9PHAE1.650e-1460.34SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJS4_9PHAE1.660e-1460.34SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE6.800e-1054.10SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KFX3_9PHAE3.230e-949.12SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JYV9_9PHAE3.230e-949.12SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L2H3_9PHAE4.390e-956.60SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KRH9_9PHAE8.260e-957.69SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JY17_9PHAE3.930e-850.94SWIM-type domain-containing protein n=3 Tax=Ectoca... [more]
A0A6H5JZB4_9PHAE5.410e-852.83SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig93630contigS-dermatodea_contig93630:15..191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog2880.D7FLF6
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925403.2851615-CDS-S-dermatodea_contig93630:14..1911622925403.2851615-CDS-S-dermatodea_contig93630:14..191Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93630 15..191 +
1694079909.983796-CDS-S-dermatodea_contig93630:14..1911694079909.983796-CDS-S-dermatodea_contig93630:14..191Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93630 15..191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig93630.17406.1prot_S-dermatodea_contig93630.17406.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig93630 15..191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig93630.17406.1

>prot_S-dermatodea_contig93630.17406.1 ID=prot_S-dermatodea_contig93630.17406.1|Name=mRNA_S-dermatodea_contig93630.17406.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=59bp
LSFSELVEDVPIDGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLR
CGLHCCHSL
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mRNA from alignment at S-dermatodea_contig93630:15..191+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig93630.17406.1 ID=mRNA_S-dermatodea_contig93630.17406.1|Name=mRNA_S-dermatodea_contig93630.17406.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at S-dermatodea_contig93630:15..191+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGTCTTTCTCTGAACTGGTGGAGGACGTACCCATTGATGGAATTGTTCG AGTAGTGTACAAATTCAGCCCCCGTAAGATTAAAGTTGGTCACATTGTAG TGGTCGGGCCCGGTGGGTTTGAACTGTGTAGTTGCCTGAAACTTTTGAGG TGTGGCCTGCACTGTTGCCACAGTTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig93630:15..191+

>mRNA_S-dermatodea_contig93630.17406.1 ID=mRNA_S-dermatodea_contig93630.17406.1|Name=mRNA_S-dermatodea_contig93630.17406.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at S-dermatodea_contig93630:15..191+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGTCTTTCTCTGAACTGGTGGAGGACGTACCCATTGATGGAATTGTTCG
AGTAGTGTACAAATTCAGCCCCCGTAAGATTAAAGTTGGTCACATTGTAG
TGGTCGGGCCCGGTGGGTTTGAACTGTGTAGTTGCCTGAAACTTTTGAGG
TGTGGCCTGCACTGTTGCCACAGTTTGCTGTCTTTCTCTGAACTGGTGGA
GGACGTACCCATTGATGGAATTGTTCGAGTAGTGTACAAATTCAGCCCCC
GTAAGATTAAAGTTGGTCACATTGTAGTGGTCGGGCCCGGTGGGTTTGAA
CTGTGTAGTTGCCTGAAACTTTTGAGGTGTGGCCTGCACTGTTGCCACAG
TTTG
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