mRNA_S-dermatodea_contig93630.17406.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 1.210e-14 Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1
Query: 4 SFSELVEDVPIDGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCHSL 177
SF LVE V ID IV+V+YK P + KVGH+V+VGPGGF+LC+CL+LLR GL C H L
Sbjct: 421 SFCRLVECVEIDCIVKVLYKHKPDR-KVGHLVIVGPGGFQLCTCLQLLRRGLQCRHVL 477
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 1.650e-14 Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 4 SFSELVEDVPIDGIVRVVYKF--SPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCH 171
SF+ELV +V I+ +V+V YK+ + R+ KV HIVVVGP GF+LC+CLKL+RCGL C H
Sbjct: 466 SFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSH 523
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 1.660e-14 Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 4 SFSELVEDVPIDGIVRVVYKF--SPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCH 171
SF+ELV +V I+ +V+V YK+ + R+ KV HIVVVGP GF+LC+CLKL+RCGL C H
Sbjct: 812 SFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSH 869
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 6.800e-10 Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1
Query: 4 SFSELVEDVPI---DGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCHSL 177
SF LV V I D +V+VVYK + KVGH+VV+GP GF+LC+CL+L+R GL C H L
Sbjct: 1246 SFYRLVAHVDIYMGDAVVKVVYK----RRKVGHLVVIGPDGFQLCACLQLMRRGLQCRHVL 1302
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5KFX3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX3_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 3.230e-9 Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1
Query: 7 FSELVEDVPIDGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCHSL 177
F+EL+ED +D +VR+ FS GH+V +GP GF LC+CL+LL GL C H L
Sbjct: 367 FAELLEDQVLDKLVRITRSFSDGGPNYGHLVALGPDGFVLCTCLRLLVYGLGCRHGL 423
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5JYV9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV9_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 3.230e-9 Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1
Query: 7 FSELVEDVPIDGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCHSL 177
F+EL+ED +D +VR+ FS GH+V +GP GF LC+CL+LL GL C H L
Sbjct: 418 FAELLEDQVLDKLVRITRSFSDGGPNYGHLVALGPDGFVLCTCLRLLVYGLGCRHGL 474
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5L2H3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H3_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 4.390e-9 Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 13 ELVEDVPIDGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCH 171
+LV VP+ V YK +P + GH+VVVGPGGF LCSCLK LR GL C H
Sbjct: 280 DLVSRVPVHLAAAVRYKLTPSR--PGHVVVVGPGGFYLCSCLKFLRHGLPCRH 330
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5KRH9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH9_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 8.260e-9 Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 1
Query: 16 LVEDVPIDGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCH 171
LV VP+ V YK +P + GH+VV GPGGF LCSCLKLLR GL C H
Sbjct: 707 LVSRVPVHLSAAVRYKLTPSR--PGHVVVFGPGGFYLCSCLKLLRHGLQCRH 756
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 3.930e-8 Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 13 ELVEDVPIDGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCH 171
+L+ ++P+ V YK +P + GH+VV GP GF LCSCLKLLR GL C H
Sbjct: 323 DLIGELPVHVAAAVRYKLTPAR--PGHVVVFGPNGFHLCSCLKLLRHGLVCRH 373
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Match: A0A6H5JZB4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB4_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 5.410e-8 Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 1
Query: 13 ELVEDVPIDGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRCGLHCCH 171
+L VP+ V YK +P + GH+VV GPGGF LCSCLKL+R GL C H
Sbjct: 769 DLFSRVPVHLAAAVPYKLTPSR--PGHVVVSGPGGFYLCSCLKLMRHGLPCRH 819 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig93630.17406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig93630.17406.1 >prot_S-dermatodea_contig93630.17406.1 ID=prot_S-dermatodea_contig93630.17406.1|Name=mRNA_S-dermatodea_contig93630.17406.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=59bp LSFSELVEDVPIDGIVRVVYKFSPRKIKVGHIVVVGPGGFELCSCLKLLRback to top mRNA from alignment at S-dermatodea_contig93630:15..191+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig93630.17406.1 ID=mRNA_S-dermatodea_contig93630.17406.1|Name=mRNA_S-dermatodea_contig93630.17406.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at S-dermatodea_contig93630:15..191+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig93630:15..191+ >mRNA_S-dermatodea_contig93630.17406.1 ID=mRNA_S-dermatodea_contig93630.17406.1|Name=mRNA_S-dermatodea_contig93630.17406.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at S-dermatodea_contig93630:15..191+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |