mRNA_S-dermatodea_contig9352.17398.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9352.17398.1
Unique NamemRNA_S-dermatodea_contig9352.17398.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9352.17398.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.790e-24
Identity = 53/79 (67.09%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    1 RRQGMVGAHSCSSFGQADKTRDAVRDKLRPLFNNVKNMVKTTDERGTEIVGRLSFMANQVGGFMWDDAYASQRLDRMAK 237
            RRQGMVGAHS S+FG ADK           L NNV+NM+K  DERGTEI  +LS MANQ  GFMWDDAYASQRLDRMA+
Sbjct: 1124 RRQGMVGAHSSSAFGTADKXXXXXXXXXXXLLNNVRNMLKGADERGTEISVKLSSMANQSTGFMWDDAYASQRLDRMAQ 1202
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BLAST of mRNA_S-dermatodea_contig9352.17398.1 vs. uniprot
Match: D7FY26_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY26_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 7.780e-12
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:  109 NMVKTTDERGTEIVGRLSFMANQVGGFMWDDAYASQRLDRMAK 237
            NM+K +DERGTEI  +LS MANQ  GFMWDDAYASQRLDRMA+
Sbjct: 1051 NMLKGSDERGTEISVKLSSMANQSTGFMWDDAYASQRLDRMAQ 1093
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BLAST of mRNA_S-dermatodea_contig9352.17398.1 vs. uniprot
Match: A0A835Z1S2_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 7.850e-12
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:   52 DKTRDAVRDKLRPLFNNVKNMVKTTDERGTEIVGRLSFMANQVGGFMWDDAYASQRLDRMAK 237
            DKTRD VR+KLRPL N+++ M+KT+   G  +   L  + +Q  GFMWDDAYA+ RL+R+A+
Sbjct: 1302 DKTRDQVREKLRPLLNSIRGMMKTSAGDGGVVQDLLQQVLSQEQGFMWDDAYATGRLNRLAE 1363
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BLAST of mRNA_S-dermatodea_contig9352.17398.1 vs. uniprot
Match: A0A7S2UV62_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 6.180e-10
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   52 DKTRDAVRDKLRPLFNNVKNMV--KTTDERGTEIVGRLSFMANQVGGFMWDDAYASQRLDRMAK 237
            DK RD +R++LR +F N+KNMV     D+RG + V RLS +  +  GF+ +D YAS R+DR+A+
Sbjct:  650 DKCRDQIRERLRSMFGNLKNMVILDQNDDRGRDFVDRLSAVTGKQEGFLCNDLYASSRMDRLAE 713
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BLAST of mRNA_S-dermatodea_contig9352.17398.1 vs. uniprot
Match: A0A7S2JUC2_9STRA (Hypothetical protein n=3 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUC2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.150e-9
Identity = 27/64 (42.19%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   52 DKTRDAVRDKLRPLFNNVKNMVKTTDE--RGTEIVGRLSFMANQVGGFMWDDAYASQRLDRMAK 237
            D  RD VR+K R + + +K ++K T+E     +++ R++FM +   GFMWDDAYAS++LD+++K
Sbjct:  496 DALRDQVREKFRNMISCLKGLLKNTNEDLESRDVLDRITFMLSMENGFMWDDAYASEQLDKLSK 559
[Close]
BLAST of mRNA_S-dermatodea_contig9352.17398.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.160e-9
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   70 VRDKLRPLFNNVKNMVKTTDERGTEIVGRLSFMANQVGGFMWDDAYASQRLDRMAK 237
            VRDKLRPL NN++ M+K+       +   LSF+ +   GFMWDDAYA+ RLDR+++
Sbjct:  912 VRDKLRPLLNNIRGMMKSAVGDAGAVQDLLSFVLSMEQGFMWDDAYATARLDRLSE 967
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9352.17398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JFR3_9PHAE2.790e-2467.091,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
D7FY26_ECTSI7.780e-1276.741,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
A0A835Z1S2_9STRA7.850e-1251.611,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A7S2UV62_9STRA6.180e-1046.88Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2JUC2_9STRA1.150e-942.19Hypothetical protein n=3 Tax=Leptocylindrus danicu... [more]
A0A835Z4B5_9STRA1.160e-950.001,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9352contigS-dermatodea_contig9352:7455..8445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog2880.D7FY26
KEGG koko:K11000
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
COG Functional cat.S
CAZyGT48
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons2
Model size238
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9352.17398.1prot_S-dermatodea_contig9352.17398.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9352 7467..8445 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925402.5062165-UTR-S-dermatodea_contig9352:7454..74661622925402.5062165-UTR-S-dermatodea_contig9352:7454..7466Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9352 7455..7466 +
1694079909.3887703-UTR-S-dermatodea_contig9352:7454..74661694079909.3887703-UTR-S-dermatodea_contig9352:7454..7466Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9352 7455..7466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925402.518801-CDS-S-dermatodea_contig9352:7466..75621622925402.518801-CDS-S-dermatodea_contig9352:7466..7562Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9352 7467..7562 +
1694079909.406851-CDS-S-dermatodea_contig9352:7466..75621694079909.406851-CDS-S-dermatodea_contig9352:7466..7562Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9352 7467..7562 +
1622925402.5326707-CDS-S-dermatodea_contig9352:8316..84451622925402.5326707-CDS-S-dermatodea_contig9352:8316..8445Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9352 8317..8445 +
1694079909.418511-CDS-S-dermatodea_contig9352:8316..84451694079909.418511-CDS-S-dermatodea_contig9352:8316..8445Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9352 8317..8445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9352.17398.1

>prot_S-dermatodea_contig9352.17398.1 ID=prot_S-dermatodea_contig9352.17398.1|Name=mRNA_S-dermatodea_contig9352.17398.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=75bp
MVGAHSCSSFGQADKTRDAVRDKLRPLFNNVKNMVKTTDERGTEIVGRLS
FMANQVGGFMWDDAYASQRLDRMAK
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mRNA from alignment at S-dermatodea_contig9352:7455..8445+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9352.17398.1 ID=mRNA_S-dermatodea_contig9352.17398.1|Name=mRNA_S-dermatodea_contig9352.17398.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=991bp|location=Sequence derived from alignment at S-dermatodea_contig9352:7455..8445+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCGGCAGGGCATGGTGGGGGCACACAGCTGCTCCTCCTTCGGACAGGC
AGACAAGACGCGCGACGCCGTGAGAGATAAGCTGAGGCCTCTCTTCAACA
ACGTTAAGGTGGGTGTGCGAGTTGCGATTTTAGCTCGTCCTTCCTTTTGC
AGCAATGGGACTCGTTACACAGTAGTGAAACCGGAACGGGGTGTTGGTGC
TTTCCAATTCTGTGTTTTGTTTTAGGCCGGTAAGATTCATTTTGCCGCCA
GGCAAGCGCGGTGCACGTTCCGTTGAGGCAGATCCGGTAGGGCCCTGGGC
TTGTCGCAATTCCTCTCGAAACTCTTGCCGTGACCTTTCCGTGCTGGGTT
CCCGCCGTGAATGCCGATCGGCCCATCGCGTGTCCAAGGTCCGCGTGCCG
TTCACCTTTGGCGCTGCCTGGAATTCTCGTTTCCGGTTACAATCCATGTG
TTGTCACGTGCCGGCCTTCACTGGTATATTGCTGTTTGTCTGTTGTAATG
GAGTCGCAGTGTCTCGTGGCTACAGCAGTGTTAATTGTGCCAGCGTGCGC
AGAGCGCTGTCGCGGATTGTACATGTTCGACTTTTGTAACTCCAGTATTT
TGAAATCTGCAACACTTGCATGAGTCTTGCATTCGGTCTTTCTCCACGGT
TCCCCAGGTAACTCTGAATATCGATATTATACGCCTCCCCTCTGCCGCTT
ACGTAAAATGTTTCGCCCCCTATACTCCACCCGCTCGTGCGCCGTGTTTC
CCGCGGTATGCTCTTGGACCCCCAAGCTGCGGAACCCCGAAATTAAAACA
ATCGAATAGGGCGCGACTCTGGTGTTGATACCCCACCCTCGATTTTGATC
GTTGGCCCGCAGAATATGGTCAAGACCACGGACGAGAGGGGGACTGAGAT
CGTGGGCAGGCTATCATTCATGGCCAACCAAGTCGGCGGGTTCATGTGGG
ACGACGCGTACGCCAGCCAGCGCCTCGACCGCATGGCGAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9352:7455..8445+

>mRNA_S-dermatodea_contig9352.17398.1 ID=mRNA_S-dermatodea_contig9352.17398.1|Name=mRNA_S-dermatodea_contig9352.17398.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at S-dermatodea_contig9352:7455..8445+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGGGGGCACACAGCTGCTCCTCCTTCGGACAGGCAGACAAGACGCG
CGACGCCGTGAGAGATAAGCTGAGGCCTCTCTTCAACAACGTTAAGATGG
TGGGGGCACACAGCTGCTCCTCCTTCGGACAGGCAGACAAGACGCGCGAC
GCCGTGAGAGATAAGCTGAGGCCTCTCTTCAACAACGTTAAGAATATGGT
CAAGACCACGGACGAGAGGGGGACTGAGATCGTGGGCAGGCTATCATTCA
TGGCCAACCAAGTCGGCGGGTTCATGTGGGACGACGCGTACGCCAGCCAG
CGCCTCGACCGCATGGCGAAGAATATGGTCAAGACCACGGACGAGAGGGG
GACTGAGATCGTGGGCAGGCTATCATTCATGGCCAACCAAGTCGGCGGGT
TCATGTGGGACGACGCGTACGCCAGCCAGCGCCTCGACCGCATGGCGAAG
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