mRNA_S-dermatodea_contig935.17394.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig935.17394.1
Unique NamemRNA_S-dermatodea_contig935.17394.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig935.17394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig935contigS-dermatodea_contig935:20799..21226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size430
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925402.146247-UTR-S-dermatodea_contig935:20798..208901622925402.146247-UTR-S-dermatodea_contig935:20798..20890Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig935 20799..20890 +
1694079909.1413548-UTR-S-dermatodea_contig935:20798..208901694079909.1413548-UTR-S-dermatodea_contig935:20798..20890Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig935 20799..20890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925402.1592038-CDS-S-dermatodea_contig935:20890..212261622925402.1592038-CDS-S-dermatodea_contig935:20890..21226Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig935 20891..21226 +
1694079909.154287-CDS-S-dermatodea_contig935:20890..212261694079909.154287-CDS-S-dermatodea_contig935:20890..21226Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig935 20891..21226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig935.17394.1prot_S-dermatodea_contig935.17394.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig935 20891..21226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig935.17394.1

>prot_S-dermatodea_contig935.17394.1 ID=prot_S-dermatodea_contig935.17394.1|Name=mRNA_S-dermatodea_contig935.17394.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
MYTHAYAQLIHGFNQLVPCNPHPVPPYSPAPFRQQHTATVCWLDHWLGHN
FKKNQHGIISERHSCTTLTHTGGGFLYRVGVGGLGCNGDCGVATTHERVL
VWFPGSSSPAYF
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mRNA from alignment at S-dermatodea_contig935:20799..21226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig935.17394.1 ID=mRNA_S-dermatodea_contig935.17394.1|Name=mRNA_S-dermatodea_contig935.17394.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=428bp|location=Sequence derived from alignment at S-dermatodea_contig935:20799..21226+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCTTCCCCGCCACTAAAATACACGACGAAAAAAAACGCCCGCTGACGCG
AGAGGCGACTGGGCAATTTCATGAGAAGAGTGACATCGAAACATGTACAC
ACATGCGTACGCTCAACTCATTCACGGGTTCAATCAGCTTGTTCCCTGTA
ACCCACACCCCGTCCCCCCCTACTCGCCTGCGCCGTTTCGGCAGCAGCAC
ACGGCAACTGTGTGTTGGTTAGATCACTGGTTAGGTCACAACTTCAAAAA
AAATCAACACGGAATAATATCAGAAAGACACTCATGCACTACACTCACTC
ACACGGGTGGAGGCTTTTTATACCGGGTGGGGGTGGGGGGATTGGGGTGT
AACGGGGATTGCGGGGTTGCAACAACACACGAAAGGGTGCTGGTCTGGTT
TCCAGGCAGCTCTTCCCCCGCCTATTTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig935:20799..21226+

>mRNA_S-dermatodea_contig935.17394.1 ID=mRNA_S-dermatodea_contig935.17394.1|Name=mRNA_S-dermatodea_contig935.17394.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig935:20799..21226+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTACACACATGCGTACGCTCAACTCATTCACGGGTTCAATCAGCTTGT
TCCCTGTAACCCACACCCCGTCCCCCCCTACTCGCCTGCGCCGTTTCGGC
AGCAGCACACGGCAACTGTGTGTTGGTTAGATCACTGGTTAGGTCACAAC
TTCAAAAAAAATCAACACGGAATAATATCAGAAAGACACTCATGCACTAC
ACTCACTCACACGGGTGGAGGCTTTTTATACCGGGTGGGGGTGGGGGGAT
TGGGGTGTAACGGGGATTGCGGGGTTGCAACAACACACGAAAGGGTGCTG
GTCTGGTTTCCAGGCAGCTCTTCCCCCGCCTATTTCATGTACACACATGC
GTACGCTCAACTCATTCACGGGTTCAATCAGCTTGTTCCCTGTAACCCAC
ACCCCGTCCCCCCCTACTCGCCTGCGCCGTTTCGGCAGCAGCACACGGCA
ACTGTGTGTTGGTTAGATCACTGGTTAGGTCACAACTTCAAAAAAAATCA
ACACGGAATAATATCAGAAAGACACTCATGCACTACACTCACTCACACGG
GTGGAGGCTTTTTATACCGGGTGGGGGTGGGGGGATTGGGGTGTAACGGG
GATTGCGGGGTTGCAACAACACACGAAAGGGTGCTGGTCTGGTTTCCAGG
CAGCTCTTCCCCCGCCTATTTC
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