mRNA_S-dermatodea_contig93405.17388.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig93405.17388.1
Unique NamemRNA_S-dermatodea_contig93405.17388.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig93405.17388.1 vs. uniprot
Match: D8LCM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM0_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 7.350e-49
Identity = 94/195 (48.21%), Postives = 117/195 (60.00%), Query Frame = 1 
Query:    1 EISGLTVCFDDFVGDDDTSTNTTENASGTYDFVMITLVFGLWVDVFSAVSLSLIYRSPLDAKSAHKIPPEDNRHCGGTVIVHFLVPFSWAIIFVFGGIASMDYAANSSCGG-QGGSGLETYLKGTGAVMILGGTAMFFVSLVILLFACGGPGNKCNA----------GCCKTVRRWFHRFFLSKGPYVDMCWHLQ 552
            EI  L VCF++ + +DD  T   ENAS  Y  +M TLV GL VD  SAV LSL+YRSPLD KS HKIPP D RHCGGT +VHF+ PFSW +++  GG  S+ Y  N+ CGG  GG GLE+YL  +GA+M + GT M  +S V L+FAC                   GCC   R   H+ F+SK P  D+ W +Q
Sbjct:  217 EIGELNVCFEENLDEDDDDTPE-ENASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSPLDIKSTHKIPPGDMRHCGGTCLVHFVAPFSWGLVYWAGGYVSIMYGDNAPCGGGTGGDGLESYLTISGALMAVFGTGMLALSFVTLMFACXXXXXXXXXXXXXXXXXXXGCCSKARDAVHKRFMSKSPIFDLAWQVQ 410
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BLAST of mRNA_S-dermatodea_contig93405.17388.1 vs. uniprot
Match: A0A6H5JS15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS15_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 8.850e-49
Identity = 91/191 (47.64%), Postives = 116/191 (60.73%), Query Frame = 1 
Query:    1 EISGLTVCFDDFVGDDDTSTNTTENASGTYDFVMITLVFGLWVDVFSAVSLSLIYRSPLDAKSAHKIPPEDNRHCGGTVIVHFLVPFSWAIIFVFGGIASMDYAANSSCGG-QGGSGLETYLKGTGAVMILGGTAMFFVSLVILLFACGGPGNKCNA------GCCKTVRRWFHRFFLSKGPYVDMCWHLQ 552
            EI  L+VCF++   +DD  T   ENAS  +  +M+ LV  L VD  SAV LSL+YRSPLD KSAHKIPP D RHCGGT +VHF+ PF W +++  GGIAS  Y  N+ CGG  GG G+E+YLK +G +MI+ GT M  +S V L+ AC               GCC   R   H+  +SK P  D+ W +Q
Sbjct:   93 EIGELSVCFEENPEEDDDDT-LEENASSAFGALMLNLVLSLLVDFISAVLLSLVYRSPLDIKSAHKIPPGDMRHCGGTFLVHFVAPFFWGLVYFTGGIASSMYGDNAPCGGGNGGDGMESYLKISGILMIVFGTGMLALSFVALMLACXXXXXXXXXXXXXXXGCCSRARDAVHKRLMSKSPIFDLAWQVQ 282
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig93405.17388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCM0_ECTSI7.350e-4948.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS15_9PHAE8.850e-4947.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig93405contigS-dermatodea_contig93405:9..560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size552
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925401.7653484-CDS-S-dermatodea_contig93405:8..5601622925401.7653484-CDS-S-dermatodea_contig93405:8..560Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93405 9..560 +
1694079908.9012108-CDS-S-dermatodea_contig93405:8..5601694079908.9012108-CDS-S-dermatodea_contig93405:8..560Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93405 9..560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig93405.17388.1prot_S-dermatodea_contig93405.17388.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig93405 9..560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig93405.17388.1

>prot_S-dermatodea_contig93405.17388.1 ID=prot_S-dermatodea_contig93405.17388.1|Name=mRNA_S-dermatodea_contig93405.17388.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=184bp
EISGLTVCFDDFVGDDDTSTNTTENASGTYDFVMITLVFGLWVDVFSAVS
LSLIYRSPLDAKSAHKIPPEDNRHCGGTVIVHFLVPFSWAIIFVFGGIAS
MDYAANSSCGGQGGSGLETYLKGTGAVMILGGTAMFFVSLVILLFACGGP
GNKCNAGCCKTVRRWFHRFFLSKGPYVDMCWHLQ
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mRNA from alignment at S-dermatodea_contig93405:9..560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig93405.17388.1 ID=mRNA_S-dermatodea_contig93405.17388.1|Name=mRNA_S-dermatodea_contig93405.17388.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=552bp|location=Sequence derived from alignment at S-dermatodea_contig93405:9..560+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAATATCAGGGCTCACTGTCTGCTTCGACGATTTTGTCGGCGATGACGA
CACCTCGACGAACACCACGGAAAACGCCTCCGGCACGTATGATTTCGTCA
TGATCACGCTGGTGTTCGGGCTCTGGGTGGACGTTTTTTCTGCCGTCTCC
CTGTCGTTAATATACCGGTCGCCGCTTGACGCCAAGTCCGCGCACAAGAT
CCCCCCCGAAGACAACCGGCACTGCGGGGGCACCGTGATTGTTCATTTCC
TTGTTCCGTTTAGTTGGGCCATTATATTCGTTTTCGGTGGCATAGCCAGC
ATGGACTACGCGGCTAACTCGTCGTGCGGGGGACAGGGCGGGTCCGGGCT
GGAGACTTACCTCAAAGGGACGGGTGCGGTGATGATATTGGGCGGGACAG
CAATGTTCTTCGTGTCACTGGTGATTCTGTTGTTCGCTTGCGGCGGGCCG
GGAAACAAGTGCAACGCCGGGTGTTGCAAAACCGTTCGACGGTGGTTTCA
CAGGTTTTTCCTCTCCAAGGGCCCCTACGTAGATATGTGCTGGCATCTTC
AA
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Coding sequence (CDS) from alignment at S-dermatodea_contig93405:9..560+

>mRNA_S-dermatodea_contig93405.17388.1 ID=mRNA_S-dermatodea_contig93405.17388.1|Name=mRNA_S-dermatodea_contig93405.17388.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at S-dermatodea_contig93405:9..560+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAATATCAGGGCTCACTGTCTGCTTCGACGATTTTGTCGGCGATGACGA
CACCTCGACGAACACCACGGAAAACGCCTCCGGCACGTATGATTTCGTCA
TGATCACGCTGGTGTTCGGGCTCTGGGTGGACGTTTTTTCTGCCGTCTCC
CTGTCGTTAATATACCGGTCGCCGCTTGACGCCAAGTCCGCGCACAAGAT
CCCCCCCGAAGACAACCGGCACTGCGGGGGCACCGTGATTGTTCATTTCC
TTGTTCCGTTTAGTTGGGCCATTATATTCGTTTTCGGTGGCATAGCCAGC
ATGGACTACGCGGCTAACTCGTCGTGCGGGGGACAGGGCGGGTCCGGGCT
GGAGACTTACCTCAAAGGGACGGGTGCGGTGATGATATTGGGCGGGACAG
CAATGTTCTTCGTGTCACTGGTGATTCTGTTGTTCGCTTGCGGCGGGCCG
GGAAACAAGTGCAACGCCGGGTGTTGCAAAACCGTTCGACGGTGGTTTCA
CAGGTTTTTCCTCTCCAAGGGCCCCTACGTAGATATGTGCTGGCATCTTC
AAGAAATATCAGGGCTCACTGTCTGCTTCGACGATTTTGTCGGCGATGAC
GACACCTCGACGAACACCACGGAAAACGCCTCCGGCACGTATGATTTCGT
CATGATCACGCTGGTGTTCGGGCTCTGGGTGGACGTTTTTTCTGCCGTCT
CCCTGTCGTTAATATACCGGTCGCCGCTTGACGCCAAGTCCGCGCACAAG
ATCCCCCCCGAAGACAACCGGCACTGCGGGGGCACCGTGATTGTTCATTT
CCTTGTTCCGTTTAGTTGGGCCATTATATTCGTTTTCGGTGGCATAGCCA
GCATGGACTACGCGGCTAACTCGTCGTGCGGGGGACAGGGCGGGTCCGGG
CTGGAGACTTACCTCAAAGGGACGGGTGCGGTGATGATATTGGGCGGGAC
AGCAATGTTCTTCGTGTCACTGGTGATTCTGTTGTTCGCTTGCGGCGGGC
CGGGAAACAAGTGCAACGCCGGGTGTTGCAAAACCGTTCGACGGTGGTTT
CACAGGTTTTTCCTCTCCAAGGGCCCCTACGTAGATATGTGCTGGCATCT
TCAA
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