mRNA_S-dermatodea_contig9340.17387.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9340.17387.1
Unique NamemRNA_S-dermatodea_contig9340.17387.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9340.17387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9340contigS-dermatodea_contig9340:2593..3820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size301
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925401.7205071-CDS-S-dermatodea_contig9340:2592..27481622925401.7205071-CDS-S-dermatodea_contig9340:2592..2748Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9340 2593..2748 -
1694079908.8789124-CDS-S-dermatodea_contig9340:2592..27481694079908.8789124-CDS-S-dermatodea_contig9340:2592..2748Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9340 2593..2748 -
1622925401.7311063-CDS-S-dermatodea_contig9340:3676..38201622925401.7311063-CDS-S-dermatodea_contig9340:3676..3820Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9340 3677..3820 -
1694079908.8914907-CDS-S-dermatodea_contig9340:3676..38201694079908.8914907-CDS-S-dermatodea_contig9340:3676..3820Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9340 3677..3820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9340.17387.1prot_S-dermatodea_contig9340.17387.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9340 2593..3820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9340.17387.1

>prot_S-dermatodea_contig9340.17387.1 ID=prot_S-dermatodea_contig9340.17387.1|Name=mRNA_S-dermatodea_contig9340.17387.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=100bp
IFPAELCVCGVRAWPHRFGRPGGPAQPVWERFWVVCVGKPVVCLRPEPIL
GRVLQGQRLAIRRVKGSRHARRRKDTAREMRPAPTHSLRNTPPRRIGETA
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mRNA from alignment at S-dermatodea_contig9340:2593..3820-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9340.17387.1 ID=mRNA_S-dermatodea_contig9340.17387.1|Name=mRNA_S-dermatodea_contig9340.17387.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1228bp|location=Sequence derived from alignment at S-dermatodea_contig9340:2593..3820- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATATTCCCAGCGGAGCTCTGCGTTTGCGGGGTTCGGGCCTGGCCCCATAG
ATTCGGGCGCCCCGGCGGGCCCGCCCAGCCAGTCTGGGAGCGTTTCTGGG
TCGTATGTGTCGGCAAGCCAGTCGTCTGCTTACGGCCAGAGCCGGTGAGA
GAGCGCGCGCGCGTGTTTACGCTTGGAAAAATGATGCAGGGCGATTGGCC
TTGGCGTTGTGGTGCGCTGCGGAGGAATTTTCTTTGCAAACCGAGGCTCT
TTTTCGTCTGAATATCCCTTGTGAATTGCATGTAATAGTACTCTGTTCTG
TAGCGCTATGCCCGTTTTTTTAAGAGGTAATTGTTGTAGGCTCTCAATAT
TTTCCTGGTTGTATTGTATATAAGACTAATCGTGTTAGGGCTTCGAAGCT
ATTTCGATATTTGTTTTTTCCGCCGTGCTGTTTTTTCGTGAGCTGTACAG
GCACCACTTCCTACCTACCAACGTACACCTCATGAAAGTAGCCGTGGCTT
CCTGTCGTTCTGTAGCTATAATAGTATCAGTAATTGCAGTGTTCCCCAAC
CATGGAGGGTAGCCACAGCATTCTTCGCGGTCTCCAGTTTGCGCATACTG
TGCATATGTGCATACTGAGCAATGGATACACACCATAAGAAGTAATGAAA
GCCCAAGGACCTGGAGGCGTGGGCGGAAAACAAAGAAACAGACAACAACT
TTAGTGACTGCGTTCGTTTATGCATACATACCAGCATCTGCCGTTGTTCT
ACATACTATTAGGGAGGTACACTATAATCAAGTAATCAGGACCAGATCTC
ACAACCATGAATACCCAACTAGTCCTACCATGATTACCCAAACAAACAAA
AAATCTCATGAAGAACAAAAAAGACAACGACATTTGGCCGTACACAAGAA
CATCGACCTTGAAATCTCGATAACTCCAGCCTATTTTCATATTTCTAGAT
TCAGTCTTGTGGCAAAGTTGGACCTGTTTACTATGGTCTATTAATAGTCC
CCCGTAATATTAATAGCTATTATAGTTAGCAAAAAGTTTTACAACTCCAT
TGCACCCGGCCGGCGCGTGCAGATACTCGGACGGGTACTCCAAGGTCAAA
GGCTGGCGATCCGGCGAGTAAAGGGCTCGAGACACGCTCGGCGGAGGAAA
GATACAGCCCGAGAGATGCGGCCCGCCCCAACCCACTCACTTCGAAACAC
ACCGCCGCGGCGAATCGGCGAGACGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9340:2593..3820-

>mRNA_S-dermatodea_contig9340.17387.1 ID=mRNA_S-dermatodea_contig9340.17387.1|Name=mRNA_S-dermatodea_contig9340.17387.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at S-dermatodea_contig9340:2593..3820- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATATTCCCAGCGGAGCTCTGCGTTTGCGGGGTTCGGGCCTGGCCCCATAG
ATTCGGGCGCCCCGGCGGGCCCGCCCAGCCAGTCTGGGAGCGTTTCTGGG
TCGTATGTGTCGGCAAGCCAGTCGTCTGCTTACGGCCAGAGCCGATATTC
CCAGCGGAGCTCTGCGTTTGCGGGGTTCGGGCCTGGCCCCATAGATTCGG
GCGCCCCGGCGGGCCCGCCCAGCCAGTCTGGGAGCGTTTCTGGGTCGTAT
GTGTCGGCAAGCCAGTCGTCTGCTTACGGCCAGAGCCGATACTCGGACGG
GTACTCCAAGGTCAAAGGCTGGCGATCCGGCGAGTAAAGGGCTCGAGACA
CGCTCGGCGGAGGAAAGATACAGCCCGAGAGATGCGGCCCGCCCCAACCC
ACTCACTTCGAAACACACCGCCGCGGCGAATCGGCGAGACGGCGATACTC
GGACGGGTACTCCAAGGTCAAAGGCTGGCGATCCGGCGAGTAAAGGGCTC
GAGACACGCTCGGCGGAGGAAAGATACAGCCCGAGAGATGCGGCCCGCCC
CAACCCACTCACTTCGAAACACACCGCCGCGGCGAATCGGCGAGACGGCG
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