mRNA_S-dermatodea_contig9337.17384.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9337.17384.1
Unique NamemRNA_S-dermatodea_contig9337.17384.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9337.17384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9337contigS-dermatodea_contig9337:1282..2550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size547
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9337.17384.1prot_S-dermatodea_contig9337.17384.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9337 1282..1608 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925401.3239927-CDS-S-dermatodea_contig9337:1281..16081622925401.3239927-CDS-S-dermatodea_contig9337:1281..1608Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9337 1282..1608 -
1694079908.5615125-CDS-S-dermatodea_contig9337:1281..16081694079908.5615125-CDS-S-dermatodea_contig9337:1281..1608Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9337 1282..1608 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925401.3339853-UTR-S-dermatodea_contig9337:1608..17051622925401.3339853-UTR-S-dermatodea_contig9337:1608..1705Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9337 1609..1705 -
1694079908.5805495-UTR-S-dermatodea_contig9337:1608..17051694079908.5805495-UTR-S-dermatodea_contig9337:1608..1705Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9337 1609..1705 -
1622925401.3469539-UTR-S-dermatodea_contig9337:2428..25501622925401.3469539-UTR-S-dermatodea_contig9337:2428..2550Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9337 2429..2550 -
1694079908.5908444-UTR-S-dermatodea_contig9337:2428..25501694079908.5908444-UTR-S-dermatodea_contig9337:2428..2550Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9337 2429..2550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9337.17384.1

>prot_S-dermatodea_contig9337.17384.1 ID=prot_S-dermatodea_contig9337.17384.1|Name=mRNA_S-dermatodea_contig9337.17384.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
MRDAVSNDPIPPSWTTPAEETPSTAPGATGLPVAGIARHCFRSVPAHRIV
GGGLGRRYDHAARLSDRHFYGDDNRRHPHQLHHQSPDLTSEIASSGESSP
PALQEDSPA
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mRNA from alignment at S-dermatodea_contig9337:1282..2550-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9337.17384.1 ID=mRNA_S-dermatodea_contig9337.17384.1|Name=mRNA_S-dermatodea_contig9337.17384.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1269bp|location=Sequence derived from alignment at S-dermatodea_contig9337:1282..2550- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCACGCGAGCGAGGGCTTCGCGCCGTAGCTACCCCTATCCTCTTCCTGG
CGGAGAGGAGATGGTGAAGCCCCCCTTCGCTTCACAATTCAGGCGAAGGA
GGCTCGTGGCGCTCAAGCCAAGGTCAGCGTGCGTTCTGTTTTCGTCTGTG
TACCGGGTACAAGGCCGTATACTTCTGTGTGTTGTGTGTTGTGTACTTGT
AGAGGTATCATGGTTGACTGGCATCGCTTTTGTATTGCCGATGCGAGAGG
CTTTCACCAGCCACACTGCAGGGAGCAGCAGTGTTCGTGCAGTCCAGCAA
GACACAGAGAGGCAGTGGTCGGATATACTGCAGGGAATCAGGCCTCACGT
TCCGTGCTGTTAGCCGCCGGCCCACCGAATGAACCGTAGCCAAGCCACGC
GGAGAGTTTCGCACCAAAAAATCACGCGCCAACCCAAACACATCATGTAT
CATGTCATATAATACGCCCAGTGTGCCAGGGAGTTAGGGATGTTTTTGTT
TTTTTAATAAACTAGTGCGTGCCCCATGGCTACGCCCGTGTGAGGTGTGC
GTTGGCAGGACGATGTGCCGACGGAACGCGACACGGAGGTCGAACGCGGT
CGAGCTATACTGTGCGTGTCGCTTCTGTGCGTGTCACTGCTGTGTTTTCG
CTTTCATAGAAAAAAAACGCTCAACACAAACATCAAGTTAGGTGGCATCA
GACAGCATCCTTCTCTAAAATCAATACAAGTATACACAATCAGTCATTGT
TGATAAAATACGCCCACTCCAACAGCACCTTCTTTACAAAGCCCCTCTCC
TTTTTCTCTTTTCTCTAATGTATCATACCGCACCCGACCAACCAGGGCCT
GCTATTAATTTTTCAATTCGCCACCACCAGCAGCAACACACCGATCAACA
ACCTCTACGCAGAGCGAGCGCTCTTGACGACGCACGCACAACATGCGTGA
CGCCGTCAGCAACGACCCAATCCCGCCGTCATGGACCACTCCCGCGGAGG
AGACACCCTCCACGGCGCCCGGAGCAACCGGGCTCCCCGTCGCAGGCATC
GCCCGCCATTGCTTCCGCTCCGTACCCGCCCACCGCATCGTGGGCGGCGG
GCTAGGACGCAGATACGACCACGCCGCTCGTCTCAGCGACCGCCACTTCT
ATGGCGACGACAATCGCCGCCACCCCCACCAGCTACACCACCAGTCCCCC
GATCTCACATCCGAGATCGCAAGCAGTGGCGAGTCTTCGCCGCCCGCGTT
GCAAGAAGACTCCCCCGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9337:1282..2550-

>mRNA_S-dermatodea_contig9337.17384.1 ID=mRNA_S-dermatodea_contig9337.17384.1|Name=mRNA_S-dermatodea_contig9337.17384.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig9337:1282..2550- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGTGACGCCGTCAGCAACGACCCAATCCCGCCGTCATGGACCACTCC
CGCGGAGGAGACACCCTCCACGGCGCCCGGAGCAACCGGGCTCCCCGTCG
CAGGCATCGCCCGCCATTGCTTCCGCTCCGTACCCGCCCACCGCATCGTG
GGCGGCGGGCTAGGACGCAGATACGACCACGCCGCTCGTCTCAGCGACCG
CCACTTCTATGGCGACGACAATCGCCGCCACCCCCACCAGCTACACCACC
AGTCCCCCGATCTCACATCCGAGATCGCAAGCAGTGGCGAGTCTTCGCCG
CCCGCGTTGCAAGAAGACTCCCCCGCCATGCGTGACGCCGTCAGCAACGA
CCCAATCCCGCCGTCATGGACCACTCCCGCGGAGGAGACACCCTCCACGG
CGCCCGGAGCAACCGGGCTCCCCGTCGCAGGCATCGCCCGCCATTGCTTC
CGCTCCGTACCCGCCCACCGCATCGTGGGCGGCGGGCTAGGACGCAGATA
CGACCACGCCGCTCGTCTCAGCGACCGCCACTTCTATGGCGACGACAATC
GCCGCCACCCCCACCAGCTACACCACCAGTCCCCCGATCTCACATCCGAG
ATCGCAAGCAGTGGCGAGTCTTCGCCGCCCGCGTTGCAAGAAGACTCCCC
CGCC
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