mRNA_S-dermatodea_contig9336.17383.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig9336.17383.1 vs. uniprot
Match: D8LI31_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI31_ECTSI) HSP 1 Score: 441 bits (1135), Expect = 2.080e-145 Identity = 319/547 (58.32%), Postives = 348/547 (63.62%), Query Frame = 1
Query: 49 RRLRCWISTFGVGLACWLASAADPLPQQVEHPFRNLAAWLREASPDLRSADPKAISRGITVLSNSQSYVKSFDGMAYELKGKLRDGANTDDIKALRQDAELYESATSAKKAGKLVKLLIEVEKALNAAEAAEIASQFDPDVSARYMKDAGLRFLPTPPPPQAENATANNATSEVVGVDSGIE---------NPVTATSEGTSSVPSTSDVGASPSAKRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQAVRGSKKNGRGGFPSGSVSDEG-------PVEAFVARVGGCDVQCLLMVDA-----SEERLVVAVGDALSGEALMESLIEEPAVVQLASHGLMRETAYVNHAAFQCACDMLEWAGPLIKVSLEAGGPFEGYGVHCAGHSFGGAVAACLAGLLDGAIDPEAE--------------------EIERDGARGAEGARRRALRDRDSKDGGGARSVSSESSDDEGAVRMEGAAPWVGVCGDKVTCVTLGCPPCLSRNLRLPFVTSFVLGDDMVPRTSNESLRRLKRRLLQ 1566
RRLRCW+ FG LACW+A AADP QQ EHPFRNLAAWLREASPD+RSA+PKAISRGITVLSNSQSYVKSFDGMAYELKGK+++ +T DI+ L AELYESA+S KKA KLV+LLIEVE+ALN+AEAAEIASQ DP +A+YMKDAGLRFLP P N T S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P+EAFV V GC+V+C LM+D E RLVVAVGD+L+GEAL+ESL EEPAVVQLASHGLMRETAYVN AFQCACD+LEWAGP IK S+E GG FEGY VHCAGHSFGGAVAACLAGLLDGAID E AVR++GA PWVG+ D VTCVTLGCPPCLS+NLRLPFVTSFVLGDDMVPRTS+ESLRRLKRRLLQ
Sbjct: 5 RRLRCWLVAFGGTLACWVALAADPSLQQAEHPFRNLAAWLREASPDMRSAEPKAISRGITVLSNSQSYVKSFDGMAYELKGKIKETGSTADIEKLTGQAELYESASSVKKANKLVRLLIEVERALNSAEAAEIASQSDPSRAAQYMKDAGLRFLPDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGPTRVSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEPLEAFVVNVAGCEVRCFLMLDERGGEEGEGRLVVAVGDSLTGEALLESLFEEPAVVQLASHGLMRETAYVNRVAFQCACDILEWAGPFIKASVEPGGAFEGYRVHCAGHSFGGAVAACLAGLLDGAIDVEPSGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRVDGAEPWVGIRRDGVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQ 551
BLAST of mRNA_S-dermatodea_contig9336.17383.1 vs. uniprot
Match: A0A835YUE7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE7_9STRA) HSP 1 Score: 127 bits (318), Expect = 8.010e-28 Identity = 137/450 (30.44%), Postives = 189/450 (42.00%), Query Frame = 1
Query: 271 MAYELKGKL-RDGANTDDIKALRQDAELYESATSAKKAGKLVKLLIEVEKALNAAEAAEIASQ--FDPDVSARYMKDAGLRFLPTPPPPQAENATANNATSEVVGVDSGIENPVTATSEGTSSVPSTSDVGASPSAKRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQAVRGSKKNGRGGFPSGSVSDEGPVEAFVARVGGCDVQCLLMVDASEERLVVAVGDALSGEALMESLIEEPAVVQLASHGLMRETAYVNHAAFQCACDMLEWAGPLIKVSLEAGGPFEGYGVHCAGHSFGGAVAACLAGLLDGAIDPEA-----------EEIERDGARGAEGARRRALRDRDSKDGGGARSVSSESSDDEGAVRMEG----AAPWVGVCGDKVTCVTLGCPPCLSRNLRLPFVTSFVLGDDMVPRTSNESLRRLKRRLLQ 1566
MAYE+ G++ + T D+ A+R++A SA+ A KL++LL+E+EKAL+AAE E A+ +PD +A Y AG LP P + V D+ + A +G + D A P +K GG S S G V C L+ +A +R+V A+ D L G AL+ +L P + LA+ GL+ ET + A + A +L P + L + G V GHSF GAVAA AGLLDGA+ E +G G+ AR + GG +R + +G + + +VG +V CVT GCPPC+S LP VTSFVLGDDMVPR S +SL +LKRRL Q
Sbjct: 1 MAYEVGGRMSKSSLTTADVHAVREEALATGSASVESDALKLMELLVEIEKALSAAEIVECAAADLANPDTAADYAAQAGYVPLPAVPXXXXXXXXXXXXXXQTVA-DASSDAAQAAMQQGDKD--NAGDATAGPDSKGGAFTAADAAALAQLPPVPPVTIPVPA--------------------------GGDTGSSSSSSGAVH------------CRLLYNAQGKRVVAALADDLGGGALLRALSAAPIALPLAARGLLHETLHTAPAVWAAAHALLAAIAPAVLNFLRSPAG-AGATVLFVGHSFAGAVAAVAAGLLDGALAVEGGGGSXXXXXXXSGRRSEGKVGSAEARCK---------GGSSRRAKGVAEGGDGGMXXXXXXXXSGGYVGAARGRVKCVTFGCPPCVSGAAALPCVTSFVLGDDMVPRVSAQSLEQLKRRLRQ 399
BLAST of mRNA_S-dermatodea_contig9336.17383.1 vs. uniprot
Match: K8ZAB7_NANGC (Fructose-bisphosphate aldolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZAB7_NANGC) HSP 1 Score: 92.8 bits (229), Expect = 4.370e-16 Identity = 81/243 (33.33%), Postives = 120/243 (49.38%), Query Frame = 1
Query: 874 EAFVARVGGCDVQCLLMVDASEERLVVAVGDALSGEALMESLIEEPAVVQLASHGLMRETAYVNHAAFQCACDMLEWAGPLIKVSLEAGGPFEGYGVHCAGHSFGGAVAACLAGLLDGAIDPE----AEEIERDGARGAEGARRR-ALRDRDSKDG-GGARSVSSESSDDEGAVRMEGAAPWV-----GVCGDKVTCVTLGCPPCLSRNLR--LPFVTSFVLGDDMVPRTSNESLRRLKRRLL 1563
E F++ GG + LL+VD RL ++VGD+L+ ++ L V L GL+R + VN + A ++E ++ +L P GY +H G S GG+V A +AG+LDG+I E A R R GAR A+ D +G GA+ S + + P G+ D VT PC+S+N+R F TSF+LGDDM+PR + S++RL++RLL
Sbjct: 208 EDFLSVEGGT-FRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPSLTVPLRPRGLLRRSMMVNPRLWAAAVTVIERVKAVLTTALRETCP--GYALHVVGFSLGGSVGALVAGVLDGSIFVEGAVPAPPTRRSHTRRGRGARAGVAVPDEGEAEGQDGAKEASISPAXXXXPTSPTSSWPQALRGATGLAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLL 447
BLAST of mRNA_S-dermatodea_contig9336.17383.1 vs. uniprot
Match: A0A4D9DDN3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDN3_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 4.900e-14 Identity = 81/253 (32.02%), Postives = 116/253 (45.85%), Query Frame = 1
Query: 874 EAFVARVGGCDVQCLLMVDASEERLVVAVGDALSGEALMESLIEEPAVVQLASHGLMRETAYVNHAAFQCACDMLEWAGPLIKVSLEAGGPFEGYGVHCAGHSFGGAVAACLAGLLDGAIDPEAEEIERDGARGAEGARRRALRDRDSKDGGGARSVSSE---------------------SSDDEGAVRMEGAAPWVGVCGDKVTCVTLGCPPCLSRNLR--LPFVTSFVLGDDMVPRTSNESLRRLKRRLL 1563
E F++ GG + LL+VD RL ++VGD+L+ ++ L P V L GL+R + VN + A ++E ++ + E Y +H G S GG+V A +AG+LDG I E GA A RR R + G A E SS A + GA G+ D VT PC+S+N+R F TSF+LGDDM+PR + S++RL++RLL
Sbjct: 237 EDFLSVEGGT-FRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPPLTVPLRPRGLLRRSMMVNPRLWAAAATVIERVRAVLTTARET---CPNYALHVVGFSLGGSVGALVAGVLDGTIFVE-------GAVPAPPTRRSHTRRGRAARAGVAVPEEGEXXXXXXXXXXXXXXXXXXXXXSSTSSWAHALRGAT---GLAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLL 475 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9336.17383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9336.17383.1 >prot_S-dermatodea_contig9336.17383.1 ID=prot_S-dermatodea_contig9336.17383.1|Name=mRNA_S-dermatodea_contig9336.17383.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=523bp WERSTGGLWGEMARHHRRLRCWISTFGVGLACWLASAADPLPQQVEHPFRback to top mRNA from alignment at S-dermatodea_contig9336:2756..5796- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9336.17383.1 ID=mRNA_S-dermatodea_contig9336.17383.1|Name=mRNA_S-dermatodea_contig9336.17383.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3041bp|location=Sequence derived from alignment at S-dermatodea_contig9336:2756..5796- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9336:2756..5796- >mRNA_S-dermatodea_contig9336.17383.1 ID=mRNA_S-dermatodea_contig9336.17383.1|Name=mRNA_S-dermatodea_contig9336.17383.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3138bp|location=Sequence derived from alignment at S-dermatodea_contig9336:2756..5796- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |