mRNA_S-dermatodea_contig9331.17380.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9331.17380.1
Unique NamemRNA_S-dermatodea_contig9331.17380.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9331.17380.1 vs. uniprot
Match: D8LKZ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKZ8_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 4.270e-75
Identity = 205/351 (58.40%), Postives = 233/351 (66.38%), Query Frame = 1 
Query:   22 AFNRRHAVSVQYKDRVWEIELNSDHGVG---RDTSSIAFDLQAALNLARPPVGLRLRVAPGTEAVVCPLSVLVACPSFIATTFQGMSWIPLMEGAGDDDV--------AGDDTSSQPPVPTDPLLPPPLGSPLEREVPSLAHCRS-TASPSEGCGRPLTAPPGDRNRGMPRPRPTRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSGSGSPAWGLHSPNGFRCEEN----AEDV---RPATAPAFAAALRRRPSSNLAGSRGNPVRQFGSIPPQRSGEGDVVRGGDGGDGIADEVGGIAS-----------LTLEADSTTGNKSWEGGRAAGPARECWV 984
            +FNR   VSVQY D  W+I+LN         RDT+++A +LQAALNL+ PPVGLRLRVAPG +AV+CPLS ++ACPS+IAT +QGMSW PL+EG GDD          A   T    P   DPLLPPPLGSPL+ E+  LA     TASPSEGCGRPLTAPPGDR RGM RP P RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHS SGSPAWG  SP+GFRCEE     AED    RPATAPA    LRR+PSSNL+GSR N    FG    +R G G  V        + +E GG+A+           L  +  +  G+  W G   AGP RECW 
Sbjct:    2 SFNRGAVVSVQYGDCAWDIKLNLAANTACLERDTATLALELQAALNLSTPPVGLRLRVAPGAQAVICPLSAVIACPSYIATAYQGMSWFPLLEGGGDDHQEAPPNAPPAAPQTQLPAPPSDDPLLPPPLGSPLDHELSFLATGGGFTASPSEGCGRPLTAPPGDRTRGMTRPHPGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSHSGSPAWG--SPHGFRCEETTTTTAEDAGARRPATAPA----LRRQPSSNLSGSR-NENGVFG----ERFGRGGSVE-------VNEETGGVAAAHHRPMPDGGGLGGDGRAVGGDVDW-GWCGAGPTRECWA 333
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9331.17380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKZ8_ECTSI4.270e-7558.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9331contigS-dermatodea_contig9331:2038..3024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_006150.1
Exons1
Model size987
Cds size987
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925401.0680697-CDS-S-dermatodea_contig9331:2037..30241622925401.0680697-CDS-S-dermatodea_contig9331:2037..3024Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9331 2038..3024 -
1694079908.396317-CDS-S-dermatodea_contig9331:2037..30241694079908.396317-CDS-S-dermatodea_contig9331:2037..3024Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9331 2038..3024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9331.17380.1prot_S-dermatodea_contig9331.17380.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9331 2038..3024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9331.17380.1

>prot_S-dermatodea_contig9331.17380.1 ID=prot_S-dermatodea_contig9331.17380.1|Name=mRNA_S-dermatodea_contig9331.17380.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=329bp
MFGANLDAFNRRHAVSVQYKDRVWEIELNSDHGVGRDTSSIAFDLQAALN
LARPPVGLRLRVAPGTEAVVCPLSVLVACPSFIATTFQGMSWIPLMEGAG
DDDVAGDDTSSQPPVPTDPLLPPPLGSPLEREVPSLAHCRSTASPSEGCG
RPLTAPPGDRNRGMPRPRPTRREGLGRPMSATPSDKSFGMRRLRPGKSEG
FGRPVTALPSDHSGSGSPAWGLHSPNGFRCEENAEDVRPATAPAFAAALR
RRPSSNLAGSRGNPVRQFGSIPPQRSGEGDVVRGGDGGDGIADEVGGIAS
LTLEADSTTGNKSWEGGRAAGPARECWV*
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mRNA from alignment at S-dermatodea_contig9331:2038..3024-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9331.17380.1 ID=mRNA_S-dermatodea_contig9331.17380.1|Name=mRNA_S-dermatodea_contig9331.17380.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=987bp|location=Sequence derived from alignment at S-dermatodea_contig9331:2038..3024- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCGGTGCCAATCTCGACGCGTTCAACCGCCGCCACGCGGTTTCGGT
GCAGTACAAGGACCGCGTGTGGGAAATCGAGCTCAACTCGGATCATGGTG
TCGGTCGCGATACGTCGTCAATCGCTTTCGACCTGCAGGCCGCCCTCAAC
CTCGCCAGACCTCCGGTCGGCCTTCGCCTCCGCGTGGCGCCGGGCACCGA
AGCGGTCGTGTGTCCCCTTAGCGTTCTCGTGGCCTGCCCTTCGTTCATCG
CGACCACGTTTCAAGGCATGTCGTGGATCCCTCTCATGGAAGGGGCGGGC
GACGATGACGTAGCCGGCGACGATACATCCAGTCAGCCGCCAGTGCCAAC
AGACCCCCTGCTACCGCCACCGCTAGGGTCGCCGCTAGAACGCGAGGTGC
CGTCGCTGGCGCACTGCCGATCCACCGCGTCGCCCTCGGAAGGTTGTGGC
CGTCCACTCACGGCCCCGCCCGGCGATCGGAATCGGGGCATGCCTCGACC
ACGCCCCACACGGCGCGAAGGCCTGGGCAGGCCCATGTCAGCCACGCCCA
GCGACAAGTCGTTCGGGATGCGGCGACTCCGCCCGGGCAAGAGCGAGGGC
TTCGGGAGGCCTGTCACCGCGTTGCCTAGCGACCACAGCGGCAGTGGCAG
TCCAGCGTGGGGCCTGCACAGCCCTAACGGCTTCCGGTGTGAGGAGAACG
CGGAGGATGTTCGCCCGGCCACGGCGCCTGCGTTCGCGGCTGCTTTGCGC
CGGCGCCCGTCGTCGAACCTTGCTGGCTCGCGAGGAAATCCCGTGCGTCA
GTTCGGTTCCATTCCGCCGCAGCGGTCAGGTGAAGGGGACGTTGTTCGAG
GGGGGGATGGCGGTGATGGGATCGCGGATGAGGTGGGCGGGATTGCAAGT
CTTACGCTGGAGGCCGACAGTACTACCGGAAACAAAAGCTGGGAAGGGGG
TAGAGCGGCAGGGCCAGCGCGAGAGTGTTGGGTGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9331:2038..3024-

>mRNA_S-dermatodea_contig9331.17380.1 ID=mRNA_S-dermatodea_contig9331.17380.1|Name=mRNA_S-dermatodea_contig9331.17380.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1974bp|location=Sequence derived from alignment at S-dermatodea_contig9331:2038..3024- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCGGTGCCAATCTCGACGCGTTCAACCGCCGCCACGCGGTTTCGGT
GCAGTACAAGGACCGCGTGTGGGAAATCGAGCTCAACTCGGATCATGGTG
TCGGTCGCGATACGTCGTCAATCGCTTTCGACCTGCAGGCCGCCCTCAAC
CTCGCCAGACCTCCGGTCGGCCTTCGCCTCCGCGTGGCGCCGGGCACCGA
AGCGGTCGTGTGTCCCCTTAGCGTTCTCGTGGCCTGCCCTTCGTTCATCG
CGACCACGTTTCAAGGCATGTCGTGGATCCCTCTCATGGAAGGGGCGGGC
GACGATGACGTAGCCGGCGACGATACATCCAGTCAGCCGCCAGTGCCAAC
AGACCCCCTGCTACCGCCACCGCTAGGGTCGCCGCTAGAACGCGAGGTGC
CGTCGCTGGCGCACTGCCGATCCACCGCGTCGCCCTCGGAAGGTTGTGGC
CGTCCACTCACGGCCCCGCCCGGCGATCGGAATCGGGGCATGCCTCGACC
ACGCCCCACACGGCGCGAAGGCCTGGGCAGGCCCATGTCAGCCACGCCCA
GCGACAAGTCGTTCGGGATGCGGCGACTCCGCCCGGGCAAGAGCGAGGGC
TTCGGGAGGCCTGTCACCGCGTTGCCTAGCGACCACAGCGGCAGTGGCAG
TCCAGCGTGGGGCCTGCACAGCCCTAACGGCTTCCGGTGTGAGGAGAACG
CGGAGGATGTTCGCCCGGCCACGGCGCCTGCGTTCGCGGCTGCTTTGCGC
CGGCGCCCGTCGTCGAACCTTGCTGGCTCGCGAGGAAATCCCGTGCGTCA
GTTCGGTTCCATTCCGCCGCAGCGGTCAGGTGAAGGGGACGTTGTTCGAG
GGGGGGATGGCGGTGATGGGATCGCGGATGAGGTGGGCGGGATTGCAAGT
CTTACGCTGGAGGCCGACAGTACTACCGGAAACAAAAGCTGGGAAGGGGG
TAGAGCGGCAGGGCCAGCGCGAGAGTGTTGGGTGTGAATGTTCGGTGCCA
ATCTCGACGCGTTCAACCGCCGCCACGCGGTTTCGGTGCAGTACAAGGAC
CGCGTGTGGGAAATCGAGCTCAACTCGGATCATGGTGTCGGTCGCGATAC
GTCGTCAATCGCTTTCGACCTGCAGGCCGCCCTCAACCTCGCCAGACCTC
CGGTCGGCCTTCGCCTCCGCGTGGCGCCGGGCACCGAAGCGGTCGTGTGT
CCCCTTAGCGTTCTCGTGGCCTGCCCTTCGTTCATCGCGACCACGTTTCA
AGGCATGTCGTGGATCCCTCTCATGGAAGGGGCGGGCGACGATGACGTAG
CCGGCGACGATACATCCAGTCAGCCGCCAGTGCCAACAGACCCCCTGCTA
CCGCCACCGCTAGGGTCGCCGCTAGAACGCGAGGTGCCGTCGCTGGCGCA
CTGCCGATCCACCGCGTCGCCCTCGGAAGGTTGTGGCCGTCCACTCACGG
CCCCGCCCGGCGATCGGAATCGGGGCATGCCTCGACCACGCCCCACACGG
CGCGAAGGCCTGGGCAGGCCCATGTCAGCCACGCCCAGCGACAAGTCGTT
CGGGATGCGGCGACTCCGCCCGGGCAAGAGCGAGGGCTTCGGGAGGCCTG
TCACCGCGTTGCCTAGCGACCACAGCGGCAGTGGCAGTCCAGCGTGGGGC
CTGCACAGCCCTAACGGCTTCCGGTGTGAGGAGAACGCGGAGGATGTTCG
CCCGGCCACGGCGCCTGCGTTCGCGGCTGCTTTGCGCCGGCGCCCGTCGT
CGAACCTTGCTGGCTCGCGAGGAAATCCCGTGCGTCAGTTCGGTTCCATT
CCGCCGCAGCGGTCAGGTGAAGGGGACGTTGTTCGAGGGGGGGATGGCGG
TGATGGGATCGCGGATGAGGTGGGCGGGATTGCAAGTCTTACGCTGGAGG
CCGACAGTACTACCGGAAACAAAAGCTGGGAAGGGGGTAGAGCGGCAGGG
CCAGCGCGAGAGTGTTGGGTGTGA
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