mRNA_S-dermatodea_contig933.17378.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig933.17378.1
Unique NamemRNA_S-dermatodea_contig933.17378.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig933.17378.1 vs. uniprot
Match: D7G7I4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7I4_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 2.270e-42
Identity = 79/134 (58.96%), Postives = 108/134 (80.60%), Query Frame = 1 
Query:   91 MLNERQKRVIIDRVNEDVDLPLLSEEREERMIQKMMGKVEPHVEPALGRLMPEVYLTCIKLALNEKLHIKERRKLISRLLRGELAEPLSRELNERVDIRFVPERMEGMLLKVVANKIIEEFVEWTVCGVDDFLK 492
            MLNERQ+ V++ +VN+D+D+PLLSE RE R+I+K + K+ P VEP++  +MP+VY+ CIK AL+E   IK RRK IS LLRGEL+EPL+R+LNERVD   +PE+ EG +LK+V+NK+I+EFVEWTV  VD+ L+
Sbjct:    1 MLNERQRAVMVRKVNDDLDIPLLSESRERRLIEKFVDKIMPKVEPSMQAIMPDVYVRCIKKALDETETIKNRRKHISTLLRGELSEPLTRQLNERVDCSGIPEKWEGKVLKLVSNKVIDEFVEWTVGEVDERLR 134
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BLAST of mRNA_S-dermatodea_contig933.17378.1 vs. uniprot
Match: A0A6H5JSA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA3_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.730e-30
Identity = 64/122 (52.46%), Postives = 89/122 (72.95%), Query Frame = 1 
Query:   91 MLNERQKRVIIDRVNEDVDLPLLSEEREERMIQKMMGKVEPHVEPALGRLMPEVYLTCIKLALNEKLHIKERRKLISRLLRGELAEPLSRELNERVDIRFVPERMEGMLLKVVANKIIEEFV 456
            MLN++QK  +ID VN D D+PL+SE RE  +I+K + +  P +EP+L  LMP  Y+  +K+AL+E L   ER++ +S LLRGELA PLS++LNERVD  ++PE MEG +LKVVA K++ E V
Sbjct:    1 MLNDKQKHDVIDAVNVDFDIPLISEGRERGIIEKFVDQAVPAMEPSLSALMPPAYMDLVKVALDETLTAAERKERMSELLRGELAVPLSKQLNERVDCSYIPESMEGKVLKVVAEKMVNEIV 122
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BLAST of mRNA_S-dermatodea_contig933.17378.1 vs. uniprot
Match: D7G7I3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I3_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 3.100e-30
Identity = 63/123 (51.22%), Postives = 90/123 (73.17%), Query Frame = 1 
Query:   88 SMLNERQKRVIIDRVNEDVDLPLLSEEREERMIQKMMGKVEPHVEPALGRLMPEVYLTCIKLALNEKLHIKERRKLISRLLRGELAEPLSRELNERVDIRFVPERMEGMLLKVVANKIIEEFV 456
            +MLN++QK  +ID VN D+D+PL+SE RE R I+K + +  P +EP+L  LMP  Y+  +K+ L+E L   ER++ ++ LLRGELA PLSR+LNERVD  ++PE MEG +LK+VA K++ E V
Sbjct:   37 AMLNDKQKHDVIDAVNVDIDIPLVSEGRERRAIEKFVDQAVPAMEPSLSALMPPAYVDLVKVVLDETLAAAERKERMAELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEIV 159
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BLAST of mRNA_S-dermatodea_contig933.17378.1 vs. uniprot
Match: A0A6H5JD72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD72_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.560e-29
Identity = 64/122 (52.46%), Postives = 88/122 (72.13%), Query Frame = 1 
Query:   91 MLNERQKRVIIDRVNEDVDLPLLSEEREERMIQKMMGKVEPHVEPALGRLMPEVYLTCIKLALNEKLHIKERRKLISRLLRGELAEPLSRELNERVDIRFVPERMEGMLLKVVANKIIEEFV 456
            MLN++QK  +ID VN D D+PLLSE  E R I+  + +  P +EP+L  LMP  Y+  +K+AL+E L   ER++ +S LLRGELA PLS++LNERVD+ ++PE MEG +LKVVA K++ E V
Sbjct:   56 MLNDKQKHDVIDAVNVDFDIPLLSEGIERRFIENFVDQAVPAMEPSLSALMPPAYVDLVKVALDETLTAAERKECMSALLRGELAVPLSKQLNERVDVSYIPESMEGKVLKVVAEKMVNEIV 177
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BLAST of mRNA_S-dermatodea_contig933.17378.1 vs. uniprot
Match: A0A1X6P3R0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3R0_PORUM)

HSP 1 Score: 109 bits (273), Expect = 1.730e-24
Identity = 53/120 (44.17%), Postives = 88/120 (73.33%), Query Frame = 1 
Query:   91 MLNERQKRVIIDRVNEDVDLPLLSEEREERMIQKMMGKVEPHVEPALGRLMPEVYLTCIKLALNEKLHIKERRKLISRLLRGELAEPLSRELNERVDIRFVPERMEGMLLKVVANKIIEE 450
            ML+ERQK V++ + NE++DLP +SE RE R I+K++ ++ P +EPAL + MP++ +  I+L L+E+  +KERR+ +  L+  + AEPL+  LNERVD+ F+PER E ++L+ V  ++++E
Sbjct:    1 MLSERQKEVVVRKANEEIDLPFVSERRESRAIEKVVERLNPELEPALLQFMPKINVEMIRLLLDERKSVKERRERLVDLVLEQAAEPLTAALNERVDVAFLPERAESVVLRKVVERMLKE 120
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig933.17378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G7I4_ECTSI2.270e-4258.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JSA3_9PHAE2.730e-3052.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7I3_ECTSI3.100e-3051.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD72_9PHAE2.560e-2952.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1X6P3R0_PORUM1.730e-2444.17Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig933contigS-dermatodea_contig933:18835..22009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1732
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig933.17378.1prot_S-dermatodea_contig933.17378.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig933 18868..20790 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925400.9400485-UTR-S-dermatodea_contig933:18834..188671622925400.9400485-UTR-S-dermatodea_contig933:18834..18867Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig933 18835..18867 +
1694079908.3148327-UTR-S-dermatodea_contig933:18834..188671694079908.3148327-UTR-S-dermatodea_contig933:18834..18867Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig933 18835..18867 +
1622925400.9760911-UTR-S-dermatodea_contig933:20790..220091622925400.9760911-UTR-S-dermatodea_contig933:20790..22009Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig933 20791..22009 +
1694079908.354687-UTR-S-dermatodea_contig933:20790..220091694079908.354687-UTR-S-dermatodea_contig933:20790..22009Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig933 20791..22009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925400.9532053-CDS-S-dermatodea_contig933:18867..189181622925400.9532053-CDS-S-dermatodea_contig933:18867..18918Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig933 18868..18918 +
1694079908.3256528-CDS-S-dermatodea_contig933:18867..189181694079908.3256528-CDS-S-dermatodea_contig933:18867..18918Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig933 18868..18918 +
1622925400.9663105-CDS-S-dermatodea_contig933:20361..207901622925400.9663105-CDS-S-dermatodea_contig933:20361..20790Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig933 20362..20790 +
1694079908.3393734-CDS-S-dermatodea_contig933:20361..207901694079908.3393734-CDS-S-dermatodea_contig933:20361..20790Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig933 20362..20790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig933.17378.1

>prot_S-dermatodea_contig933.17378.1 ID=prot_S-dermatodea_contig933.17378.1|Name=mRNA_S-dermatodea_contig933.17378.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=160bp
MSDDTPLAREGPESSAQVSMLNERQKRVIIDRVNEDVDLPLLSEEREERM
IQKMMGKVEPHVEPALGRLMPEVYLTCIKLALNEKLHIKERRKLISRLLR
GELAEPLSRELNERVDIRFVPERMEGMLLKVVANKIIEEFVEWTVCGVDD
FLKEDCESA*
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mRNA from alignment at S-dermatodea_contig933:18835..22009+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig933.17378.1 ID=mRNA_S-dermatodea_contig933.17378.1|Name=mRNA_S-dermatodea_contig933.17378.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3175bp|location=Sequence derived from alignment at S-dermatodea_contig933:18835..22009+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGCAAAAGAAGGGCATCTCTTCTTGCCTCGCCATGAGTGATGACACCCC
CCTCGCCCGCGAAGGACCCGAGTCTTCAGCCCAGGCAAGTGGTTGTTTTT
CTGTTTTGGGCGCTTCGTCGTTGTTTTATTTCATATTCAGACTACAGCAG
TACAGAGTATGGGCTTGCAAGATGGCTGTCGTCCTGTATTCTGTTGTGAT
AGGTTCCAGCCTAGATGCGAAGACTATCTCCAACCCGACCACGAGGCTAT
CAACAGCTGATCCCATGGCCACACCCTAAGCCTAACTCCCGAGACAGCAG
TCATCACATGCTTCCTGAGACAAAAGTGTGTGCCGCCAGGTTGAGACTGA
AGGCTGCCAAAGGTGCCTGCTGTGACAGTTCCGCGTGGCTATTATTGCGC
CTAGTTGTGGCATCGGGGCTGGTTCGGGCGAATGTGCTATGTGTTGCTTG
TATTGTCTTAGGTGCTATTTGCTCTTACACATATCGCTGGTGTTGACTGT
TCTCGTTGGATGAGCTATGCGAGCGTCTGCCGTGTGGTAGACAAAAGCTT
GACCCTACTAACTCCTCCTTCTACAGACGTCGGAGCCTGAAAAGCGGTGC
ATCTTACACACTTGTTTTTGTTCCGTATTTATTTTATCTGTAGACCACAC
AACTGTAGTCTTACAACCAGTACAACCGATGCTATTGCGCGTTGCTGTCA
AATATTTGACAAGTCGGACAGATGTACTTCATCTTCCAGCAAGTCCCTGG
AAACTACTGCTGCTGTAATCAGCATCCAGGCACGGTGTTCGTGCATTCAG
CAGGGGTCTTGTTTGTGGCCAGCGTACTCCGCTGACAACGTTGTATGGCA
ACCTGCTCGATTGAGTGCCTCGGGTGTCTGTGCTCCCCGCGTATGGAGCC
TTGCAGTCACTGCAGCCCAAGAGCGATGTCGAAGCCGCCGCTTGATGGAC
CCTGGGGGGCCGCTTGCGCTGCTGCGTATGGCGTCTGGCGTCTGGCGGCC
CGCCCTCGTTCCGGCGAGAATTCTTGTTCTCTGGTTCTCCGTTGGAGAAC
AGTAGTACCAGACCGCCCTTGCCAGTGCGAGGGTATCACACGGACGCATA
CAGCGTGATCATGCAGTGCGACGGTGGGGCAACTTCCAGACATAAGCACA
GAATACAACACCATGAGGCAGTATTTCACACAAAATATGACGCTAACCTG
CACGTTGAAGTACATCTGCGATCCAGTGCCCATTTTTGTTGGAAAGGTCG
GGAGGTTCACGGACGCTCAATCCCCACATTTTTTGTTGGGGGGGACGGGA
CGTTTGTGTTATATTCCTCAGACCCTCTTCCTCCAATCCCACTAAAGCAT
TCTTAACGAAGTACCACCCGCAGCCGAAACCCCGAACGAACCTTCCAAAC
CCATTTGCGCTTAAGTTGTACTGCCTTCGCCTTGCAATGACCATACTCCC
GCACTTTCTCCGCCCATTGTGCCCGTGAACTGGACGGGCGCGCGCGGTCC
GAAAAACGTCCTGACACGAAACACAAGGTCAGCATGCTGAACGAGCGTCA
GAAAAGGGTGATAATTGACCGCGTTAACGAGGATGTGGATCTGCCCTTAC
TCTCCGAGGAAAGGGAGGAGCGCATGATTCAAAAAATGATGGGCAAGGTC
GAGCCGCACGTCGAACCCGCCCTAGGACGACTTATGCCCGAAGTTTACTT
GACATGCATCAAGCTCGCGTTGAACGAGAAGCTACACATCAAAGAACGGA
GAAAGCTCATCTCCAGATTGCTGCGCGGCGAGCTGGCGGAACCACTCTCG
AGGGAACTTAACGAGCGCGTGGACATCCGATTTGTCCCCGAACGGATGGA
GGGCATGTTGCTTAAGGTCGTCGCTAACAAGATCATCGAGGAGTTTGTCG
AGTGGACCGTCTGTGGAGTCGACGATTTTCTGAAAGAGGATTGCGAGTCC
GCGTAAGCCACGCGAAGATCTTGCGATCGGCCCTCCCATTTTCGTAGCCG
TTGTGTTCCCCAGCATCGTCCAGGCGTATGTGACGAAAGGAGTGGCATGG
GTAGCGTTAGGCGAGGCTATCCGTTGCATGACTCAAGAAACAAAATTCCG
TAGGGCGCGGATTATAGTAGTATAGTGTGATCGATACAGTAGACAGCTTA
TGTCTTTGCAGCTTCTCCAGATAATTGAAAACACGGGCAGGTTACCGTAG
TCCCTGAGAACGCTGTGGTTGGCCCCCGGCACACATCATCAACATCTCGG
GTGTGTTCGGTACATTTTATTTCTAGCGTGAACGCAGAGTTCACAGCGTA
TGCGTGGGGAGCTCCTGGACCTAGATGGTATTCACAGGTAAGTACAGGCC
CTGGTTCCCCGCATGGTATGTGGGTCTTTGTAGCCATGCTACGATGGGGA
GGGGGGATTTTGAGCCGGTTGACTGCACGAACTGGGCCGGTGTAGAGAGC
AGCTCATTATTCTTCTCTCTGCTATGACAAATTGTCCAATATTTTTCTCG
GGCATAGGTTCACTTTGGCGAGGGACGTACATGCCAACCCGAAAAGAGGC
ATTCAACGTGGGTTTTGGGGCCGTTTTCGCGGTTGCTTCTCATGCAATAA
AAGCGTGTCCCTGGTCGTAGAATGTCGCGTTGGTGGCTCGATGGGATCCC
GTTCAATATGCGTGTAAGCGAGTTGAAGGAATTTGCTAGGTTAGCGCCGA
TGTTTTTGTGTATGCGCTCTCTATGCCGTAGCCCCTTAGCGCGTGTTGCA
CCCAGGCCCGTTTTATACTCTGCCCAGAAACGGTTCGTGTCAGGTGTACC
CACTATGTAGTATTGCGGTGTGGTGTTCCGGGCGTAAAGGGTGTGCCAGG
TAAAGGTACTGTTTGTGTGTGTCGGGGGCATTGGCAGACGTTGGTCGCCA
TGCATGTGGTGTGCGTTTGCCCAGCATCAGGCTAAACGAGATGGTACCGA
GTTGCTTGTGGAATGTATGGGCAAGTAAGTTTGCATGTATATGCCGCGGT
CTTGCGATCGGCAGATACACGCCATGACGCCGTCAGCTGACAGCCTTTTC
GGTGTGTATTAACACAGCTTGGACCCTGCCAACCAGAATAATATTTGATC
AATTTTGAAGCCGAAATAAAGTGGACGAATTTCCGCTCGGACCTGTTGGG
CCTACCTGTTATCAAGACATCAGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig933:18835..22009+

>mRNA_S-dermatodea_contig933.17378.1 ID=mRNA_S-dermatodea_contig933.17378.1|Name=mRNA_S-dermatodea_contig933.17378.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at S-dermatodea_contig933:18835..22009+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGTGATGACACCCCCCTCGCCCGCGAAGGACCCGAGTCTTCAGCCCA
GATGAGTGATGACACCCCCCTCGCCCGCGAAGGACCCGAGTCTTCAGCCC
AGGTCAGCATGCTGAACGAGCGTCAGAAAAGGGTGATAATTGACCGCGTT
AACGAGGATGTGGATCTGCCCTTACTCTCCGAGGAAAGGGAGGAGCGCAT
GATTCAAAAAATGATGGGCAAGGTCGAGCCGCACGTCGAACCCGCCCTAG
GACGACTTATGCCCGAAGTTTACTTGACATGCATCAAGCTCGCGTTGAAC
GAGAAGCTACACATCAAAGAACGGAGAAAGCTCATCTCCAGATTGCTGCG
CGGCGAGCTGGCGGAACCACTCTCGAGGGAACTTAACGAGCGCGTGGACA
TCCGATTTGTCCCCGAACGGATGGAGGGCATGTTGCTTAAGGTCGTCGCT
AACAAGATCATCGAGGAGTTTGTCGAGTGGACCGTCTGTGGAGTCGACGA
TTTTCTGAAAGAGGATTGCGAGTCCGCGTAAGTCAGCATGCTGAACGAGC
GTCAGAAAAGGGTGATAATTGACCGCGTTAACGAGGATGTGGATCTGCCC
TTACTCTCCGAGGAAAGGGAGGAGCGCATGATTCAAAAAATGATGGGCAA
GGTCGAGCCGCACGTCGAACCCGCCCTAGGACGACTTATGCCCGAAGTTT
ACTTGACATGCATCAAGCTCGCGTTGAACGAGAAGCTACACATCAAAGAA
CGGAGAAAGCTCATCTCCAGATTGCTGCGCGGCGAGCTGGCGGAACCACT
CTCGAGGGAACTTAACGAGCGCGTGGACATCCGATTTGTCCCCGAACGGA
TGGAGGGCATGTTGCTTAAGGTCGTCGCTAACAAGATCATCGAGGAGTTT
GTCGAGTGGACCGTCTGTGGAGTCGACGATTTTCTGAAAGAGGATTGCGA
GTCCGCGTAA
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