mRNA_S-dermatodea_contig933.17377.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig933.17377.1
Unique NamemRNA_S-dermatodea_contig933.17377.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig933.17377.1 vs. uniprot
Match: D7G7I4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7I4_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 2.350e-43
Identity = 80/142 (56.34%), Postives = 106/142 (74.65%), Query Frame = 2 
Query:  134 MLNERQKQVLIERLNDDVDLPLLSEEREERIIENLVDKVNPHVEPALGLLLPEIYLTCIKLALNEELHIKERRKRITKMLRDELAGPLARELNERVDLSHFPERLEGVVLKIVAKKIIGEFVEWTVGAVDGYLNEEEGSESS 559
            MLNERQ+ V++ ++NDD+D+PLLSE RE R+IE  VDK+ P VEP++  ++P++Y+ CIK AL+E   IK RRK I+ +LR EL+ PL R+LNERVD S  PE+ EG VLK+V+ K+I EFVEWTVG VD  L    GS+ S
Sbjct:    1 MLNERQRAVMVRKVNDDLDIPLLSESRERRLIEKFVDKIMPKVEPSMQAIMPDVYVRCIKKALDETETIKNRRKHISTLLRGELSEPLTRQLNERVDCSGIPEKWEGKVLKLVSNKVIDEFVEWTVGEVDERLRVVPGSDRS 142
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BLAST of mRNA_S-dermatodea_contig933.17377.1 vs. uniprot
Match: A0A2V3J618_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J618_9FLOR)

HSP 1 Score: 123 bits (309), Expect = 1.160e-30
Identity = 60/130 (46.15%), Postives = 95/130 (73.08%), Query Frame = 2 
Query:  134 MLNERQKQVLIERLNDDVDLPLLSEEREERIIENLVDKVNPHVEPALGLLLPEIYLTCIKLALNEELHIKERRKRITKMLRDELAGPLARELNERVDLSHFPERLEGVVLKIVAKKIIGEFVEWTVGAVD 523
            ML+E QK+V+  R+N + D+P L E  E+R+I+++++ +NPH+EPAL  + P  Y+ CIK+AL E +  +ERR +I+ +LR++L  PLA +LN ++D++  PE +E  VL++ AKKI+ EFVEWTV  +D
Sbjct:    1 MLSENQKEVIKNRINAETDIPFLRESTEDRVIKSVIETLNPHIEPALRQICPTPYVDCIKIALTEGIPTEERRLQISAILREQLVDPLADQLNGKLDMALIPESMELRVLEVFAKKIVDEFVEWTVAEID 130
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BLAST of mRNA_S-dermatodea_contig933.17377.1 vs. uniprot
Match: A0A6H5JSA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA3_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 7.770e-29
Identity = 61/122 (50.00%), Postives = 91/122 (74.59%), Query Frame = 2 
Query:  134 MLNERQKQVLIERLNDDVDLPLLSEEREERIIENLVDKVNPHVEPALGLLLPEIYLTCIKLALNEELHIKERRKRITKMLRDELAGPLARELNERVDLSHFPERLEGVVLKIVAKKIIGEFV 499
            MLN++QK  +I+ +N D D+PL+SE RE  IIE  VD+  P +EP+L  L+P  Y+  +K+AL+E L   ER++R++++LR ELA PL+++LNERVD S+ PE +EG VLK+VA+K++ E V
Sbjct:    1 MLNDKQKHDVIDAVNVDFDIPLISEGRERGIIEKFVDQAVPAMEPSLSALMPPAYMDLVKVALDETLTAAERKERMSELLRGELAVPLSKQLNERVDCSYIPESMEGKVLKVVAEKMVNEIV 122
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BLAST of mRNA_S-dermatodea_contig933.17377.1 vs. uniprot
Match: D7G7I3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I3_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 8.260e-29
Identity = 62/122 (50.82%), Postives = 90/122 (73.77%), Query Frame = 2 
Query:  134 MLNERQKQVLIERLNDDVDLPLLSEEREERIIENLVDKVNPHVEPALGLLLPEIYLTCIKLALNEELHIKERRKRITKMLRDELAGPLARELNERVDLSHFPERLEGVVLKIVAKKIIGEFV 499
            MLN++QK  +I+ +N D+D+PL+SE RE R IE  VD+  P +EP+L  L+P  Y+  +K+ L+E L   ER++R+ ++LR ELA PL+R+LNERVD S+ PE +EG VLKIVA+K++ E V
Sbjct:   38 MLNDKQKHDVIDAVNVDIDIPLVSEGRERRAIEKFVDQAVPAMEPSLSALMPPAYVDLVKVVLDETLAAAERKERMAELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEIV 159
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BLAST of mRNA_S-dermatodea_contig933.17377.1 vs. uniprot
Match: A0A6H5JD72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD72_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.750e-27
Identity = 61/122 (50.00%), Postives = 90/122 (73.77%), Query Frame = 2 
Query:  134 MLNERQKQVLIERLNDDVDLPLLSEEREERIIENLVDKVNPHVEPALGLLLPEIYLTCIKLALNEELHIKERRKRITKMLRDELAGPLARELNERVDLSHFPERLEGVVLKIVAKKIIGEFV 499
            MLN++QK  +I+ +N D D+PLLSE  E R IEN VD+  P +EP+L  L+P  Y+  +K+AL+E L   ER++ ++ +LR ELA PL+++LNERVD+S+ PE +EG VLK+VA+K++ E V
Sbjct:   56 MLNDKQKHDVIDAVNVDFDIPLLSEGIERRFIENFVDQAVPAMEPSLSALMPPAYVDLVKVALDETLTAAERKECMSALLRGELAVPLSKQLNERVDVSYIPESMEGKVLKVVAEKMVNEIV 177
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BLAST of mRNA_S-dermatodea_contig933.17377.1 vs. uniprot
Match: A0A1X6P3R0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3R0_PORUM)

HSP 1 Score: 107 bits (268), Expect = 1.200e-24
Identity = 54/120 (45.00%), Postives = 87/120 (72.50%), Query Frame = 2 
Query:  134 MLNERQKQVLIERLNDDVDLPLLSEEREERIIENLVDKVNPHVEPALGLLLPEIYLTCIKLALNEELHIKERRKRITKMLRDELAGPLARELNERVDLSHFPERLEGVVLKIVAKKIIGE 493
            ML+ERQK+V++ + N+++DLP +SE RE R IE +V+++NP +EPAL   +P+I +  I+L L+E   +KERR+R+  ++ ++ A PL   LNERVD++  PER E VVL+ V ++++ E
Sbjct:    1 MLSERQKEVVVRKANEEIDLPFVSERRESRAIEKVVERLNPELEPALLQFMPKINVEMIRLLLDERKSVKERRERLVDLVLEQAAEPLTAALNERVDVAFLPERAESVVLRKVVERMLKE 120
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig933.17377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G7I4_ECTSI2.350e-4356.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2V3J618_9FLOR1.160e-3046.15Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A6H5JSA3_9PHAE7.770e-2950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7I3_ECTSI8.260e-2950.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD72_9PHAE2.750e-2750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1X6P3R0_PORUM1.200e-2445.00Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig933contigS-dermatodea_contig933:2300..5748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1114
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig933.17377.1prot_S-dermatodea_contig933.17377.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig933 2373..5196 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925400.8632028-UTR-S-dermatodea_contig933:2299..23721622925400.8632028-UTR-S-dermatodea_contig933:2299..2372Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig933 2300..2372 +
1694079908.2709188-UTR-S-dermatodea_contig933:2299..23721694079908.2709188-UTR-S-dermatodea_contig933:2299..2372Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig933 2300..2372 +
1622925400.8964977-UTR-S-dermatodea_contig933:5196..57481622925400.8964977-UTR-S-dermatodea_contig933:5196..5748Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig933 5197..5748 +
1694079908.3041348-UTR-S-dermatodea_contig933:5196..57481694079908.3041348-UTR-S-dermatodea_contig933:5196..5748Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig933 5197..5748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925400.8766036-CDS-S-dermatodea_contig933:2372..24261622925400.8766036-CDS-S-dermatodea_contig933:2372..2426Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig933 2373..2426 +
1694079908.2820466-CDS-S-dermatodea_contig933:2372..24261694079908.2820466-CDS-S-dermatodea_contig933:2372..2426Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig933 2373..2426 +
1622925400.88644-CDS-S-dermatodea_contig933:4761..51961622925400.88644-CDS-S-dermatodea_contig933:4761..5196Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig933 4762..5196 +
1694079908.293128-CDS-S-dermatodea_contig933:4761..51961694079908.293128-CDS-S-dermatodea_contig933:4761..5196Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig933 4762..5196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig933.17377.1

>prot_S-dermatodea_contig933.17377.1 ID=prot_S-dermatodea_contig933.17377.1|Name=mRNA_S-dermatodea_contig933.17377.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=163bp
MSDDGCLAREEPLEPSTQVGMLNERQKQVLIERLNDDVDLPLLSEEREER
IIENLVDKVNPHVEPALGLLLPEIYLTCIKLALNEELHIKERRKRITKML
RDELAGPLARELNERVDLSHFPERLEGVVLKIVAKKIIGEFVEWTVGAVD
GYLNEEEGSESS*
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mRNA from alignment at S-dermatodea_contig933:2300..5748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig933.17377.1 ID=mRNA_S-dermatodea_contig933.17377.1|Name=mRNA_S-dermatodea_contig933.17377.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3449bp|location=Sequence derived from alignment at S-dermatodea_contig933:2300..5748+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCACAAACACACACACACACACACCTACACATCGGCTACTACGGGGGAG
GAGAACCTCTCTTCTTGCTCAATATGAGTGATGACGGCTGCCTCGCCCGC
GAAGAACCGCTCGAGCCTTCAACCCAGGCAAGCTGACGTTTTGTTTATAG
GACGCTTCGATCGTGCTTGTACGCATGATAGTATACTCTGTATATTATGT
TGAGATATATCTATAGACGACGACCCGACCGGCTCCATGCCGATCACACC
CCTATGGGCCCAACTATGGGCCCAAGGCGCCAAAGTACCCCCAAATCTCC
TACATCGATATAAGTGTGCGGATTTTATCGCGCATTGGGTTCGTTCAGCC
CTTTTAAGTCTCTTGGCATATTTCCTCCGATTTTGCTTTGACTTCCACTC
GCTCGCCCGCCCTCGGACGGCGGCAGAGCATATATAATATTTTAAAGAGT
ATATACTTATTTTTCGGTCCGGATTTCACTACATTGTACTGATAAGTAGT
GATACGTGCGGCAATATATCATATAGCTCTAAAGATGAATCGAGACGCAT
TGCCTCACGGCTGTCCTGCAAACAATTGTACTACCGCAGTAGCAATATAT
CATATTAATATCGTCTGTCTGAAGGCCCCAGCCTACGGTTTTAGGCCCAA
CGCGACGACGAGCATGGTACCCGCTGAGCCCATGACCACAGCCTGACCCT
AATGCCCGAGAGAGCCATGCATGCTGACTGCGTGTCGCCGGGTTGGAGGC
GCGCAGCTGTCAACGGCAACGGTGCCTGCGCTGACAGTTCAGCGTGCCTA
TTGTTGGGCCTAGTTGTGGCATCGGGGCGGGTTCCGACCAAGTGCCCGAT
ATGAATTATGGACCTAGGTGCGGTCTGCTGTTGGTGTCGCTGGTGTTCGG
TACTGGTGTTCTTTTTGCGTGCACTATGCGCGACTCTACCGTAAGTCACG
TGACCCAACTACTACTGGTGCAACACCTCTTCTCCAGATGTCGGACAGAG
CCTGAAAGGCGGTGCATCTTTGTGCATATATTATGCATATATTATGTACG
TTGTCATAAAATCATTTGACAAAGCAGACATACGGACGCAAGCGGTATTT
CGTCTTCGGAAAGTCTCCAAGCCGAATCTGTACTTCTTGTAGCCAGGTCT
CTCTTGTTTGTGGATGCAGGAGGGGCAATTTTGTTTCTGACAGGCATACT
ATTATGCTGTCACGGTGTATGGTAACCTTCTCCATTGAAGTGTATCGGGC
CTGGGGTCGTGTATGGGGTCTCGCAGTGTTCACTTCAGCCCCACGAACGG
CGTCAGGGTCGCAGCTTGAACAATCCCGACATGCCGCTTGCGCGTCGTAT
GTCATCTACCGGCCCACCCTCGTTCCCTCAAGAAACGCGTATTATCTGCT
TCTTTGTCGGACAACAACAGCACAGTATGCGACACATGTTAAGAACCTCA
TAGTTAAGAGTTTCAGGTTGAGATTTCGAAATTTGAGCATTTACAGGTAA
GCATTTGTGCTGCACTCGAGGAGGAAATTAGAATTAGAATTATAAATCAG
GAAGTGCAAGGCGGTGGGCACATAAGAATCTGCCAGAATACACTCCAGCC
CGGAATAATAATAAACTGTCCGACCTCTCAAGGCCATATCAGGCGCTCCC
AACCAAGCTGTCTCCCCTCCAAAATGGACTTCATGTGACGGATACATATA
TTGTTTTTGGGCGAACCGCCGAAAATTGTCCCTTTCCCCCCTGAAAGCAT
GCAAATACCAAATATTGCAACACCATTTTTTCTCCGATAGCTTGGCAACC
GCCCAAGAAGAAAATGTCGCCTTGAAAATCTTTGCCAAATAATAATTTGA
ATATTAAGGAACTCGCGTTTTGCACCCCTTCGCACAATAAGAAAAAATTG
GGTTTAAGCATTTCTGCTGAAATCCGTCCGAAAATAAGCCGCGACCCTCA
GCCAAAATAGGAGGTTCTTAACATGTGTCGCGTACTGTAGTACCATACCG
CCCTAGACCGCCCTTAGCAGTGCGAGGGTCTCACACGAACAAACGCAACG
AAATCAAGCGGTGCAATGATGGGGCGACTCTAGGACACTTGGAGATCGCA
AAACCACGCGGCACTACTAGTCCATCCCCAAAATATACGCTAGCTTAAGC
TTTGAAGCACCGCAGCGACCCTTTGCCCGCCTTTCCCGGAATAGTCAGCA
GGAACATGGGCCCTTATTCCCCACAGGTTTTTATCGTATGGCTAGGACGT
GTATATTCCTCAGAGCTCTCTCTTCGAGTCCCATAAAAACGCGTTCTTCA
CGAAATACCACCTCATCCCAAACCCCAAAGTTATCCTCCGAAATCGCTTG
TGCCGGCCGTACTGCCTTTTCTCCATTCAATTACCGTCCTTCCGCACGCT
CTCCGCATATCGTGCCCATGAACTTGACGGGTGCCGAAACCTACCATTAC
ACGAAACTTCAGGTCGGGATGCTGAACGAGCGTCAGAAACAGGTGCTTAT
TGAGCGCTTGAATGACGATGTAGATCTGCCCTTGCTATCCGAAGAAAGGG
AAGAGCGCATTATTGAAAATCTGGTCGACAAGGTCAACCCGCACGTCGAA
CCCGCGCTAGGACTACTTTTGCCGGAGATCTACTTGACTTGCATCAAGCT
CGCGTTGAACGAGGAGCTGCACATCAAGGAGCGGAGGAAGCGCATCACCA
AAATGCTTCGCGACGAGCTCGCCGGGCCACTCGCGAGGGAGCTCAACGAA
CGCGTGGACCTCTCCCATTTTCCCGAACGGCTCGAGGGTGTGGTGCTTAA
GATCGTCGCCAAAAAGATCATTGGGGAGTTTGTTGAATGGACCGTGGGAG
CAGTAGACGGTTACCTGAACGAGGAGGAGGGTAGCGAATCCTCGTAAACC
ACTTTATAATCTTGCGATCTGCCCTTCCGTTTTCGTAGCCATTGTGTCAC
CCAGCATCAATCTGAAGTATCTGACAAAGGATTGTCACGGGTAACGTTGG
GCGAAGCCATCCGTTGCGTGACTCAGGGCGAGTGTTCAGTGTTCAGCATG
GAAGGGGTATGTCGCCTGAGTATTATGGTATTCAATGTGATCGAAAGAGA
GCTTTATTTAGTTGAGGACGAAATGACATTTAATTGTCGTGCTGAATCAG
CACAGGCATTCGGTCGGAGAGTTTCCTCTGGTAAGCGCCTCCGAATATCG
CTGGAGCTTAATCTAGATTATTTCAAAACACGAGTCGGCTGCCGTAGTCC
CTGAAAACGTTTTGTGGTTACCCCCGATACACATCATCAACGTCTCGCGG
ATATCCAGGATCCTTCATTGCGCGCAGCGTTAACGCGGAGTTCACAGCCC
ATGAGTGGGGAGTTGTTGGATCTAGCTGTTATTCACAGCTGCAAACGTTG
GTTCTCCGCATATATTGTGAGTCTTTGTAGTCTCTCTTCGATAGGAGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig933:2300..5748+

>mRNA_S-dermatodea_contig933.17377.1 ID=mRNA_S-dermatodea_contig933.17377.1|Name=mRNA_S-dermatodea_contig933.17377.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at S-dermatodea_contig933:2300..5748+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGTGATGACGGCTGCCTCGCCCGCGAAGAACCGCTCGAGCCTTCAAC
CCAGATGAGTGATGACGGCTGCCTCGCCCGCGAAGAACCGCTCGAGCCTT
CAACCCAGGTCGGGATGCTGAACGAGCGTCAGAAACAGGTGCTTATTGAG
CGCTTGAATGACGATGTAGATCTGCCCTTGCTATCCGAAGAAAGGGAAGA
GCGCATTATTGAAAATCTGGTCGACAAGGTCAACCCGCACGTCGAACCCG
CGCTAGGACTACTTTTGCCGGAGATCTACTTGACTTGCATCAAGCTCGCG
TTGAACGAGGAGCTGCACATCAAGGAGCGGAGGAAGCGCATCACCAAAAT
GCTTCGCGACGAGCTCGCCGGGCCACTCGCGAGGGAGCTCAACGAACGCG
TGGACCTCTCCCATTTTCCCGAACGGCTCGAGGGTGTGGTGCTTAAGATC
GTCGCCAAAAAGATCATTGGGGAGTTTGTTGAATGGACCGTGGGAGCAGT
AGACGGTTACCTGAACGAGGAGGAGGGTAGCGAATCCTCGTAAGTCGGGA
TGCTGAACGAGCGTCAGAAACAGGTGCTTATTGAGCGCTTGAATGACGAT
GTAGATCTGCCCTTGCTATCCGAAGAAAGGGAAGAGCGCATTATTGAAAA
TCTGGTCGACAAGGTCAACCCGCACGTCGAACCCGCGCTAGGACTACTTT
TGCCGGAGATCTACTTGACTTGCATCAAGCTCGCGTTGAACGAGGAGCTG
CACATCAAGGAGCGGAGGAAGCGCATCACCAAAATGCTTCGCGACGAGCT
CGCCGGGCCACTCGCGAGGGAGCTCAACGAACGCGTGGACCTCTCCCATT
TTCCCGAACGGCTCGAGGGTGTGGTGCTTAAGATCGTCGCCAAAAAGATC
ATTGGGGAGTTTGTTGAATGGACCGTGGGAGCAGTAGACGGTTACCTGAA
CGAGGAGGAGGGTAGCGAATCCTCGTAA
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