mRNA_S-dermatodea_contig93226.17373.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig93226.17373.1
Unique NamemRNA_S-dermatodea_contig93226.17373.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig93226.17373.1 vs. uniprot
Match: D8LF95_ECTSI (H(+)-exporting diphosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF95_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.660e-21
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 QAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFAEYFMIINDGKGVFNIKS 159
            +AAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFAEYF  IN+G+G FNI+S
Sbjct:  665 KAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFAEYFQAINNGQGAFNIES 717
[Close]
BLAST of mRNA_S-dermatodea_contig93226.17373.1 vs. uniprot
Match: A0A7S3HNR1_9STRA (H(+)-exporting diphosphatase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNR1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.460e-21
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 QAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFAEYFMIINDGKGVFNI 153
            +AAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFA++F  IN G+G+ N+
Sbjct:   57 KAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFADFFFAINGGRGLLNL 107
[Close]
BLAST of mRNA_S-dermatodea_contig93226.17373.1 vs. uniprot
Match: A0A835YSH3_9STRA (H(+)-exporting diphosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSH3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.080e-20
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 QAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFAEYFMIINDGKGVFNI 153
            +AAVVGDTVGDPLKDTSGPSLNILMKL AI+SLVFAEYFM INDG G+FN+
Sbjct:  683 KAAVVGDTVGDPLKDTSGPSLNILMKLSAIVSLVFAEYFMAINDGHGLFNV 733
[Close]
BLAST of mRNA_S-dermatodea_contig93226.17373.1 vs. uniprot
Match: Q6UB64_9STRA (H(+)-exporting diphosphatase (Fragment) n=1 Tax=Hyaloperonospora parasitica TaxID=123356 RepID=Q6UB64_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.780e-20
Identity = 39/53 (73.58%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 QAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFAEYFMIINDGKGVFNIKS 159
            +AAV+GDTVGDPLKDTSGP+LNILMKLMAIISLVF ++F  INDG+G+ N+ +
Sbjct:   61 KAAVIGDTVGDPLKDTSGPALNILMKLMAIISLVFGDFFKSINDGRGLLNVPT 113
[Close]
BLAST of mRNA_S-dermatodea_contig93226.17373.1 vs. uniprot
Match: A0A6V1Q500_HETAK (H(+)-exporting diphosphatase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q500_HETAK)

HSP 1 Score: 92.0 bits (227), Expect = 2.010e-20
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 QAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFAEYFMIINDGKGVFN 150
            +AAV+GDT+GDPLKDTSGPSLNILMKLMAIISLVFAEYF+ +NDG G+FN
Sbjct:  689 KAAVIGDTIGDPLKDTSGPSLNILMKLMAIISLVFAEYFLAVNDGHGLFN 738
[Close]
BLAST of mRNA_S-dermatodea_contig93226.17373.1 vs. uniprot
Match: A0A7S2MDG5_9STRA (H(+)-exporting diphosphatase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MDG5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.740e-20
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 QAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFAEYFMIINDGKGVFNI 153
            +AAVVGDTVGDPLKDTSGP+LNILMKLMAI+SLVFAEYF  INDG+G FNI
Sbjct:  689 KAAVVGDTVGDPLKDTSGPALNILMKLMAILSLVFAEYFNAINDGRGFFNI 739
[Close]
BLAST of mRNA_S-dermatodea_contig93226.17373.1 vs. uniprot
Match: A0A7S4FU20_9EUGL (H(+)-exporting diphosphatase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FU20_9EUGL)

HSP 1 Score: 91.7 bits (226), Expect = 2.740e-20
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 QAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFAEYFMIINDGKGVFNIKS 159
            +AAVVGDTVGDPLKDTSGP+LNILMKLMAIISLVFA++F  INDG+G+FN+ S
Sbjct:  724 KAAVVGDTVGDPLKDTSGPALNILMKLMAIISLVFADFFASINDGQGLFNVPS 776
[Close]
BLAST of mRNA_S-dermatodea_contig93226.17373.1 vs. uniprot
Match: F0W135_9STRA (H(+)-exporting diphosphatase n=2 Tax=Albugo TaxID=65356 RepID=F0W135_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 6.980e-20
Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 QAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFAEYFMIINDGKGVFNIKS 159
            +AAV+GDTVGDPLKDTSGPSLNILMKLMAIISLVF ++F  INDG+G+FNI  
Sbjct:  697 KAAVIGDTVGDPLKDTSGPSLNILMKLMAIISLVFGDFFKCINDGRGLFNIDQ 749
[Close]
BLAST of mRNA_S-dermatodea_contig93226.17373.1 vs. uniprot
Match: W7TN19_9STRA (H(+)-exporting diphosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN19_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 6.980e-20
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 QAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFAEYFMIINDGKGVFN 150
            +AAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFA YF+ INDG GVF+
Sbjct:  712 KAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFAPYFLAINDGNGVFH 761
[Close]
BLAST of mRNA_S-dermatodea_contig93226.17373.1 vs. uniprot
Match: A0A7S0GRA2_MICPS (H(+)-exporting diphosphatase n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GRA2_MICPS)

HSP 1 Score: 89.4 bits (220), Expect = 9.390e-20
Identity = 42/51 (82.35%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 QAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFAEYFMIINDGKGVFNI 153
            +AAVVGDTVGDPLKDTSGP+LNILMKLMAIISLVFA++FM IN+G+G FN+
Sbjct:  321 KAAVVGDTVGDPLKDTSGPALNILMKLMAIISLVFADFFMSINNGQGYFNV 371
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig93226.17373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF95_ECTSI1.660e-2186.79H(+)-exporting diphosphatase n=2 Tax=Ectocarpus Ta... [more]
A0A7S3HNR1_9STRA8.460e-2180.39H(+)-exporting diphosphatase n=1 Tax=Spumella elon... [more]
A0A835YSH3_9STRA1.080e-2086.27H(+)-exporting diphosphatase n=1 Tax=Tribonema min... [more]
Q6UB64_9STRA1.780e-2073.58H(+)-exporting diphosphatase (Fragment) n=1 Tax=Hy... [more]
A0A6V1Q500_HETAK2.010e-2084.00H(+)-exporting diphosphatase n=1 Tax=Heterosigma a... [more]
A0A7S2MDG5_9STRA2.740e-2086.27H(+)-exporting diphosphatase n=1 Tax=Dictyocha spe... [more]
A0A7S4FU20_9EUGL2.740e-2081.13H(+)-exporting diphosphatase n=1 Tax=Eutreptiella ... [more]
F0W135_9STRA6.980e-2079.25H(+)-exporting diphosphatase n=2 Tax=Albugo TaxID=... [more]
W7TN19_9STRA6.980e-2088.00H(+)-exporting diphosphatase n=2 Tax=Monodopsidace... [more]
A0A7S0GRA2_MICPS9.390e-2082.35H(+)-exporting diphosphatase n=2 Tax=Micromonas pu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig93226contigS-dermatodea_contig93226:245..406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue4e-17
Seed eggNOG ortholog2880.D8LF95
Preferred nameAVP1
KEGG koko:K01507
KEGG Pathwayko00190,map00190
GOsGO:0000325,GO:0001101,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0009414,GO:0009415,GO:0009507,GO:0009526,GO:0009536,GO:0009628,GO:0009651,GO:0009678,GO:0009705,GO:0009914,GO:0009926,GO:0009941,GO:0010008,GO:0010035,GO:0010248,GO:0010817,GO:0012505,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0022804,GO:0022857,GO:0031090,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032501,GO:0032502,GO:0034220,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044433,GO:0044434,GO:0044435,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0060918,GO:0065007,GO:0065008,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099402,GO:1901700
EggNOG free text desc.hydrogen-translocating pyrophosphatase activity
EggNOG OGs2QPJC@2759,COG3808@1
EC3.6.1.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925400.649579-CDS-S-dermatodea_contig93226:244..4061622925400.649579-CDS-S-dermatodea_contig93226:244..406Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93226 245..406 +
1694079908.1494155-CDS-S-dermatodea_contig93226:244..4061694079908.1494155-CDS-S-dermatodea_contig93226:244..406Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93226 245..406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig93226.17373.1prot_S-dermatodea_contig93226.17373.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig93226 245..406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig93226.17373.1

>prot_S-dermatodea_contig93226.17373.1 ID=prot_S-dermatodea_contig93226.17373.1|Name=mRNA_S-dermatodea_contig93226.17373.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=54bp
QAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFAEYFMIINDGKGVFN
IKS*
back to top

mRNA from alignment at S-dermatodea_contig93226:245..406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig93226.17373.1 ID=mRNA_S-dermatodea_contig93226.17373.1|Name=mRNA_S-dermatodea_contig93226.17373.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at S-dermatodea_contig93226:245..406+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCGGCCGTCGTGGGCGACACCGTGGGCGACCCCCTCAAGGACACTTC
GGGGCCCTCCCTCAACATCCTCATGAAGCTGATGGCGATCATCTCGCTCG
TGTTCGCCGAGTACTTCATGATTATCAACGACGGGAAGGGCGTCTTCAAC
ATCAAGAGTTAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig93226:245..406+

>mRNA_S-dermatodea_contig93226.17373.1 ID=mRNA_S-dermatodea_contig93226.17373.1|Name=mRNA_S-dermatodea_contig93226.17373.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at S-dermatodea_contig93226:245..406+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCGGCCGTCGTGGGCGACACCGTGGGCGACCCCCTCAAGGACACTTC
GGGGCCCTCCCTCAACATCCTCATGAAGCTGATGGCGATCATCTCGCTCG
TGTTCGCCGAGTACTTCATGATTATCAACGACGGGAAGGGCGTCTTCAAC
ATCAAGAGTTAGCAGGCGGCCGTCGTGGGCGACACCGTGGGCGACCCCCT
CAAGGACACTTCGGGGCCCTCCCTCAACATCCTCATGAAGCTGATGGCGA
TCATCTCGCTCGTGTTCGCCGAGTACTTCATGATTATCAACGACGGGAAG
GGCGTCTTCAACATCAAGAGTTAG
back to top