mRNA_S-dermatodea_contig93223.17372.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig93223.17372.1
Unique NamemRNA_S-dermatodea_contig93223.17372.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig93223.17372.1 vs. uniprot
Match: A0A6H5L587_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L587_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 9.350e-18
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:   10 RYYCGICHLFDDAPGKDIYHCPYCNMCRLGKGLGV 114
            RYYCGICHLFDDAP KDIYHCPYCN+CRLGKGLGV
Sbjct:  919 RYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGV 953
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BLAST of mRNA_S-dermatodea_contig93223.17372.1 vs. uniprot
Match: A0A836B1Q6_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836B1Q6_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 8.630e-16
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   10 RYYCGICHLFDDAPGKDIYHCPYCNMCRLGKGLGV 114
            RY CGICHL+DD PGKDIYHCP+CN+CR G+GLGV
Sbjct:   33 RYVCGICHLYDDEPGKDIYHCPFCNVCRRGRGLGV 67
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BLAST of mRNA_S-dermatodea_contig93223.17372.1 vs. uniprot
Match: A0A2K3DRZ9_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DRZ9_CHLRE)

HSP 1 Score: 77.8 bits (190), Expect = 1.370e-15
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   10 RYYCGICHLFDDAPGKDIYHCPYCNMCRLGKGLGV 114
            RYYC ICHLFDD PGKDIYHCP+CN+CR G+GLGV
Sbjct: 1778 RYYCNICHLFDDEPGKDIYHCPFCNVCRRGRGLGV 1812
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BLAST of mRNA_S-dermatodea_contig93223.17372.1 vs. uniprot
Match: A0A7J7PIT3_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PIT3_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 1.370e-15
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:   13 YYCGICHLFDDAPGKDIYHCPYCNMCRLGKGLGV 114
            YYCGICHLFDD PG+DIYHCP+CN+CR GKGLGV
Sbjct: 1049 YYCGICHLFDDEPGRDIYHCPFCNVCRRGKGLGV 1082
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BLAST of mRNA_S-dermatodea_contig93223.17372.1 vs. uniprot
Match: A0A7S4DJ29_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJ29_HETAK)

HSP 1 Score: 75.5 bits (184), Expect = 3.490e-15
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   10 RYYCGICHLFDDAPGKDIYHCPYCNMCRLGKGLG 111
            RYYC IC LFDDAPGK IYHCPYCN+CRLG+GLG
Sbjct:   68 RYYCAICKLFDDAPGKAIYHCPYCNLCRLGRGLG 101
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BLAST of mRNA_S-dermatodea_contig93223.17372.1 vs. uniprot
Match: A0A061RGX4_9CHLO (Zinc finger protein-like protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RGX4_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 6.530e-15
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   10 RYYCGICHLFDDAPGKDIYHCPYCNMCRLGKGLGV 114
            +YYCGICHLFDDAP +DIYHCP CN+CR GKGLG+
Sbjct: 1060 KYYCGICHLFDDAPDRDIYHCPSCNVCRRGKGLGI 1094
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BLAST of mRNA_S-dermatodea_contig93223.17372.1 vs. uniprot
Match: A0A061S0H4_9CHLO (Zinc finger protein-like protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S0H4_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 6.540e-15
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   10 RYYCGICHLFDDAPGKDIYHCPYCNMCRLGKGLGV 114
            +YYCGICHLFDDAP +DIYHCP CN+CR GKGLG+
Sbjct:  670 KYYCGICHLFDDAPDRDIYHCPSCNVCRRGKGLGI 704
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BLAST of mRNA_S-dermatodea_contig93223.17372.1 vs. uniprot
Match: A0A383VLX5_TETOB (Uncharacterized protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VLX5_TETOB)

HSP 1 Score: 75.5 bits (184), Expect = 8.920e-15
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   13 YYCGICHLFDDAPGKDIYHCPYCNMCRLGKGLGV 114
            YYC ICHLFDD PG+DIYHCP+CN+CR GKGLGV
Sbjct: 1428 YYCSICHLFDDEPGRDIYHCPFCNVCRRGKGLGV 1461
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BLAST of mRNA_S-dermatodea_contig93223.17372.1 vs. uniprot
Match: A0A835XVX6_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XVX6_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 8.920e-15
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 AACRYYCGICHLFDDAPGKDIYHCPYCNMCRLGKGLGV 114
            A  RY C ICHLFDD PGKDIYHCP+CN+CR G+GLGV
Sbjct: 1384 AMARYVCNICHLFDDEPGKDIYHCPFCNVCRRGRGLGV 1421
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BLAST of mRNA_S-dermatodea_contig93223.17372.1 vs. uniprot
Match: A0A8J4CHG0_9CHLO (Uncharacterized protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CHG0_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 8.920e-15
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 AACRYYCGICHLFDDAPGKDIYHCPYCNMCRLGKGLGV 114
            A  RY C ICHLFDD PGKDIYHCP+CN+CR G+GLGV
Sbjct: 1338 AMARYVCNICHLFDDEPGKDIYHCPFCNVCRRGRGLGV 1375
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig93223.17372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L587_9PHAE9.350e-1894.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836B1Q6_9CHLO8.630e-1680.00Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A2K3DRZ9_CHLRE1.370e-1582.86Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A7J7PIT3_9CHLO1.370e-1585.29Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A7S4DJ29_HETAK3.490e-1585.29Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A061RGX4_9CHLO6.530e-1580.00Zinc finger protein-like protein n=1 Tax=Tetraselm... [more]
A0A061S0H4_9CHLO6.540e-1580.00Zinc finger protein-like protein n=1 Tax=Tetraselm... [more]
A0A383VLX5_TETOB8.920e-1582.35Uncharacterized protein n=2 Tax=Tetradesmus obliqu... [more]
A0A835XVX6_9CHLO8.920e-1576.32Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A8J4CHG0_9CHLO8.920e-1576.32Uncharacterized protein n=2 Tax=Volvox reticulifer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig93223contigS-dermatodea_contig93223:172..306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue6.9e-15
Seed eggNOG ortholog2880.D7FUX1
KEGG koko:K16276
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG1940@1,KOG1940@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925400.6203442-CDS-S-dermatodea_contig93223:171..3061622925400.6203442-CDS-S-dermatodea_contig93223:171..306Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93223 172..306 -
1694079908.129199-CDS-S-dermatodea_contig93223:171..3061694079908.129199-CDS-S-dermatodea_contig93223:171..306Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93223 172..306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig93223.17372.1prot_S-dermatodea_contig93223.17372.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig93223 172..306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig93223.17372.1

>prot_S-dermatodea_contig93223.17372.1 ID=prot_S-dermatodea_contig93223.17372.1|Name=mRNA_S-dermatodea_contig93223.17372.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=45bp
AACRYYCGICHLFDDAPGKDIYHCPYCNMCRLGKGLGVVRGSPD*
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mRNA from alignment at S-dermatodea_contig93223:172..306-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig93223.17372.1 ID=mRNA_S-dermatodea_contig93223.17372.1|Name=mRNA_S-dermatodea_contig93223.17372.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at S-dermatodea_contig93223:172..306- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCGTGCAGGTACTACTGCGGCATCTGCCACCTCTTCGACGACGCCCC
TGGGAAGGACATCTACCACTGCCCCTACTGCAACATGTGCCGCTTGGGGA
AAGGCCTCGGGGTGGTGAGAGGGAGTCCCGATTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig93223:172..306-

>mRNA_S-dermatodea_contig93223.17372.1 ID=mRNA_S-dermatodea_contig93223.17372.1|Name=mRNA_S-dermatodea_contig93223.17372.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at S-dermatodea_contig93223:172..306- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCGTGCAGGTACTACTGCGGCATCTGCCACCTCTTCGACGACGCCCC
TGGGAAGGACATCTACCACTGCCCCTACTGCAACATGTGCCGCTTGGGGA
AAGGCCTCGGGGTGGTGAGAGGGAGTCCCGATTAAGCGGCGTGCAGGTAC
TACTGCGGCATCTGCCACCTCTTCGACGACGCCCCTGGGAAGGACATCTA
CCACTGCCCCTACTGCAACATGTGCCGCTTGGGGAAAGGCCTCGGGGTGG
TGAGAGGGAGTCCCGATTAA
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