mRNA_S-dermatodea_contig9314.17367.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9314.17367.1
Unique NamemRNA_S-dermatodea_contig9314.17367.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9314.17367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9314contigS-dermatodea_contig9314:7079..7435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size306
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925400.3131213-UTR-S-dermatodea_contig9314:7078..71291622925400.3131213-UTR-S-dermatodea_contig9314:7078..7129Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9314 7079..7129 +
1694079907.9660356-UTR-S-dermatodea_contig9314:7078..71291694079907.9660356-UTR-S-dermatodea_contig9314:7078..7129Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9314 7079..7129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925400.328299-CDS-S-dermatodea_contig9314:7129..74351622925400.328299-CDS-S-dermatodea_contig9314:7129..7435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9314 7130..7435 +
1694079907.975161-CDS-S-dermatodea_contig9314:7129..74351694079907.975161-CDS-S-dermatodea_contig9314:7129..7435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9314 7130..7435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9314.17367.1prot_S-dermatodea_contig9314.17367.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9314 7130..7435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9314.17367.1

>prot_S-dermatodea_contig9314.17367.1 ID=prot_S-dermatodea_contig9314.17367.1|Name=mRNA_S-dermatodea_contig9314.17367.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
MAGRSRPTTAAALPRRPVLADNNHFSDSASSHDGPSDDESHQTFGAPSRD
MNASSGKSDPPTRRRRSGGIPSLISRQGSRSHLGIESGITRTREITRWAH
S*
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mRNA from alignment at S-dermatodea_contig9314:7079..7435+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9314.17367.1 ID=mRNA_S-dermatodea_contig9314.17367.1|Name=mRNA_S-dermatodea_contig9314.17367.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=357bp|location=Sequence derived from alignment at S-dermatodea_contig9314:7079..7435+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTACTTTTTTCGAGTGCTTCACAGCGCTATATATACTCCTAAATACAAGC
GATGGCAGGGAGATCGCGTCCCACCACCGCTGCGGCGTTGCCTAGGCGGC
CAGTCTTGGCGGACAACAACCATTTCTCGGATTCGGCGAGCTCGCACGAT
GGACCTAGCGATGACGAGAGCCACCAGACGTTTGGAGCTCCGTCGAGAGA
CATGAATGCCTCCTCTGGGAAGAGCGACCCGCCTACTAGGAGAAGAAGGA
GTGGGGGCATTCCGAGCCTCATCAGCAGACAGGGCAGTCGTAGCCACCTC
GGGATTGAATCGGGGATAACGCGGACGCGTGAGATAACCAGGTGGGCACA
TTCTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9314:7079..7435+

>mRNA_S-dermatodea_contig9314.17367.1 ID=mRNA_S-dermatodea_contig9314.17367.1|Name=mRNA_S-dermatodea_contig9314.17367.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig9314:7079..7435+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGGGAGATCGCGTCCCACCACCGCTGCGGCGTTGCCTAGGCGGCC
AGTCTTGGCGGACAACAACCATTTCTCGGATTCGGCGAGCTCGCACGATG
GACCTAGCGATGACGAGAGCCACCAGACGTTTGGAGCTCCGTCGAGAGAC
ATGAATGCCTCCTCTGGGAAGAGCGACCCGCCTACTAGGAGAAGAAGGAG
TGGGGGCATTCCGAGCCTCATCAGCAGACAGGGCAGTCGTAGCCACCTCG
GGATTGAATCGGGGATAACGCGGACGCGTGAGATAACCAGGTGGGCACAT
TCTTGAATGGCAGGGAGATCGCGTCCCACCACCGCTGCGGCGTTGCCTAG
GCGGCCAGTCTTGGCGGACAACAACCATTTCTCGGATTCGGCGAGCTCGC
ACGATGGACCTAGCGATGACGAGAGCCACCAGACGTTTGGAGCTCCGTCG
AGAGACATGAATGCCTCCTCTGGGAAGAGCGACCCGCCTACTAGGAGAAG
AAGGAGTGGGGGCATTCCGAGCCTCATCAGCAGACAGGGCAGTCGTAGCC
ACCTCGGGATTGAATCGGGGATAACGCGGACGCGTGAGATAACCAGGTGG
GCACATTCTTGA
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