mRNA_S-dermatodea_contig93082.17361.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig93082.17361.1
Unique NamemRNA_S-dermatodea_contig93082.17361.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig93082.17361.1 vs. uniprot
Match: A0A6H5K4S4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S4_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 3.840e-49
Identity = 87/192 (45.31%), Postives = 117/192 (60.94%), Query Frame = 1 
Query:    1 IGVPKGLQQMLMEMDLFQLPGESKPPPLQCKKFLQRR-------------------------RRDEEGWGQWRAATDDG--------------RCCARKIVSELEASKQTLNRVEKIFKKAGHLCIFLPKYHPELNAIERFWGYSTYVIRLHCEYSLPHLLATLPGALRSIPTELIRKWTRVSWLYVQAYDE 459
            IG  KG QQ+LMEM L+ +PG++    L+CK   + R                         R D++G G   A+ ++G              RCC RK+ +EL+A K  LN++EK+FKKAGH+CIFL KYHPELNAIER+WGY  +++RL CEYSLPH+L  LPGAL  +P   +R W+RV+WLY++AYDE
Sbjct:   32 IGQAKGGQQLLMEMGLWDVPGQAPIRVLECKACKEERKAIKAAITAFNRGGEARQQALDDAAREDQDGGGDG-ASPEEGTEGGAAGNRVGMRRRCCIRKVFAELKAFKMELNKIEKMFKKAGHICIFLAKYHPELNAIERYWGYVKHLLRLSCEYSLPHMLEILPGALSGVPLGFVRGWSRVTWLYLEAYDE 222
[Close]
BLAST of mRNA_S-dermatodea_contig93082.17361.1 vs. uniprot
Match: A0A6H5JT56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT56_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 5.050e-48
Identity = 87/192 (45.31%), Postives = 118/192 (61.46%), Query Frame = 1 
Query:    1 IGVPKGLQQMLMEMDLFQLPGESKPPPLQCKKFLQRR-------------------------RRDEEGWGQWRAATDDG--------------RCCARKIVSELEASKQTLNRVEKIFKKAGHLCIFLPKYHPELNAIERFWGYSTYVIRLHCEYSLPHLLATLPGALRSIPTELIRKWTRVSWLYVQAYDE 459
            IG  KG QQ+LMEM L+ +PG++    L+CK   + R                         R D++G G   A+ ++G              RCC RK+ +EL+A K  LN++EK+FKKAGH+CIFL KYHPELNAIER+WGY+ +++RL CEYSLPH+L  LPGAL  +P   +R W+RV+WLY++AYDE
Sbjct:  239 IGQAKGGQQLLMEMGLWDVPGQAPIRVLECKACKEERKAIKAAITAFNRGGEARQQALDDAAREDQDGGGDG-ASPEEGTEGGAAGNRVGMRRRCCIRKVFAELKAFKMELNKIEKMFKKAGHICIFLAKYHPELNAIERYWGYAKHILRLSCEYSLPHMLEILPGALSGVPLGFVRGWSRVTWLYLEAYDE 429
[Close]
BLAST of mRNA_S-dermatodea_contig93082.17361.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 5.840e-46
Identity = 87/192 (45.31%), Postives = 117/192 (60.94%), Query Frame = 1 
Query:    1 IGVPKGLQQMLMEMDLFQLPGESKPPPLQCKKFLQRR-------------------------RRDEEGWGQWRAATDDG--------------RCCARKIVSELEASKQTLNRVEKIFKKAGHLCIFLPKYHPELNAIERFWGYSTYVIRLHCEYSLPHLLATLPGALRSIPTELIRKWTRVSWLYVQAYDE 459
            IG  KG QQ+LMEM L+ +PG++    L+CK   + R                         R D++G G   A+ ++G              RCC RK+ +EL+A K  LN++EK+FKKAGH+CIFL KYHPELNAIER+WGY  +++RL CEYSLPH+L  LPGAL  +P   +R W+RV+WLY++AYDE
Sbjct:  672 IGQAKGGQQLLMEMGLWDVPGQAPIRVLECKACKEERKAIKAAITAFNRGGEARQQALDDAAREDQDGGGDG-ASPEEGTEGGAAGNRVGMRRRCCIRKVFAELKAFKMELNKIEKMFKKAGHICIFLAKYHPELNAIERYWGYVKHLLRLSCEYSLPHMLEILPGALSGVPLGFVRGWSRVTWLYLEAYDE 862
[Close]
BLAST of mRNA_S-dermatodea_contig93082.17361.1 vs. uniprot
Match: A0A6H5KDG4_9PHAE (Uncharacterized protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDG4_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.430e-44
Identity = 87/192 (45.31%), Postives = 115/192 (59.90%), Query Frame = 1 
Query:    1 IGVPKGLQQMLMEMDLFQLPGESKPPPLQCKKFLQRR-------------------------RRDEEGWGQWRAATDDG--------------RCCARKIVSELEASKQTLNRVEKIFKKAGHLCIFLPKYHPELNAIERFWGYSTYVIRLHCEYSLPHLLATLPGALRSIPTELIRKWTRVSWLYVQAYDE 459
            IG  KG QQ+LMEM L+ +PG++    L+CK   + R                         R D++G G   A+ ++G               CC RK  +EL+A K  LN+VEK+FKKAGH+CIFL KYHPELNAIER+WGY  +++RL CEYSLPH+L  LPGAL  +P   +R W+RV+WLY++AYDE
Sbjct: 1051 IGQAKGGQQLLMEMGLWDVPGQAPIRVLECKACKEERKAIKAAITAFNRVGEARQQALDDAAREDQDGGGDG-ASPEEGTEGGAAGNRVGMRRHCCIRKAFAELKAFKVKLNKVEKMFKKAGHICIFLAKYHPELNAIERYWGYVKHLLRLSCEYSLPHMLEILPGALSGVPLGFVRGWSRVTWLYLEAYDE 1241
[Close]
BLAST of mRNA_S-dermatodea_contig93082.17361.1 vs. uniprot
Match: A0A6H5KKI5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI5_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.240e-44
Identity = 67/114 (58.77%), Postives = 84/114 (73.68%), Query Frame = 1 
Query:  118 DEEGWGQWRAATDDGRCCARKIVSELEASKQTLNRVEKIFKKAGHLCIFLPKYHPELNAIERFWGYSTYVIRLHCEYSLPHLLATLPGALRSIPTELIRKWTRVSWLYVQAYDE 459
            D  G G    A    RCC  +++SEL+A ++ LN VE +FK  GHLCIFLPKYHPELNAIER+WGY  +++RLHCEYSL H+L  LPGAL  +P   IR W+RV+WLY++AYDE
Sbjct:   60 DSSGSGAAGEAGKRRRCCVVRVLSELKAFREELNMVENLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDE 173
[Close]
BLAST of mRNA_S-dermatodea_contig93082.17361.1 vs. uniprot
Match: A0A6H5JJ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ42_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 3.600e-44
Identity = 89/191 (46.60%), Postives = 111/191 (58.12%), Query Frame = 1 
Query:    1 IGVPKGLQQMLMEMDLFQLPGESKPPPLQCKKFLQRR-------------------------RRDE----------EGWGQWRAATDDG---RCCARKIVSELEASKQTLNRVEKIFKKAGHLCIFLPKYHPELNAIERFWGYSTYVIRLHCEYSLPHLLATLPGALRSIPTELIRKWTRVSWLYVQAYDE 459
            IG  KG QQMLMEM L+ +PGE     L+CK     R                         RRDE          EG     A    G   RCC  ++ +EL+A K  LN++EK+FKKAGH+CIFL KYHPELNAIER+WGY  +++RLHCEYSL H+L  LPGAL  +P   +R W+RV+WLY++AYDE
Sbjct: 1081 IGQAKGGQQMLMEMGLWDVPGEDPVRVLECKACKGERAATRAAITSFNRGGEGRQQALDDAARRDETDGESAGSPGEGAAGGAAGNHVGTRSRCCIGRVFAELKAFKMELNKIEKMFKKAGHICIFLAKYHPELNAIERYWGYVKHLLRLHCEYSLKHMLKILPGALSGVPLRFMRGWSRVTWLYLEAYDE 1271
[Close]
BLAST of mRNA_S-dermatodea_contig93082.17361.1 vs. uniprot
Match: A0A6H5JR66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR66_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 8.040e-44
Identity = 65/99 (65.66%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:  163 RCCARKIVSELEASKQTLNRVEKIFKKAGHLCIFLPKYHPELNAIERFWGYSTYVIRLHCEYSLPHLLATLPGALRSIPTELIRKWTRVSWLYVQAYDE 459
            RCC  +++SEL+A ++ LN VEK+FK  GHLCIFLPKYHPELNAIER+WGY  Y++RLHCEYSL H+L  LPGAL  +P   IR W+RV+WLY++AYDE
Sbjct:  172 RCCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKYLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDE 270
[Close]
BLAST of mRNA_S-dermatodea_contig93082.17361.1 vs. uniprot
Match: A0A6H5KWI8_9PHAE (Uncharacterized protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI8_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 3.150e-43
Identity = 64/99 (64.65%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:  163 RCCARKIVSELEASKQTLNRVEKIFKKAGHLCIFLPKYHPELNAIERFWGYSTYVIRLHCEYSLPHLLATLPGALRSIPTELIRKWTRVSWLYVQAYDE 459
            RCC  +++SEL+A ++ LN VEK+FK  GHLCIFLPKYHPELNAIER+WGY  +++RLHCEYSL H+L  LPGAL  +P   IR W+RV+WLY++AYDE
Sbjct:  109 RCCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRVWSRVTWLYIEAYDE 207
[Close]
BLAST of mRNA_S-dermatodea_contig93082.17361.1 vs. uniprot
Match: A0A6H5LC28_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC28_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 3.630e-43
Identity = 64/99 (64.65%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:  163 RCCARKIVSELEASKQTLNRVEKIFKKAGHLCIFLPKYHPELNAIERFWGYSTYVIRLHCEYSLPHLLATLPGALRSIPTELIRKWTRVSWLYVQAYDE 459
            RCC  +++SEL+A ++ LN VEK+FK  GHLCIFLPKYHPELNAIER+WGY  +++RLHCEYSL H+L  LPGAL  +P   IR W+RV+WLY++AYDE
Sbjct:  109 RCCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDE 207
[Close]
BLAST of mRNA_S-dermatodea_contig93082.17361.1 vs. uniprot
Match: A0A6H5KXM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM8_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.500e-42
Identity = 64/99 (64.65%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:  163 RCCARKIVSELEASKQTLNRVEKIFKKAGHLCIFLPKYHPELNAIERFWGYSTYVIRLHCEYSLPHLLATLPGALRSIPTELIRKWTRVSWLYVQAYDE 459
            RCC  +++SEL+A ++ LN VEK+FK  GHLCIFLPKYHPELNAIER+WGY  +++RLHCEYSL H+L  LPGAL  +P   IR W+RV+WLY++AYDE
Sbjct:  193 RCCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDE 291
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig93082.17361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4S4_9PHAE3.840e-4945.31Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT56_9PHAE5.050e-4845.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K659_9PHAE5.840e-4645.31Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDG4_9PHAE1.430e-4445.31Uncharacterized protein n=6 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKI5_9PHAE2.240e-4458.77Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JJ42_9PHAE3.600e-4446.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR66_9PHAE8.040e-4465.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWI8_9PHAE3.150e-4364.65Uncharacterized protein n=18 Tax=Ectocarpus sp. CC... [more]
A0A6H5LC28_9PHAE3.630e-4364.65Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXM8_9PHAE1.500e-4264.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig93082contigS-dermatodea_contig93082:36..566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score90.9
Seed ortholog evalue5.3e-16
Seed eggNOG ortholog588596.U9UNJ9
EggNOG OGs29JY0@1,2RT6R@2759,39VBJ@33154,3P12S@4751
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size459
Cds size432
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig93082.17361.1prot_S-dermatodea_contig93082.17361.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig93082 63..566 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925399.903996-UTR-S-dermatodea_contig93082:35..621622925399.903996-UTR-S-dermatodea_contig93082:35..62Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig93082 36..62 +
1694079907.7228713-UTR-S-dermatodea_contig93082:35..621694079907.7228713-UTR-S-dermatodea_contig93082:35..62Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig93082 36..62 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925399.9250066-CDS-S-dermatodea_contig93082:62..1321622925399.9250066-CDS-S-dermatodea_contig93082:62..132Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93082 63..132 +
1694079907.737047-CDS-S-dermatodea_contig93082:62..1321694079907.737047-CDS-S-dermatodea_contig93082:62..132Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93082 63..132 +
1622925399.9424055-CDS-S-dermatodea_contig93082:204..5661622925399.9424055-CDS-S-dermatodea_contig93082:204..566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93082 205..566 +
1694079907.7488022-CDS-S-dermatodea_contig93082:204..5661694079907.7488022-CDS-S-dermatodea_contig93082:204..566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93082 205..566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig93082.17361.1

>prot_S-dermatodea_contig93082.17361.1 ID=prot_S-dermatodea_contig93082.17361.1|Name=mRNA_S-dermatodea_contig93082.17361.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=144bp
MLMEMDLFQLPGESKPPPLQCKKFLQRRRRDEEGWGQWRAATDDGRCCAR
KIVSELEASKQTLNRVEKIFKKAGHLCIFLPKYHPELNAIERFWGYSTYV
IRLHCEYSLPHLLATLPGALRSIPTELIRKWTRVSWLYVQAYDE
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mRNA from alignment at S-dermatodea_contig93082:36..566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig93082.17361.1 ID=mRNA_S-dermatodea_contig93082.17361.1|Name=mRNA_S-dermatodea_contig93082.17361.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=531bp|location=Sequence derived from alignment at S-dermatodea_contig93082:36..566+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTGGGGTTCCCAAGGGCCTGCAGCAGATGCTGATGGAAATGGACCTGTT
TCAGCTTCCCGGCGAGTCAAAGCCCCCTCCTCTCCAGTGCAAGAAGTGTG
GCGACGAGAACAAGGCGAAACGGGAAGAAATCGCCGCTTTTAACCGTGGT
GGACAAAGCCGGGCTGAAGTTCTGCAGAGGAGGCGCCGCGATGAAGAAGG
CTGGGGACAGTGGAGGGCGGCAACCGACGACGGCCGGTGCTGCGCCCGGA
AAATTGTGTCCGAGCTTGAGGCTTCTAAACAGACCCTCAACCGCGTCGAG
AAGATATTCAAGAAAGCTGGGCACTTGTGCATTTTCCTCCCCAAGTATCA
CCCAGAGCTGAACGCCATCGAACGGTTCTGGGGATATTCCACGTACGTCA
TCCGCCTACACTGCGAGTATTCGCTGCCGCATTTGCTTGCCACGCTACCT
GGCGCGCTGCGCAGTATTCCGACGGAACTCATTCGCAAGTGGACCAGAGT
GTCATGGCTGTACGTGCAGGCATATGACGAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig93082:36..566+

>mRNA_S-dermatodea_contig93082.17361.1 ID=mRNA_S-dermatodea_contig93082.17361.1|Name=mRNA_S-dermatodea_contig93082.17361.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at S-dermatodea_contig93082:36..566+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGATGGAAATGGACCTGTTTCAGCTTCCCGGCGAGTCAAAGCCCCC
TCCTCTCCAGTGCAAGAAGTATGCTGATGGAAATGGACCTGTTTCAGCTT
CCCGGCGAGTCAAAGCCCCCTCCTCTCCAGTGCAAGAAGTTTCTGCAGAG
GAGGCGCCGCGATGAAGAAGGCTGGGGACAGTGGAGGGCGGCAACCGACG
ACGGCCGGTGCTGCGCCCGGAAAATTGTGTCCGAGCTTGAGGCTTCTAAA
CAGACCCTCAACCGCGTCGAGAAGATATTCAAGAAAGCTGGGCACTTGTG
CATTTTCCTCCCCAAGTATCACCCAGAGCTGAACGCCATCGAACGGTTCT
GGGGATATTCCACGTACGTCATCCGCCTACACTGCGAGTATTCGCTGCCG
CATTTGCTTGCCACGCTACCTGGCGCGCTGCGCAGTATTCCGACGGAACT
CATTCGCAAGTGGACCAGAGTGTCATGGCTGTACGTGCAGGCATATGACG
AATTCTGCAGAGGAGGCGCCGCGATGAAGAAGGCTGGGGACAGTGGAGGG
CGGCAACCGACGACGGCCGGTGCTGCGCCCGGAAAATTGTGTCCGAGCTT
GAGGCTTCTAAACAGACCCTCAACCGCGTCGAGAAGATATTCAAGAAAGC
TGGGCACTTGTGCATTTTCCTCCCCAAGTATCACCCAGAGCTGAACGCCA
TCGAACGGTTCTGGGGATATTCCACGTACGTCATCCGCCTACACTGCGAG
TATTCGCTGCCGCATTTGCTTGCCACGCTACCTGGCGCGCTGCGCAGTAT
TCCGACGGAACTCATTCGCAAGTGGACCAGAGTGTCATGGCTGTACGTGC
AGGCATATGACGAA
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