mRNA_S-dermatodea_contig9303.17359.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9303.17359.1
Unique NamemRNA_S-dermatodea_contig9303.17359.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9303.17359.1 vs. uniprot
Match: D7FS46_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS46_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.180e-6
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = -2 
Query:  538 EEGMKALMRLGIFLETHEVQEDTVDVLASAGWL 636
            ++G +AL+RLGIFLE HEVQEDTVDVL+SAGWL
Sbjct:  157 DKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 189
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BLAST of mRNA_S-dermatodea_contig9303.17359.1 vs. uniprot
Match: A0A6H5JK77_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK77_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.050e-5
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = -2 
Query:  538 EEGMKALMRLGIFLETHEVQEDTVDVLASAGWL 636
            ++G +AL+RLGIFLE HEVQEDTVDVL+SAGWL
Sbjct: 1095 DKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 1127
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9303.17359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS46_ECTSI2.180e-678.79VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JK77_9PHAE1.050e-578.79VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9303contigS-dermatodea_contig9303:1470..2199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size731
Cds size417
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925399.8687365-UTR-S-dermatodea_contig9303:1469..17821622925399.8687365-UTR-S-dermatodea_contig9303:1469..1782Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9303 1470..1782 +
1694079907.695458-UTR-S-dermatodea_contig9303:1469..17821694079907.695458-UTR-S-dermatodea_contig9303:1469..1782Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9303 1470..1782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925399.8784769-CDS-S-dermatodea_contig9303:1782..21991622925399.8784769-CDS-S-dermatodea_contig9303:1782..2199Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9303 1783..2199 +
1694079907.7107167-CDS-S-dermatodea_contig9303:1782..21991694079907.7107167-CDS-S-dermatodea_contig9303:1782..2199Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9303 1783..2199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9303.17359.1prot_S-dermatodea_contig9303.17359.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9303 1783..2199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9303.17359.1

>prot_S-dermatodea_contig9303.17359.1 ID=prot_S-dermatodea_contig9303.17359.1|Name=mRNA_S-dermatodea_contig9303.17359.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=139bp
MKPSNISQRYIYSFNSDDVGIYMVITQQHSNYYNNYIYKYSRRMSTTHIA
DTGTATAAAAAATSQKLTTIGNDGQSHPADANTSTVSSCTSCVSKKIPKR
MRAFIPSSRSCSAHPRSRARASSTSPRQSIPPPPPDRLT
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mRNA from alignment at S-dermatodea_contig9303:1470..2199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9303.17359.1 ID=mRNA_S-dermatodea_contig9303.17359.1|Name=mRNA_S-dermatodea_contig9303.17359.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=730bp|location=Sequence derived from alignment at S-dermatodea_contig9303:1470..2199+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCCAGTAGTGGTCACATACAAAACACCTATTAATATTAATACTACGCCG
GGCCTGCGGCACGTTTTATGTACACCAGACCAGCAGACATTATCTCGCAG
AGAGCGCGCGCACGTTGAATCCGAAGGCAGCATCAGCGGTCAGCGCCCCC
AATACTGTACCTGGTACATAACAAGCAACAATATAGTATCAGGAAGTATA
TTAATAGCTCCACTTCCTCGCACTTTGCGTTACATATCATACGCATCCTC
CATCCGCATCCATCCGCAATATGCTCGGGTTCGCCAAGCTTTTACTCATA
ATTACCCGATAAAATGAAACCTTCCAACATCAGTCAGCGCTATATATACT
CTTTTAACTCTGATGACGTAGGTATTTATATGGTAATTACACAACAACAC
AGTAATTACTATAATAACTATATCTACAAGTACTCTCGCCGCATGTCTAC
GACACACATCGCGGACACCGGAACAGCCACCGCCGCTGCCGCCGCCGCCA
CGTCACAAAAACTAACCACAATAGGAAACGACGGTCAAAGCCATCCAGCG
GACGCCAACACGTCCACAGTGTCCTCCTGCACCTCGTGCGTTTCCAAGAA
AATCCCTAAGCGCATGAGAGCCTTCATCCCTTCCTCTCGATCCTGCTCTG
CCCATCCACGATCCCGCGCGCGGGCGTCCTCCACGTCACCCCGGCAATCC
ATACCGCCTCCACCGCCCGACCGACTTACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9303:1470..2199+

>mRNA_S-dermatodea_contig9303.17359.1 ID=mRNA_S-dermatodea_contig9303.17359.1|Name=mRNA_S-dermatodea_contig9303.17359.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at S-dermatodea_contig9303:1470..2199+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAACCTTCCAACATCAGTCAGCGCTATATATACTCTTTTAACTCTGA
TGACGTAGGTATTTATATGGTAATTACACAACAACACAGTAATTACTATA
ATAACTATATCTACAAGTACTCTCGCCGCATGTCTACGACACACATCGCG
GACACCGGAACAGCCACCGCCGCTGCCGCCGCCGCCACGTCACAAAAACT
AACCACAATAGGAAACGACGGTCAAAGCCATCCAGCGGACGCCAACACGT
CCACAGTGTCCTCCTGCACCTCGTGCGTTTCCAAGAAAATCCCTAAGCGC
ATGAGAGCCTTCATCCCTTCCTCTCGATCCTGCTCTGCCCATCCACGATC
CCGCGCGCGGGCGTCCTCCACGTCACCCCGGCAATCCATACCGCCTCCAC
CGCCCGACCGACTTACGATGAAACCTTCCAACATCAGTCAGCGCTATATA
TACTCTTTTAACTCTGATGACGTAGGTATTTATATGGTAATTACACAACA
ACACAGTAATTACTATAATAACTATATCTACAAGTACTCTCGCCGCATGT
CTACGACACACATCGCGGACACCGGAACAGCCACCGCCGCTGCCGCCGCC
GCCACGTCACAAAAACTAACCACAATAGGAAACGACGGTCAAAGCCATCC
AGCGGACGCCAACACGTCCACAGTGTCCTCCTGCACCTCGTGCGTTTCCA
AGAAAATCCCTAAGCGCATGAGAGCCTTCATCCCTTCCTCTCGATCCTGC
TCTGCCCATCCACGATCCCGCGCGCGGGCGTCCTCCACGTCACCCCGGCA
ATCCATACCGCCTCCACCGCCCGACCGACTTACG
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