mRNA_S-dermatodea_contig9290.17355.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9290.17355.1
Unique NamemRNA_S-dermatodea_contig9290.17355.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9290.17355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9290contigS-dermatodea_contig9290:4875..5235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size361
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925399.643684-CDS-S-dermatodea_contig9290:4874..51831622925399.643684-CDS-S-dermatodea_contig9290:4874..5183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9290 4875..5183 +
1694079907.5983577-CDS-S-dermatodea_contig9290:4874..51831694079907.5983577-CDS-S-dermatodea_contig9290:4874..5183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9290 4875..5183 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925399.6551774-UTR-S-dermatodea_contig9290:5183..52351622925399.6551774-UTR-S-dermatodea_contig9290:5183..5235Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9290 5184..5235 +
1694079907.607352-UTR-S-dermatodea_contig9290:5183..52351694079907.607352-UTR-S-dermatodea_contig9290:5183..5235Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9290 5184..5235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9290.17355.1prot_S-dermatodea_contig9290.17355.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9290 4875..5183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9290.17355.1

>prot_S-dermatodea_contig9290.17355.1 ID=prot_S-dermatodea_contig9290.17355.1|Name=mRNA_S-dermatodea_contig9290.17355.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=103bp
ADYALPHTGAKPRACSYSAAQRAPSGCTAGAYTRLHVCVLCPLKQSTKTP
GLGITLERYDSRTRFNMYCSRRISFGISMLVDASVCRRTFRSEVLTVSSR
RQ*
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mRNA from alignment at S-dermatodea_contig9290:4875..5235+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9290.17355.1 ID=mRNA_S-dermatodea_contig9290.17355.1|Name=mRNA_S-dermatodea_contig9290.17355.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=361bp|location=Sequence derived from alignment at S-dermatodea_contig9290:4875..5235+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGATTATGCGCTCCCTCACACCGGAGCCAAGCCAAGGGCGTGCTCATA
CAGCGCGGCGCAGAGGGCGCCGTCGGGGTGCACAGCTGGCGCGTACACTC
GGCTCCATGTATGTGTGCTTTGCCCTTTGAAGCAATCAACGAAGACGCCT
GGCCTCGGCATTACCTTGGAAAGGTACGATAGCAGAACAAGGTTCAACAT
GTACTGTAGCCGAAGGATTTCCTTTGGGATTAGCATGTTAGTAGACGCAA
GCGTGTGTAGGCGAACATTTCGTTCAGAAGTATTAACAGTTTCATCTCGA
CGACAGTAGTCCATCTTCACGACAGTCCACATGAGAACATAATGGGGTAT
AAGTTCGCTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9290:4875..5235+

>mRNA_S-dermatodea_contig9290.17355.1 ID=mRNA_S-dermatodea_contig9290.17355.1|Name=mRNA_S-dermatodea_contig9290.17355.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at S-dermatodea_contig9290:4875..5235+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGATTATGCGCTCCCTCACACCGGAGCCAAGCCAAGGGCGTGCTCATA
CAGCGCGGCGCAGAGGGCGCCGTCGGGGTGCACAGCTGGCGCGTACACTC
GGCTCCATGTATGTGTGCTTTGCCCTTTGAAGCAATCAACGAAGACGCCT
GGCCTCGGCATTACCTTGGAAAGGTACGATAGCAGAACAAGGTTCAACAT
GTACTGTAGCCGAAGGATTTCCTTTGGGATTAGCATGTTAGTAGACGCAA
GCGTGTGTAGGCGAACATTTCGTTCAGAAGTATTAACAGTTTCATCTCGA
CGACAGTAGGCCGATTATGCGCTCCCTCACACCGGAGCCAAGCCAAGGGC
GTGCTCATACAGCGCGGCGCAGAGGGCGCCGTCGGGGTGCACAGCTGGCG
CGTACACTCGGCTCCATGTATGTGTGCTTTGCCCTTTGAAGCAATCAACG
AAGACGCCTGGCCTCGGCATTACCTTGGAAAGGTACGATAGCAGAACAAG
GTTCAACATGTACTGTAGCCGAAGGATTTCCTTTGGGATTAGCATGTTAG
TAGACGCAAGCGTGTGTAGGCGAACATTTCGTTCAGAAGTATTAACAGTT
TCATCTCGACGACAGTAG
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