mRNA_S-dermatodea_contig9282.17348.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9282.17348.1
Unique NamemRNA_S-dermatodea_contig9282.17348.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9282.17348.1 vs. uniprot
Match: D8LLQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ7_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.910e-19
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 3 
Query:    3 WELIDPMMDAFDRETAELLGWKHPFWSFSVMSALLLVAYHDLVRYAIPLALLSNVAYIFATK-RASMDNHRSALRRGFSR 239
            WEL+DP+ D  ++ T +LL WK+P  S SVM+ LLLVAYHDLVRYAIPLALL+NVAYI+A + +     H SA+  G+SR
Sbjct:   31 WELVDPVFDGLEKTTEDLLQWKNPVQSLSVMTGLLLVAYHDLVRYAIPLALLANVAYIYAQEEKKGTAVHASAV--GWSR 108
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BLAST of mRNA_S-dermatodea_contig9282.17348.1 vs. uniprot
Match: A0A6H5L705_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L705_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.960e-18
Identity = 68/147 (46.26%), Postives = 81/147 (55.10%), Query Frame = 3 
Query:    3 WELIDPMMDAFDRETAELLGWKHPFWSFSVMSALLLVAYHDLVRYAIPLALLSNVAYIFATKRASMDNHRSALRRG--FSRSPTGRAT--GDGGQ---HVRRSSSSGLTLQR----HRSRSTSPDP----RRPAASSSTATQGGAMA 398
            WEL+DP+ D  ++ T +LL WK+P  S SVM+ LLLVAYHDLVRYAIPLALL+NVAYI+     + D       +   F  +P  R    GDG Q   H RR SS G          RSR  SP P    +RPA S S A   G  A
Sbjct:  156 WELVDPVFDGLEKATKDLLQWKNPMQSLSVMTGLLLVAYHDLVRYAIPLALLANVAYIYGVGCITTDGXXXXXXQADLFGNAPRKRPAVEGDGQQLQQHTRRRSSGGRLGAEGDGSRRSRPPSPVPGSRLQRPAPSPSAAVTAGGTA 302
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9282.17348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLQ7_ECTSI1.910e-1958.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L705_9PHAE2.960e-1846.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9282contigS-dermatodea_contig9282:4861..7630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_004880.1
Hectar predicted targeting categoryother localisation
Exons4
Model size495
Cds size474
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9282.17348.1prot_S-dermatodea_contig9282.17348.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9282 4861..7610 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925398.8941715-CDS-S-dermatodea_contig9282:4860..50621622925398.8941715-CDS-S-dermatodea_contig9282:4860..5062Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9282 4861..5062 -
1694079907.0653117-CDS-S-dermatodea_contig9282:4860..50621694079907.0653117-CDS-S-dermatodea_contig9282:4860..5062Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9282 4861..5062 -
1622925398.9095469-CDS-S-dermatodea_contig9282:5943..60551622925398.9095469-CDS-S-dermatodea_contig9282:5943..6055Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9282 5944..6055 -
1694079907.0750425-CDS-S-dermatodea_contig9282:5943..60551694079907.0750425-CDS-S-dermatodea_contig9282:5943..6055Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9282 5944..6055 -
1622925398.921536-CDS-S-dermatodea_contig9282:6927..70571622925398.921536-CDS-S-dermatodea_contig9282:6927..7057Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9282 6928..7057 -
1694079907.084521-CDS-S-dermatodea_contig9282:6927..70571694079907.084521-CDS-S-dermatodea_contig9282:6927..7057Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9282 6928..7057 -
1622925398.9337208-CDS-S-dermatodea_contig9282:7580..76101622925398.9337208-CDS-S-dermatodea_contig9282:7580..7610Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9282 7581..7610 -
1694079907.0950687-CDS-S-dermatodea_contig9282:7580..76101694079907.0950687-CDS-S-dermatodea_contig9282:7580..7610Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9282 7581..7610 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925398.9457383-UTR-S-dermatodea_contig9282:7610..76301622925398.9457383-UTR-S-dermatodea_contig9282:7610..7630Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9282 7611..7630 -
1694079907.104357-UTR-S-dermatodea_contig9282:7610..76301694079907.104357-UTR-S-dermatodea_contig9282:7610..7630Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9282 7611..7630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9282.17348.1

>prot_S-dermatodea_contig9282.17348.1 ID=prot_S-dermatodea_contig9282.17348.1|Name=mRNA_S-dermatodea_contig9282.17348.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=158bp
MMDAFDRETAELLGWKHPFWSFSVMSALLLVAYHDLVRYAIPLALLSNVA
YIFATKRASMDNHRSALRRGFSRSPTGRATGDGGQHVRRSSSSGLTLQRH
RSRSTSPDPRRPAASSSTATQGGAMASKAPVTAPAERSFLARRSTAKQPK
GSSTMGKR
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mRNA from alignment at S-dermatodea_contig9282:4861..7630-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9282.17348.1 ID=mRNA_S-dermatodea_contig9282.17348.1|Name=mRNA_S-dermatodea_contig9282.17348.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2770bp|location=Sequence derived from alignment at S-dermatodea_contig9282:4861..7630- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTGGGAGCTGATAGACCCGATGATGGATGCTTTCGACAGAGAGACGGCG
GTGAGTTGGAAGTGTCTTCAAGTAGGCCCGCGAGGGTGAGGGAGCTTGTG
GTAGGTGTGTGTTTCGACAATGGTGTCTCTTATCATAGGGAGACTGTTTT
TGCTTGCCCTTTTGCCGGTCCCTCGGGTCGCGAGTGTCTGAAACGAGCAG
AGCTCCCAAGACCTCGGAGGGGAGGTTGCGCTTGGAGTTACGCCTCAAAC
ACACGTACCACATGCCTTCGCAGCTACATGTGTGTATCATACCCTTGCCT
CGTGCTGATTTATTTTCATCCTACCCCCCAAGCGTAGTTCTCCGGTGCAG
CTCTCTGAAACCTGCGATGTACCCTGGTAGTTGTTTTACGTTTGTCGTCA
GGAACTTGCACCGCCACGCGGATTGAAATGTTTACGCGTAAATGTTATGT
TTCTCGTTACGTACACAGTTGGGTTACTAAATAGTGGGGCTTGTCGCGCG
GTAGAGGTTCTCCCCGTTTCCCTTTGTACGGTCAATCAATCTTACTTACC
GCAACCCGCGTGTGTGACACCAGGAACTCTTGGGATGGAAGCACCCGTTT
TGGAGTTTTTCGGTGATGTCGGCATTGCTGTTGGTGGCCTATCACGACCT
CGTCCGCTACGCCATCCCGCTCGCGCTGCTCAGCAACGTGGCGTACATTT
TCGGTAAGAGAAGCCTGCACTCTTTCCCGGGACACGCTATGTTTGGAGTG
TTCGTGAGATTGTAAGGATGCTGGAGGGGGAGAACCATCCCATAGGTGTA
TTGGTTTTTCGAGGAACGTGTGTTTTCTCAAGGGGCGTGGTACTGTCAAG
GTTTTGATACGGTAACGTCGTGTGCCACTGCGACCCCTCCCCACCCCCCA
TTCAGTCCTGTAGTCGATGTGCGTTCCCCCGCTTGAAGGCGAGAATGCAG
CACATAGGTGTTAAAGCGCTCTTCGCCGGAGAATAATGCCGGGCCTTTGC
CCGCATGGCCCTAGCTGTCGGCTTAAACTTGACGTCCAGAGGCTCGACTT
TTGCTGGAGGGTCACCATGCAAAGCACGACGAAAAGGGTTCCACCTACGG
TCCGAAAGCAGGCTCAACTTGCTCACCCCTTGCTCGGATAAGCTGTTGCC
CGCTGCTTCTTGTGTTCTTGTACCGCCTCGTTCAACGCTGCCGCTCGCTC
GCGTTTCATTCACTATGATTCGCATTGCAAACCCCCCGTACCTAGAACTC
TCGAGTGTGTCTCGATGTATTCTCGGTTTTATCTCTGCCGCACCGCATTT
ATACCTCTGCGTGCCCAAGAAGAGTGCGTCTATAAATGATCCAAAATGTG
TGTGTTCCATGTTCCTGTTCGACCGAGTGACTCCCGCTCGTTTGCCGCCG
TGTTGGTGACTAGCGGCTTTTGTTTGTTTTTTGTCTGACCAGGAATGTCG
TTGTAGTCCAATCGGGTGTTCGAGCGAAAGAAGGCAACACCATGCCAACA
TCATTCTATTTATGTTTCTTCTTCCGCCCCTTACGCCTCTCTCCTTTTGG
GGCACCAAAACGCTGGCGGTACCAGCGACGAAGCGCGCATCTATGGACAA
CCACAGGTCCGCCCTGCGTCGAGGATTTTCTCGATCTCCCACAGGAAGGG
CTACTGGAGACGGGGGGCAGCACGTCAGGCGATCCAGGTGCACATGACTG
CTGTAGGACGCGGCGAAGCCAGCCTCCCGTTCGCTTCACGTTGTTGTCTG
TGCTATCTTTACCATTTTCCGTGTTGACCGTACCGTGCGAAAAATAAACG
CTCGGGAGGGAGGTCAGTTCCAAGCATGGTGCGGTTTTCCCCACTCTTGG
TGGCGCCGACATGACGTGCAGATTCCCATATGCACGAAGGAGAAATCGCG
TCGTAGTAGGCATAGTCTTCCAGGGCCTCTCCTAGGTCGTGGTTAAAGGT
AGTGTGGATGTTTGAGCCGCCAGGACGGCGTGCTCGCGCCATCTGGGGGG
GGGGGGGGGGAGAAAGAAAAGAATGAACCCAAAAGCGATTGAGAATGGAA
CTGGAAAAGAAAAATTGCGANNNNNNNNNNTCGGTGGGTCATATCCCTCC
CCGCTCCCCCGCTTGGGTAGGGGTAGAGGTGGGGGTGTTGGTTCGCCCGC
CGGGGGGGCGGGCCCCCCGCCGGGGGGGGGGGGGGGGGGGCAGAAGTACA
CGAATGAACCGATAATCGATTGAGAATGGACCTGTAGACGAAAAATTGGC
GCTGCTGCCCTTCGCCAGCCATCAGACCCACCGTTCCGACAACGAGACGC
TCCTCGAGGCGCACCAAGTGAGCCTCGGCAAGTTCTAAGAGCAAGCGGGC
CACGGACTTGGGGAACCCTTTACGAACTCCTCATGTTTGGTTGGCACCAC
AGCCCTGACTCTGACCCTAAACAGTGACGTGCACATCGCCTTAATACGGA
TCATGACCAACGCCCGCCCCGGCAACAGGCAAAAATCACCAAACCCACCC
CTCCCCCCTCCCCGACTTCCGCCCCGAACAAACCCAACCCCATTCCACAT
TCGTGCTCCTTGCGAAAGCTCGAGCGGGTTAACGCTGCAGAGGCACCGAT
CCCGATCCACATCTCCTGACCCTCGGAGACCTGCCGCTTCCTCTTCTACC
GCGACGCAAGGGGGCGCAATGGCTAGCAAAGCTCCTGTGACAGCGCCGGC
GGAAAGGTCTTTCTTAGCTCGTCGCAGTACGGCGAAGCAGCCTAAAGGGT
CTTCAACAATGGGCAAGCGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9282:4861..7630-

>mRNA_S-dermatodea_contig9282.17348.1 ID=mRNA_S-dermatodea_contig9282.17348.1|Name=mRNA_S-dermatodea_contig9282.17348.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at S-dermatodea_contig9282:4861..7630- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGATGCTTTCGACAGAGAGACGGCGATGATGGATGCTTTCGACAG
AGAGACGGCGGAACTCTTGGGATGGAAGCACCCGTTTTGGAGTTTTTCGG
TGATGTCGGCATTGCTGTTGGTGGCCTATCACGACCTCGTCCGCTACGCC
ATCCCGCTCGCGCTGCTCAGCAACGTGGCGTACATTTTCGGAACTCTTGG
GATGGAAGCACCCGTTTTGGAGTTTTTCGGTGATGTCGGCATTGCTGTTG
GTGGCCTATCACGACCTCGTCCGCTACGCCATCCCGCTCGCGCTGCTCAG
CAACGTGGCGTACATTTTCGCGACGAAGCGCGCATCTATGGACAACCACA
GGTCCGCCCTGCGTCGAGGATTTTCTCGATCTCCCACAGGAAGGGCTACT
GGAGACGGGGGGCAGCACGTCAGGCGATCCAGCGACGAAGCGCGCATCTA
TGGACAACCACAGGTCCGCCCTGCGTCGAGGATTTTCTCGATCTCCCACA
GGAAGGGCTACTGGAGACGGGGGGCAGCACGTCAGGCGATCCAGCTCGAG
CGGGTTAACGCTGCAGAGGCACCGATCCCGATCCACATCTCCTGACCCTC
GGAGACCTGCCGCTTCCTCTTCTACCGCGACGCAAGGGGGCGCAATGGCT
AGCAAAGCTCCTGTGACAGCGCCGGCGGAAAGGTCTTTCTTAGCTCGTCG
CAGTACGGCGAAGCAGCCTAAAGGGTCTTCAACAATGGGCAAGCGCCTCG
AGCGGGTTAACGCTGCAGAGGCACCGATCCCGATCCACATCTCCTGACCC
TCGGAGACCTGCCGCTTCCTCTTCTACCGCGACGCAAGGGGGCGCAATGG
CTAGCAAAGCTCCTGTGACAGCGCCGGCGGAAAGGTCTTTCTTAGCTCGT
CGCAGTACGGCGAAGCAGCCTAAAGGGTCTTCAACAATGGGCAAGCGC
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