mRNA_S-dermatodea_contig9275.17335.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9275.17335.1
Unique NamemRNA_S-dermatodea_contig9275.17335.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9275.17335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9275contigS-dermatodea_contig9275:6147..6519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9275.17335.1prot_S-dermatodea_contig9275.17335.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9275 6179..6494 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925398.0462687-UTR-S-dermatodea_contig9275:6146..61781622925398.0462687-UTR-S-dermatodea_contig9275:6146..6178Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9275 6147..6178 -
1694079906.476868-UTR-S-dermatodea_contig9275:6146..61781694079906.476868-UTR-S-dermatodea_contig9275:6146..6178Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9275 6147..6178 -
1622925398.0866373-UTR-S-dermatodea_contig9275:6494..65191622925398.0866373-UTR-S-dermatodea_contig9275:6494..6519Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9275 6495..6519 -
1694079906.5119789-UTR-S-dermatodea_contig9275:6494..65191694079906.5119789-UTR-S-dermatodea_contig9275:6494..6519Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9275 6495..6519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925398.0608442-CDS-S-dermatodea_contig9275:6178..64051622925398.0608442-CDS-S-dermatodea_contig9275:6178..6405Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9275 6179..6405 -
1694079906.488341-CDS-S-dermatodea_contig9275:6178..64051694079906.488341-CDS-S-dermatodea_contig9275:6178..6405Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9275 6179..6405 -
1622925398.0740752-CDS-S-dermatodea_contig9275:6418..64941622925398.0740752-CDS-S-dermatodea_contig9275:6418..6494Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9275 6419..6494 -
1694079906.5014608-CDS-S-dermatodea_contig9275:6418..64941694079906.5014608-CDS-S-dermatodea_contig9275:6418..6494Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9275 6419..6494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9275.17335.1

>prot_S-dermatodea_contig9275.17335.1 ID=prot_S-dermatodea_contig9275.17335.1|Name=mRNA_S-dermatodea_contig9275.17335.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
MIININTNSSTDIGVRIIQVEPPRKTKPVMVSVETPTPTLFALMFGHWVL
KHRAPWLFGVGEWYRRQLSVVRATFVPQLHSPIASLCKTSDSIQLPANRI
*
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mRNA from alignment at S-dermatodea_contig9275:6147..6519-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9275.17335.1 ID=mRNA_S-dermatodea_contig9275.17335.1|Name=mRNA_S-dermatodea_contig9275.17335.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=373bp|location=Sequence derived from alignment at S-dermatodea_contig9275:6147..6519- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCCGTGCGACGTTTCAAAAATAAAATGATCATCAACATAAATACCAACA
GCAGCACTGATATTGGTGTCAGAATAATACAAGTAGAGCCTCCCCGTAAA
AGCCAACGTAAAAGCCAAACCGGTCATGGTCTCGGTGGAAACACCCACTC
CTACTTTGTTCGCCTTAATGTTCGGCCACTGGGTACTGAAACACCGTGCA
CCGTGGCTGTTTGGCGTGGGTGAATGGTATCGAAGACAACTCAGCGTTGT
ACGTGCCACTTTTGTACCCCAGCTCCACTCACCAATTGCGAGCCTGTGCA
AAACAAGTGACTCGATCCAACTGCCGGCAAACCGTATTTGATTCCTGTCT
GTACTGCACAGCGAAGAAGGGAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9275:6147..6519-

>mRNA_S-dermatodea_contig9275.17335.1 ID=mRNA_S-dermatodea_contig9275.17335.1|Name=mRNA_S-dermatodea_contig9275.17335.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig9275:6147..6519- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCATCAACATAAATACCAACAGCAGCACTGATATTGGTGTCAGAAT
AATACAAGTAGAGCCTCCCCGTAAAAATGATCATCAACATAAATACCAAC
AGCAGCACTGATATTGGTGTCAGAATAATACAAGTAGAGCCTCCCCGTAA
AACCAAACCGGTCATGGTCTCGGTGGAAACACCCACTCCTACTTTGTTCG
CCTTAATGTTCGGCCACTGGGTACTGAAACACCGTGCACCGTGGCTGTTT
GGCGTGGGTGAATGGTATCGAAGACAACTCAGCGTTGTACGTGCCACTTT
TGTACCCCAGCTCCACTCACCAATTGCGAGCCTGTGCAAAACAAGTGACT
CGATCCAACTGCCGGCAAACCGTATTTGACCAAACCGGTCATGGTCTCGG
TGGAAACACCCACTCCTACTTTGTTCGCCTTAATGTTCGGCCACTGGGTA
CTGAAACACCGTGCACCGTGGCTGTTTGGCGTGGGTGAATGGTATCGAAG
ACAACTCAGCGTTGTACGTGCCACTTTTGTACCCCAGCTCCACTCACCAA
TTGCGAGCCTGTGCAAAACAAGTGACTCGATCCAACTGCCGGCAAACCGT
ATTTGA
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