mRNA_S-dermatodea_contig9272.17331.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9272.17331.1
Unique NamemRNA_S-dermatodea_contig9272.17331.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9272.17331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9272contigS-dermatodea_contig9272:7365..7766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size389
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9272.17331.1prot_S-dermatodea_contig9272.17331.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9272 7475..7766 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925397.8536425-UTR-S-dermatodea_contig9272:7364..74741622925397.8536425-UTR-S-dermatodea_contig9272:7364..7474Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9272 7365..7474 +
1694079906.360052-UTR-S-dermatodea_contig9272:7364..74741694079906.360052-UTR-S-dermatodea_contig9272:7364..7474Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9272 7365..7474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925397.8643382-CDS-S-dermatodea_contig9272:7474..75621622925397.8643382-CDS-S-dermatodea_contig9272:7474..7562Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9272 7475..7562 +
1694079906.3697767-CDS-S-dermatodea_contig9272:7474..75621694079906.3697767-CDS-S-dermatodea_contig9272:7474..7562Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9272 7475..7562 +
1622925397.8754547-CDS-S-dermatodea_contig9272:7575..77661622925397.8754547-CDS-S-dermatodea_contig9272:7575..7766Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9272 7576..7766 +
1694079906.3797581-CDS-S-dermatodea_contig9272:7575..77661694079906.3797581-CDS-S-dermatodea_contig9272:7575..7766Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9272 7576..7766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9272.17331.1

>prot_S-dermatodea_contig9272.17331.1 ID=prot_S-dermatodea_contig9272.17331.1|Name=mRNA_S-dermatodea_contig9272.17331.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp
MLAPAYDTKIQQHPSSDVKQSRSHHDTTTLRTTEENQRASSRRLAKPGPH
PLQHHNKIMHRSPTQSALGERQAYTNASPRSRATSPPLYKTHD
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mRNA from alignment at S-dermatodea_contig9272:7365..7766+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9272.17331.1 ID=mRNA_S-dermatodea_contig9272.17331.1|Name=mRNA_S-dermatodea_contig9272.17331.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=402bp|location=Sequence derived from alignment at S-dermatodea_contig9272:7365..7766+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAAGCACGAGCTACAGGATTTCTGTCTGACGCGCTGCCTGTCATCAATCT
ACCATATCATGCAATAGGTAGGTAATGCCAAGCTACAGAAACTTACTGTA
AACTGAAGTGATGCTCGCACCGGCATACGACACAAAAATACAGCAGCATC
CATCATCAGATGTCAAACAAAGCAGATCCCACCACGACACGACAACGCTA
TTATTATAATATAAGAACTACTGAAGAGAACCAAAGAGCATCCTCCCGAC
GACTAGCTAAGCCCGGGCCGCACCCCTTGCAGCATCACAACAAGATTATG
CATCGCTCACCCACGCAGAGCGCTCTCGGCGAAAGGCAAGCGTATACAAA
CGCAAGCCCGAGGTCGCGAGCAACAAGCCCGCCTCTCTACAAAACCCATG
AT
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Coding sequence (CDS) from alignment at S-dermatodea_contig9272:7365..7766+

>mRNA_S-dermatodea_contig9272.17331.1 ID=mRNA_S-dermatodea_contig9272.17331.1|Name=mRNA_S-dermatodea_contig9272.17331.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig9272:7365..7766+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCGCACCGGCATACGACACAAAAATACAGCAGCATCCATCATCAGA
TGTCAAACAAAGCAGATCCCACCACGACACGACAACGCATGCTCGCACCG
GCATACGACACAAAAATACAGCAGCATCCATCATCAGATGTCAAACAAAG
CAGATCCCACCACGACACGACAACGCTAAGAACTACTGAAGAGAACCAAA
GAGCATCCTCCCGACGACTAGCTAAGCCCGGGCCGCACCCCTTGCAGCAT
CACAACAAGATTATGCATCGCTCACCCACGCAGAGCGCTCTCGGCGAAAG
GCAAGCGTATACAAACGCAAGCCCGAGGTCGCGAGCAACAAGCCCGCCTC
TCTACAAAACCCATGATTAAGAACTACTGAAGAGAACCAAAGAGCATCCT
CCCGACGACTAGCTAAGCCCGGGCCGCACCCCTTGCAGCATCACAACAAG
ATTATGCATCGCTCACCCACGCAGAGCGCTCTCGGCGAAAGGCAAGCGTA
TACAAACGCAAGCCCGAGGTCGCGAGCAACAAGCCCGCCTCTCTACAAAA
CCCATGAT
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