mRNA_S-dermatodea_contig9271.17330.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9271.17330.1
Unique NamemRNA_S-dermatodea_contig9271.17330.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9271.17330.1 vs. uniprot
Match: D7FQP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP3_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.460e-15
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 WYKRYRAKLWQGLCHQEHEMLDCPAAVLVVVSSTE 105
            WYKRYRAKLW GLCHQEHEMLDCPAAVLVVVSSTE
Sbjct:  123 WYKRYRAKLWGGLCHQEHEMLDCPAAVLVVVSSTE 157
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BLAST of mRNA_S-dermatodea_contig9271.17330.1 vs. uniprot
Match: A0A6H5JPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY7_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.610e-15
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 WYKRYRAKLWQGLCHQEHEMLDCPAAVLVVVSSTE 105
            WYKRYR KLW+GLCHQEHEMLDCPAAVLVVVSSTE
Sbjct:  123 WYKRYRTKLWEGLCHQEHEMLDCPAAVLVVVSSTE 157
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BLAST of mRNA_S-dermatodea_contig9271.17330.1 vs. uniprot
Match: A0A835YYI3_9STRA (ER-golgi trafficking TRAPP I complex 85 kDa subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYI3_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 6.990e-6
Identity = 20/35 (57.14%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 WYKRYRAKLWQGLCHQEHEMLDCPAAVLVVVSSTE 105
            WY+RYR +L +GL  +EH +L+CPA +++VVSSTE
Sbjct:  126 WYRRYREELEEGLSGREHTLLECPAVLMMVVSSTE 160
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BLAST of mRNA_S-dermatodea_contig9271.17330.1 vs. uniprot
Match: I2CPV3_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPV3_NANGC)

HSP 1 Score: 47.0 bits (110), Expect = 4.830e-5
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 WYKRYRAKLWQGLCHQEHEMLDCPAAVLVVVSSTE 105
            WY+R+RA L Q L + E EML CPAA+LVVVSS++
Sbjct:  139 WYRRFRASLRQSLHYVEPEMLRCPAALLVVVSSSD 173
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BLAST of mRNA_S-dermatodea_contig9271.17330.1 vs. uniprot
Match: W7U1S1_9STRA (TRAPP III complex, Trs85 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1S1_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 6.280e-5
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 WYKRYRAKLWQGLCHQEHEMLDCPAAVLVVVSSTE 105
            WY+R+RA L Q L + E EML CPAA+LVVVSS++
Sbjct:  139 WYRRFRASLRQSLHYVEPEMLRCPAALLVVVSSSD 173
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9271.17330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FQP3_ECTSI1.460e-1597.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPY7_9PHAE1.610e-1594.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YYI3_9STRA6.990e-657.14ER-golgi trafficking TRAPP I complex 85 kDa subuni... [more]
I2CPV3_NANGC4.830e-562.86Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
W7U1S1_9STRA6.280e-562.86TRAPP III complex, Trs85 n=3 Tax=Monodopsidaceae T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9271contigS-dermatodea_contig9271:8453..8557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog2880.D7FQP3
Preferred nameTRAPPC8
KEGG koko:K05750,ko:K11268,ko:K20305
KEGG Pathwayko04810,map04810
GOsGO:0000003,GO:0000045,GO:0000407,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006914,GO:0006996,GO:0007030,GO:0007033,GO:0007049,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0016237,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0022414,GO:0022607,GO:0030008,GO:0030242,GO:0031267,GO:0031410,GO:0031982,GO:0032258,GO:0032991,GO:0033036,GO:0033365,GO:0034497,GO:0034613,GO:0034727,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0045184,GO:0046907,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0070925,GO:0071255,GO:0071702,GO:0071705,GO:0071840,GO:0072665,GO:0097708,GO:0098772,GO:0099023,GO:1905037,GO:1990072
EggNOG free text desc.autophagy of peroxisome
EggNOG OGsKOG1938@1,KOG1938@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size105
Cds size105
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925397.814308-CDS-S-dermatodea_contig9271:8452..85571622925397.814308-CDS-S-dermatodea_contig9271:8452..8557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9271 8453..8557 +
1694079906.3406594-CDS-S-dermatodea_contig9271:8452..85571694079906.3406594-CDS-S-dermatodea_contig9271:8452..8557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9271 8453..8557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9271.17330.1prot_S-dermatodea_contig9271.17330.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9271 8453..8557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9271.17330.1

>prot_S-dermatodea_contig9271.17330.1 ID=prot_S-dermatodea_contig9271.17330.1|Name=mRNA_S-dermatodea_contig9271.17330.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=35bp
WYKRYRAKLWQGLCHQEHEMLDCPAAVLVVVSSTE
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mRNA from alignment at S-dermatodea_contig9271:8453..8557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9271.17330.1 ID=mRNA_S-dermatodea_contig9271.17330.1|Name=mRNA_S-dermatodea_contig9271.17330.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=105bp|location=Sequence derived from alignment at S-dermatodea_contig9271:8453..8557+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGTACAAGCGCTACCGAGCGAAGCTGTGGCAGGGCCTGTGCCACCAGGA
GCACGAGATGCTTGACTGCCCGGCGGCCGTGCTGGTTGTGGTCTCCAGCA
CCGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9271:8453..8557+

>mRNA_S-dermatodea_contig9271.17330.1 ID=mRNA_S-dermatodea_contig9271.17330.1|Name=mRNA_S-dermatodea_contig9271.17330.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=210bp|location=Sequence derived from alignment at S-dermatodea_contig9271:8453..8557+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGTACAAGCGCTACCGAGCGAAGCTGTGGCAGGGCCTGTGCCACCAGGA
GCACGAGATGCTTGACTGCCCGGCGGCCGTGCTGGTTGTGGTCTCCAGCA
CCGAGTGGTACAAGCGCTACCGAGCGAAGCTGTGGCAGGGCCTGTGCCAC
CAGGAGCACGAGATGCTTGACTGCCCGGCGGCCGTGCTGGTTGTGGTCTC
CAGCACCGAG
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