mRNA_S-dermatodea_contig9262.17320.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9262.17320.1
Unique NamemRNA_S-dermatodea_contig9262.17320.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9262.17320.1 vs. uniprot
Match: A0A6H5JMY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMY3_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.820e-37
Identity = 96/155 (61.94%), Postives = 113/155 (72.90%), Query Frame = 3 
Query:  153 MGKSGRTLLVALLALLVSPDVLGFSISPAGARRTGGSRWAAGRARSSGAVASVSMQAGESSYDGLVNRVETASKAPKVAPPAFRSQEPDAPVSIAEVQQQTASTAKVVTEQ-RAPAAAAGGDGQAYDSAVSIGSTGLQVVEGLAVLAAVPAILAA 614
            MGKSGRTLLVALLALLVSPDVLGFS+SPAGARR+      A R +   A  +++M A +  +D LV+RVETA+KAP  + P F+SQE DAP +IAEV++Q A          R P+  A G GQAYDSAVS+GS GLQVVEGLAVLAAVPAIL A
Sbjct:    1 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKRLSAARTLNMAA-DPRFDSLVDRVETAAKAPVESVPVFKSQEADAPATIAEVKEQVAPXXXXXXXXXRPPSVLAAGSGQAYDSAVSVGSVGLQVVEGLAVLAAVPAILTA 154
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BLAST of mRNA_S-dermatodea_contig9262.17320.1 vs. uniprot
Match: D8LKJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ5_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.910e-32
Identity = 90/155 (58.06%), Postives = 107/155 (69.03%), Query Frame = 3 
Query:  153 MGKSGRTLLVALLALLVSPDVLGFSISPAGARRTGGSRWAAGRARSSGAVASVSMQAGESSYDGLVNRVETASKAPKVAPPAFRSQEPDAPVSIAEVQQQTASTAKVVTEQRAPAAAAGGDGQ-AYDSAVSIGSTGLQVVEGLAVLAAVPAILAA 614
            MGKSGRTLLVALLALLVSPDVLGFS+SPAGARR+      A R + S A  +++M A +  +DGLV+RVETA+KAP+ + P F+SQE DAP +IAEV++Q                        AYDSAVS+GS GLQV EGLAVLAAVPAIL A
Sbjct:    1 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKRSSAARTLNMAA-DPRFDGLVDRVETAAKAPRESIPVFKSQEADAPATIAEVKEQVXXXXXXXXXXXXXXXXXXXXXXXAYDSAVSVGSVGLQVAEGLAVLAAVPAILTA 154
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9262.17320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMY3_9PHAE1.820e-3761.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKJ5_ECTSI1.910e-3258.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9262contigS-dermatodea_contig9262:4307..8488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003190.1
Exons2
Model size614
Cds size462
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9262.17320.1prot_S-dermatodea_contig9262.17320.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9262 4459..8488 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925397.222206-UTR-S-dermatodea_contig9262:4306..44581622925397.222206-UTR-S-dermatodea_contig9262:4306..4458Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9262 4307..4458 +
1694079905.962516-UTR-S-dermatodea_contig9262:4306..44581694079905.962516-UTR-S-dermatodea_contig9262:4306..4458Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9262 4307..4458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925397.2329986-CDS-S-dermatodea_contig9262:4458..46491622925397.2329986-CDS-S-dermatodea_contig9262:4458..4649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9262 4459..4649 +
1694079905.972135-CDS-S-dermatodea_contig9262:4458..46491694079905.972135-CDS-S-dermatodea_contig9262:4458..4649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9262 4459..4649 +
1622925397.2459102-CDS-S-dermatodea_contig9262:8217..84881622925397.2459102-CDS-S-dermatodea_contig9262:8217..8488Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9262 8218..8488 +
1694079905.9824965-CDS-S-dermatodea_contig9262:8217..84881694079905.9824965-CDS-S-dermatodea_contig9262:8217..8488Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9262 8218..8488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9262.17320.1

>prot_S-dermatodea_contig9262.17320.1 ID=prot_S-dermatodea_contig9262.17320.1|Name=mRNA_S-dermatodea_contig9262.17320.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=154bp
MGKSGRTLLVALLALLVSPDVLGFSISPAGARRTGGSRWAAGRARSSGAV
ASVSMQAGESSYDGLVNRVETASKAPKVAPPAFRSQEPDAPVSIAEVQQQ
TASTAKVVTEQRAPAAAAGGDGQAYDSAVSIGSTGLQVVEGLAVLAAVPA
ILAA
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mRNA from alignment at S-dermatodea_contig9262:4307..8488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9262.17320.1 ID=mRNA_S-dermatodea_contig9262.17320.1|Name=mRNA_S-dermatodea_contig9262.17320.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4182bp|location=Sequence derived from alignment at S-dermatodea_contig9262:4307..8488+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACCCGCTGCTTTCTGCTTCGCCCTTGACTCTTGAGCTCTCGTTGCGTG
TGCTTCTCCCACTCGAGACAGAGCACCAGAGCCACGCAACGCTCAGAGCA
GCAGAGATCCCCCGCGGTCCATCCACAGGCGGGCGCTGAACTCAAACCAA
GCATGGGCAAGTCAGGGCGAACGCTCCTGGTAGCGCTTCTCGCGCTCCTT
GTATCTCCTGATGTGCTGGGGTTCAGCATCAGCCCTGCCGGCGCACGCCG
GACAGGCGGGTCGCGGTGGGCCGCGGGACGGGCGAGGTCATCCGGTGCGG
TCGCGTCCGTCAGCATGCAGGCGGGAGAGTCGAGTTACGATGGGTGAGCG
AGGTTGTGTGTGGGTGCGCATGCTGTGTGTGTGGGCCCCACGATTCAAAG
GGAGCTTGGTGTGTATGATGCCCCGTGAATAGCGCTACAGTATCATATAA
TACGTACACAGGTAGCAGTTTGGCTGCTGCTCATGCTGCTATAGATATGG
GGCAACATCGATCTTTGTGAGATGCGGAGGGGGGCTTGGGGGCTGTAAGT
CATAGGATACATGTGCCAATAGCACCACAGCTATTGCACCTGCAAATGGG
TGCCGCTGTCGCCCAACTTGGAGGCATGTTGCGGTCAAGCCACAGCACCC
GAAACAAAAAACCAGCCTAAACCGCACACTGCACTACACAGAGAACACCA
TCATATGTAGCTCTACATACCCAGCAGTATCATATTGGTGACACGTCGCA
GGCAGAGCAGCAGGCGCGAGAGCATATCCGCGTTTCCGTTCGAAACGAAC
GCCCTTGCGATACGTCACCGTGTCCAGCCTTACTATGATACTATTATGAC
CCATGACAAGTATACTTGTATACAAGTATGGATACGACGTGGTTGTTGTT
GCTACGCTGGAGATGTCTTGAAAACCGAGCTTTTTCACACGAGTATCGCC
CCGGGTCGAGGCAACTACTACTGCTGTCTGTTGGTGGTGCGTTGCACTAC
ATCAGTGTCCATATGGGTGGTGCCTCGCATTTTAGTCGAGGCGGTAAGCG
GCGCTTCCGCAGCTACCCTGTTTGTGTGGCGACGCGTTTTGCGCTGGCTG
GCGGTCGGTTTGAGAGTTGTTTTTTCTGGGGTGGAGCCTCCGCTCGCTCG
TGCTCTCGCTCTCGGGGCTGATAAATCTGATTTTGCGATGCGACATCATA
TATCGTACCGATTCATCATTTTATTATCTTGCCTTCGGACCATAATGTAC
AGACAGTATTAATAGTAGCACGCAGCCGAGACTGCAATACAAGTGCATCG
ACATATAGCAGGGGCCGACCCGGCCGGCTTCGTGTTGAGATTGGATCAAT
GTGGAAAGGTCGGCTTTTCTTCCTCAAACCTATTATGAAGAAAAAAAGGT
GTCCCTGCCGACTATTAAAACTGCTGTGTTGTTGGATTAGGGGGTTTGTG
GTAGCCGGGCGAGTCAGTATTATCGACTGCCGCGCGTGAGTGCCGTGTAT
AGTTAGTTTGTATGTGCAGTAGTATCATAGAGTGCAGCAGGCCCCTCAAG
GCGCATGGCAATGTTAAGTTAATGTTTGGATGTCGGATACGAGGACACAC
CCACATGCGCCGCGTGTAGAGAGTCAGTGTGGTGGAGACAAAATAATTCA
GAATTCTTGTTGCAGCATTCGATCTGCGTGTGCGTGCTGTCATACATATT
TCGGTCCACGAGCGAAACGCCTGCTTGGGAGTCGCAATCCCACTTGCAGC
TTGCAGGCGACGTGCTTGTTGCCCGGGGGCGAGCAGGCGCCATAGCGGCC
TCATCGGTTCCCGTTCGAAGCCCTTTGAAACAGGCTGATGACGTTGGGGA
TTTAGTACAATAACTTGACTGTTTTATAACAAGCAAATTCTATAATTCTC
TCGGACTGGACTTTGGCTCCACAGCAACAGCAACAGCAGTTATTAATTAT
TACTATGGGTCCAGCACTACTTGGTATGACAGCAGGAGCGCTCGACTTGC
AAGGTTAATTAATTAGTTGACCCTTATGTATAGGACTGAGTGTGCTTTCC
TCGAGTATCTTCAGTACAGAAGAGTACCGGTATAGAGCTATGCACCTATT
ATACAACAAGTGCACCGCACCGTGCATCTTATCCCCAACTACATGTGTAG
AAGCCAAGCTTGGCGGGGCTAGGGTTGTGATGACTCTCCCACCGCCACTA
CAGCAGTACCATGCGGCAAATAATGGCAACCGCTCGGGTCTACTACTACT
ACTACTACTACTACTACTACTACAGTACTACTATTACTAGTACTACTATT
ACTACCATTACTACTACTGCTATATATTACTCTATTACTACTACTTCTCC
CACTACTACTATTACTATTACTACTATTTACTACTACTACCATTACTATT
ACTACTACCACTACAGTACTGTGAGTGACACGTTACTAGACTACTATTAC
TATTACTAGTACTAATACTACTACTAATACTACTGTACCGGTACCTGTTT
GGATGTGTGAAATACAAGTGCGGGCAGGCAGACAGATGGTGCTGTATGTA
CCGAGGGGGGACTCAGCTAAAAAAAAAGAGAGAAAAAATTAGGTGTTGAT
CGATTGAGAGCCCCTCTCGTGAGCATAAGTGCTTGCGGGACATCTCAAAA
ACGGACTCAGAGTCCCAAAAGGGTTAAATCAATTAGTCGATCAATCGATC
AATGAATCAATCAATTAATCGGTTAACCCTTTTGGGACCAAGCCTGCTGT
TATTGGGGTCATCTCTAAAACGGACTCAGTCCCAAGAGGGTTAATCAAAT
AACCGATCAATCAATCAATCAATTATCAGTCCCAAAAGGGTTAATCGATC
AATCAATCAATTAATCAGTTAACCCTTTTTAAACCGAGCCTGTTATTGGG
GTCATCTCTAACACGGACTCAGGCCCAATAGGGTTAATCAATTAGTCGAT
CAATCAATCAATCAATCAATCAATTATCAATCCCAAAAGGGTTAATCGAT
TAATCGATCAATGACTCAATCAACTAATCAGTTAACCCTTTTGGAACCGA
GCCTGTAATTGGGGTCATCTCTAAAACGGACTCTGTCCCAAGAGGGTCAC
TAGCTCTAAGGGAGACCGATATAGGGTGTCATACTGTACGTCCTATACTC
TCTCAGTAAGGTGGTAGGTGAAAGGGGGGAGTTTAAAGGTTCGACAAACC
AAATAGAGCTGATGTGCATGAATACGATACTGTGTGATGCTGTACATCGC
GCCACAAACCAAACGCCATCCCCAAGTTGTTGATCGATCTTGCTGTGGCG
TAATCGCGGCTTTATCATACTCGATTATGATTTGGTAGTATAATATGACA
ATCGCTTCATATTATATTCAGTACAACAACAACGACATTCCACTTTCCAA
AAACCCAGCCGTCAAATACGACCAACACACCAACAAGCCCCCCCTGACAC
AAGCCCCCACCCCACCCCACCCCCGCCTAATGAACTAATGAACTAATGGC
ATATCGGTTGACCTCGCAAGCGCAAAGATGACGGCTTCTTGTAGCAAGCA
GCTGTGAAACGCAGCCTGGCCGGCGAAAGCCCGGCATTTAATGAACTAAT
GGCATATCGGTTGACCTCGCAAGCGCAAAGATGACGGCTTCTTGTAGCAA
GCAGCTGTGAAACGCAGCCTGGCCGGCGAAAGCCCGGCATATATTCCCCT
TCCAGCATTATTGGGATATGGGATGCGTGGTCTATGTCCGTTTGGATACC
GTATGCGTTTAACGTAAGTACCCCCCCCCGCCCCCCTCTCCCCTCTCCCC
TCCTCCCCCCCCCCCTCCAACCCCTCCCCTGGAACCGCCGCCGTCGTTCG
AACGCCACAATAAATATATATAAATAAAAAAAATCCCACACACACACCCG
AAACACACAAGACTGGTGAACCGCGTTGAAACCGCGTCCAAGGCCCCCAA
GGTCGCCCCCCCGGCCTTCAGGAGTCAGGAGCCGGACGCCCCCGTGTCGA
TCGCGGAGGTACAGCAGCAGACCGCGTCCACAGCGAAGGTGGTGACAGAG
CAGCGCGCTCCGGCGGCGGCGGCGGGTGGCGACGGTCAGGCGTACGACTC
GGCCGTTTCGATCGGCTCGACGGGTTTGCAGGTCGTGGAAGGCCTGGCGG
TTCTGGCGGCTGTGCCGGCTATTCTTGCTGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9262:4307..8488+

>mRNA_S-dermatodea_contig9262.17320.1 ID=mRNA_S-dermatodea_contig9262.17320.1|Name=mRNA_S-dermatodea_contig9262.17320.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at S-dermatodea_contig9262:4307..8488+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCAAGTCAGGGCGAACGCTCCTGGTAGCGCTTCTCGCGCTCCTTGT
ATCTCCTGATGTGCTGGGGTTCAGCATCAGCCCTGCCGGCGCACGCCGGA
CAGGCGGGTCGCGGTGGGCCGCGGGACGGGCGAGGTCATCCGGTGCGGTC
GCGTCCGTCAGCATGCAGGCGGGAGAGTCGAGTTACGATGGATGGGCAAG
TCAGGGCGAACGCTCCTGGTAGCGCTTCTCGCGCTCCTTGTATCTCCTGA
TGTGCTGGGGTTCAGCATCAGCCCTGCCGGCGCACGCCGGACAGGCGGGT
CGCGGTGGGCCGCGGGACGGGCGAGGTCATCCGGTGCGGTCGCGTCCGTC
AGCATGCAGGCGGGAGAGTCGAGTTACGATGGACTGGTGAACCGCGTTGA
AACCGCGTCCAAGGCCCCCAAGGTCGCCCCCCCGGCCTTCAGGAGTCAGG
AGCCGGACGCCCCCGTGTCGATCGCGGAGGTACAGCAGCAGACCGCGTCC
ACAGCGAAGGTGGTGACAGAGCAGCGCGCTCCGGCGGCGGCGGCGGGTGG
CGACGGTCAGGCGTACGACTCGGCCGTTTCGATCGGCTCGACGGGTTTGC
AGGTCGTGGAAGGCCTGGCGGTTCTGGCGGCTGTGCCGGCTATTCTTGCT
GCCACTGGTGAACCGCGTTGAAACCGCGTCCAAGGCCCCCAAGGTCGCCC
CCCCGGCCTTCAGGAGTCAGGAGCCGGACGCCCCCGTGTCGATCGCGGAG
GTACAGCAGCAGACCGCGTCCACAGCGAAGGTGGTGACAGAGCAGCGCGC
TCCGGCGGCGGCGGCGGGTGGCGACGGTCAGGCGTACGACTCGGCCGTTT
CGATCGGCTCGACGGGTTTGCAGGTCGTGGAAGGCCTGGCGGTTCTGGCG
GCTGTGCCGGCTATTCTTGCTGCC
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