mRNA_S-dermatodea_contig9261.17317.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9261.17317.1
Unique NamemRNA_S-dermatodea_contig9261.17317.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9261.17317.1 vs. uniprot
Match: D7FQ38_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ38_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 5.500e-56
Identity = 80/85 (94.12%), Postives = 84/85 (98.82%), Query Frame = 1
Query:   19 IEVLVAEMPEDLQQKAKRRVCIAMDKYDIEKDIATDVKKHFDEGCEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 273
            IEVL+AE+PE+LQQKAKRRVC+AMDKYDIEKDIATDVKKHFDE CEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE
Sbjct:   20 IEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 104          
BLAST of mRNA_S-dermatodea_contig9261.17317.1 vs. uniprot
Match: A0A7S2RLM3_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLM3_9STRA)

HSP 1 Score: 103 bits (257), Expect = 8.850e-27
Identity = 47/79 (59.49%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   37 EMPEDLQQKAKRRVCIAMDKYDIEKDIATDVKKHFDEGCEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 273
            ++PE++ +KA  +   AMD++ IEKDIAT +K  FD+   G+WHCV+GRSFGCSVTHETK+L FF+ DQ +VLLFCS E
Sbjct:   20 DIPEEMCRKAIGKANEAMDQHTIEKDIATAIKTSFDKDYGGTWHCVAGRSFGCSVTHETKYLVFFQLDQTYVLLFCSDE 98          
BLAST of mRNA_S-dermatodea_contig9261.17317.1 vs. uniprot
Match: A0A7S2UW34_9STRA (Dynein light chain n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW34_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.070e-26
Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 1
Query:   19 IEVLVAEMPE----DLQQKAKRRVCIAMDKYDIEKDIATDVKKHFDEGCEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 273
            + +L AE PE    DLQ+ A R+V  ++ K+ I KD+AT+VK+HFDE   G+WHCV GR+FGCSVT+ET++L FFK +Q FVLLF S E
Sbjct:   17 VVILRAEFPEVKGEDLQEDAIRKVDESLTKHTISKDVATEVKRHFDEKYGGTWHCVVGRNFGCSVTNETRYLLFFKIEQTFVLLFKSQE 105          
BLAST of mRNA_S-dermatodea_contig9261.17317.1 vs. uniprot
Match: A0A7S1U8R4_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8R4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.150e-24
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   19 IEVLVAEMPEDLQQKAKRRVCIAMDKYDIEKDIATDVKKHFDEGCEGSWHCVSGRSFGCSVTHETKHLFFFKCDQM 246
            + VL AEMPEDL+ KA      A+D +++EKD+A  VKK FDE   G+WHCV GR+FGCS+THETK+L FFK DQ+
Sbjct:   13 LRVLKAEMPEDLKTKAAEVGNQALDAHEVEKDVAQFVKKAFDEASPGTWHCVVGRNFGCSITHETKYLIFFKLDQV 88          
BLAST of mRNA_S-dermatodea_contig9261.17317.1 vs. uniprot
Match: A0A835YLR1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR1_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.160e-22
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 1
Query:   37 EMPEDLQQKAKRRVCIAMDKYDIEKDIATDVKKHFDEGCEGSWHCVSGRSFGCSVTHETKHLFFFK 234
            ++PE LQ+KA  RV   + +  + KDIA+D+KKHFD+ C G+WHCV GRSFGCSVTHETK+L FF+
Sbjct:   10 DIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 75          
BLAST of mRNA_S-dermatodea_contig9261.17317.1 vs. uniprot
Match: A0A448WG77_9PLAT (Dynein light chain n=2 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A448WG77_9PLAT)

HSP 1 Score: 91.3 bits (225), Expect = 3.600e-22
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   34 AEMPEDLQQKAKRRVCIAMDKYDIEKDIATDVKKHFDEGCEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 267
            A+MPED+Q +A R    AMDKY+IEKDIA  +KK FD+    +WHC+ GR+FG  VTHETKH  +F   Q+ VLLF S
Sbjct:   13 ADMPEDMQAEAVRCCADAMDKYNIEKDIAAYLKKEFDKRYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKS 90          
BLAST of mRNA_S-dermatodea_contig9261.17317.1 vs. uniprot
Match: A0A8J4SJY8_9TREM (Dynein light chain n=2 Tax=Paragonimus TaxID=34503 RepID=A0A8J4SJY8_9TREM)

HSP 1 Score: 87.8 bits (216), Expect = 7.950e-21
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   34 AEMPEDLQQKAKRRVCIAMDKYDIEKDIATDVKKHFDEGCEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 267
            A+MPED+QQ A      A++KY+IEKDIA  +KK FD+    +WHCV GR+FG  VTHETKH  +F   Q+ +LLF S
Sbjct:   11 ADMPEDMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKHNPTWHCVVGRNFGSYVTHETKHFIYFYIGQVAILLFKS 88          
BLAST of mRNA_S-dermatodea_contig9261.17317.1 vs. uniprot
Match: A0A0R3WWJ5_HYDTA (Dynein light chain n=2 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WWJ5_HYDTA)

HSP 1 Score: 88.2 bits (217), Expect = 9.960e-21
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    1 MSPGAQIEVLV--AEMPEDLQQKAKRRVCIAMDKYDIEKDIATDVKKHFDEGCEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 267
            MS G+Q + +V  A+M ED+QQ+A      AM+KY++EKDIA  +KK FD     +WHC+ GR+FG  VTHETKH  +F   Q+ +LLF S
Sbjct:   19 MSYGSQNKAVVKNADMAEDMQQRAVDCAQDAMNKYNVEKDIAAHIKKEFDRLYSPTWHCIVGRNFGSYVTHETKHFIYFYMGQVAILLFKS 109          
BLAST of mRNA_S-dermatodea_contig9261.17317.1 vs. uniprot
Match: A0A7S2CC43_9STRA (Dynein light chain n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CC43_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.240e-20
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   43 PEDLQQKAKRRVCIAMDKYDIEKDIATDVKKHFDEGCEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 267
            P ++ + A  ++  A+DK+ IEKD+AT VK  FD+   G+WHC+ G+SFGCS+THETK+L + + D +F LLFCS
Sbjct:   28 PNNMCELAVEKLDEAIDKHTIEKDMATAVKTTFDKDYGGTWHCIVGKSFGCSITHETKYLMYIQVDHLFCLLFCS 102          
BLAST of mRNA_S-dermatodea_contig9261.17317.1 vs. uniprot
Match: H3BFR6_LATCH (Dynein light chain n=6 Tax=Eukaryota TaxID=2759 RepID=H3BFR6_LATCH)

HSP 1 Score: 87.8 bits (216), Expect = 1.620e-20
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   34 AEMPEDLQQKAKRRVCIAMDKYDIEKDIATDVKKHFDEGCEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 267
            A+MPED+QQ A      A++KY+IEKDIA  +KK FD+    +WHC+ GR+FG  VTHETKH  +F   Q+ +LLF S
Sbjct:   37 ADMPEDMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 114          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9261.17317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ38_ECTSI5.500e-5694.12Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S2RLM3_9STRA8.850e-2759.49Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A7S2UW34_9STRA2.070e-2656.18Dynein light chain n=1 Tax=Fibrocapsa japonica Tax... [more]
A0A7S1U8R4_9STRA1.150e-2459.21Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A835YLR1_9STRA1.160e-2260.61Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A448WG77_9PLAT3.600e-2256.41Dynein light chain n=2 Tax=Protopolystoma xenopodi... [more]
A0A8J4SJY8_9TREM7.950e-2153.85Dynein light chain n=2 Tax=Paragonimus TaxID=34503... [more]
A0A0R3WWJ5_HYDTA9.960e-2149.45Dynein light chain n=2 Tax=Hydatigena taeniaeformi... [more]
A0A7S2CC43_9STRA1.240e-2050.67Dynein light chain n=1 Tax=Dictyocha speculum TaxI... [more]
H3BFR6_LATCH1.620e-2052.56Dynein light chain n=6 Tax=Eukaryota TaxID=2759 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9261contigS-dermatodea_contig9261:5243..5975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.8
Seed ortholog evalue4.7e-42
Seed eggNOG ortholog2880.D7FQ38
KEGG koko:K10418
KEGG Pathwayko04962,map04962
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDynein light chain
Ec32 orthologEc-01_007600.1
Exons2
Model size276
Cds size276
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925397.0577404-CDS-S-dermatodea_contig9261:5242..54161622925397.0577404-CDS-S-dermatodea_contig9261:5242..5416Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9261 5243..5416 +
1694079905.877841-CDS-S-dermatodea_contig9261:5242..54161694079905.877841-CDS-S-dermatodea_contig9261:5242..5416Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9261 5243..5416 +
1622925397.0702984-CDS-S-dermatodea_contig9261:5873..59751622925397.0702984-CDS-S-dermatodea_contig9261:5873..5975Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9261 5874..5975 +
1694079905.892321-CDS-S-dermatodea_contig9261:5873..59751694079905.892321-CDS-S-dermatodea_contig9261:5873..5975Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9261 5874..5975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9261.17317.1prot_S-dermatodea_contig9261.17317.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9261 5243..5975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9261.17317.1

>prot_S-dermatodea_contig9261.17317.1 ID=prot_S-dermatodea_contig9261.17317.1|Name=mRNA_S-dermatodea_contig9261.17317.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=92bp
MSPGAQIEVLVAEMPEDLQQKAKRRVCIAMDKYDIEKDIATDVKKHFDEG
CEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE*
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mRNA from alignment at S-dermatodea_contig9261:5243..5975+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9261.17317.1 ID=mRNA_S-dermatodea_contig9261.17317.1|Name=mRNA_S-dermatodea_contig9261.17317.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=733bp|location=Sequence derived from alignment at S-dermatodea_contig9261:5243..5975+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGCCTGGTGCACAGATTGAGGTCCTTGTGGCAGAAATGCCAGAAGA TTTACAGCAGAAGGCGAAGCGACGAGTCTGCATCGCGATGGACAAGTACG ACATCGAAAAGGACATAGCTACAGACGTGAAGAAGCACTTTGATGAAGGT TGCGAAGGCTCCTGGCATTGCGTGGTGAGAAAAAGAGCTCGCCCAATTCC GATCCCCTGAATGAACTCGTGCGGAGAGGATTTTTCACGTGTCAAATTCC GTTGGTGAGGCGGGTTCAACTCTGAAACCAGCGAGGCCAACTTGACAACG GCGATACTGTAGATACCAGTACTACCTTCGGTTTTTCGGAGTCCCAAACG CTTACTTTGTAGATAACCTCAGACGCGCACTTAGACCGCATTTTCGAAGA TGGGCGAAAAAACTGATCGGGATCCACGGCCTCTCGCCAATATCTTCACA CAAGCTACGAACCACTTGATTGCTTGATTGAATTAATGAACCGATAGTCG TTCTCTGTACAGCCGCCCCACCACGCCCATCATGACTTGTGTTGCCCAAA CGCAGCAACGTTTTCTCTCCTCTTCCTCCTTGTGTACACACGCATATATA CATGTCTCGGCCGTGGCAACGACGACCCAAGTCTGGACGAAGTTTTGGGT GCTCGGTGACCCACGAAACGAAGCACCTCTTCTTCTTCAAGTGCGACCAG ATGTTCGTCCTGCTCTTTTGCTCCCCGGAGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9261:5243..5975+

>mRNA_S-dermatodea_contig9261.17317.1 ID=mRNA_S-dermatodea_contig9261.17317.1|Name=mRNA_S-dermatodea_contig9261.17317.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at S-dermatodea_contig9261:5243..5975+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGCCTGGTGCACAGATTGAGGTCCTTGTGGCAGAAATGCCAGAAGA
TTTACAGCAGAAGGCGAAGCGACGAGTCTGCATCGCGATGGACAAGTACG
ACATCGAAAAGGACATAGCTACAGACGTGAAGAAGCACTTTGATGAAGGT
TGCGAAGGCTCCTGGCATTGCGTGATGTCGCCTGGTGCACAGATTGAGGT
CCTTGTGGCAGAAATGCCAGAAGATTTACAGCAGAAGGCGAAGCGACGAG
TCTGCATCGCGATGGACAAGTACGACATCGAAAAGGACATAGCTACAGAC
GTGAAGAAGCACTTTGATGAAGGTTGCGAAGGCTCCTGGCATTGCGTGTC
TGGACGAAGTTTTGGGTGCTCGGTGACCCACGAAACGAAGCACCTCTTCT
TCTTCAAGTGCGACCAGATGTTCGTCCTGCTCTTTTGCTCCCCGGAGTAG
TCTGGACGAAGTTTTGGGTGCTCGGTGACCCACGAAACGAAGCACCTCTT
CTTCTTCAAGTGCGACCAGATGTTCGTCCTGCTCTTTTGCTCCCCGGAGT
AG
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