mRNA_S-dermatodea_contig9261.17316.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9261.17316.1
Unique NamemRNA_S-dermatodea_contig9261.17316.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9261.17316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9261contigS-dermatodea_contig9261:2678..3508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size831
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9261.17316.1prot_S-dermatodea_contig9261.17316.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9261 2703..3188 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925396.9946609-UTR-S-dermatodea_contig9261:2677..27021622925396.9946609-UTR-S-dermatodea_contig9261:2677..2702Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9261 2678..2702 +
1694079905.8498747-UTR-S-dermatodea_contig9261:2677..27021694079905.8498747-UTR-S-dermatodea_contig9261:2677..2702Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9261 2678..2702 +
1622925397.0177488-UTR-S-dermatodea_contig9261:3188..35081622925397.0177488-UTR-S-dermatodea_contig9261:3188..3508Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9261 3189..3508 +
1694079905.8683567-UTR-S-dermatodea_contig9261:3188..35081694079905.8683567-UTR-S-dermatodea_contig9261:3188..3508Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9261 3189..3508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925397.007048-CDS-S-dermatodea_contig9261:2702..31881622925397.007048-CDS-S-dermatodea_contig9261:2702..3188Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9261 2703..3188 +
1694079905.859295-CDS-S-dermatodea_contig9261:2702..31881694079905.859295-CDS-S-dermatodea_contig9261:2702..3188Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9261 2703..3188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9261.17316.1

>prot_S-dermatodea_contig9261.17316.1 ID=prot_S-dermatodea_contig9261.17316.1|Name=mRNA_S-dermatodea_contig9261.17316.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=162bp
MMECGPSMWRSLSLRVSYVEEEKLRFFLQSAAIRKSGELVCIDSMILQSR
MIAQTSLVEAGATLVLLVVCSLGIEGRAEPRRVSGMQRKTSWWSCLFFRV
VRLEGCFVQTVRLKRIVYLVCIEARRRGRVRLLLSSCLVVGEKKLAVISP
IHSFDSLLFFR*
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mRNA from alignment at S-dermatodea_contig9261:2678..3508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9261.17316.1 ID=mRNA_S-dermatodea_contig9261.17316.1|Name=mRNA_S-dermatodea_contig9261.17316.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=831bp|location=Sequence derived from alignment at S-dermatodea_contig9261:2678..3508+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTAGCCTTATGTCATTTTAATAGTATGATGGAGTGTGGTCCCAGTATGT
GGCGTTCGCTATCGCTACGAGTGTCATATGTAGAGGAGGAAAAATTACGT
TTTTTTTTGCAGTCGGCCGCGATTCGAAAATCGGGAGAGCTCGTGTGTAT
TGATAGTATGATACTCCAGTCACGTATGATAGCTCAAACAAGTTTGGTAG
AAGCTGGTGCTACATTAGTATTACTAGTTGTTTGTTCGCTTGGGATTGAG
GGGCGAGCCGAGCCGAGACGAGTTTCGGGCATGCAACGAAAAACATCATG
GTGGTCTTGTTTGTTTTTTCGTGTCGTACGATTAGAGGGTTGTTTTGTAC
AGACAGTCAGGTTGAAGCGGATCGTTTATTTGGTATGCATAGAAGCTCGG
AGACGGGGAAGAGTTCGTTTATTATTATCGAGTTGTCTTGTGGTCGGTGA
GAAAAAGCTTGCCGTTATTTCACCCATTCATTCATTTGATTCATTGTTGT
TTTTTCGATAGTTGCCGTTGGGGGGGGGTCACTTGCGTGGTCGACGCAAG
CGAACCCGTTTTGTTTCAATCGGCGAGGTGGATGTATATGGCGTGGTTTA
ATGAGGGTCGGGGGCGGTGAGCGCGGCCGGGCCGATCGGAAAGAGAATGA
AGGAGGGAGGAAGTGTTTTACTGCTATTGTGGATGGAGTTCGTTCGGTAC
AAGTGTTTTTTTATATTTCACAGCTGAGCTGTTTATTTTCGTGTACACAC
CACACGTGTTTAGTGATGAGCTGATTACTTTTGATGTGAAAAAACAAAAT
ATCACAAGAGACAATTGAAGCCTTAACAAGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9261:2678..3508+

>mRNA_S-dermatodea_contig9261.17316.1 ID=mRNA_S-dermatodea_contig9261.17316.1|Name=mRNA_S-dermatodea_contig9261.17316.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at S-dermatodea_contig9261:2678..3508+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGAGTGTGGTCCCAGTATGTGGCGTTCGCTATCGCTACGAGTGTC
ATATGTAGAGGAGGAAAAATTACGTTTTTTTTTGCAGTCGGCCGCGATTC
GAAAATCGGGAGAGCTCGTGTGTATTGATAGTATGATACTCCAGTCACGT
ATGATAGCTCAAACAAGTTTGGTAGAAGCTGGTGCTACATTAGTATTACT
AGTTGTTTGTTCGCTTGGGATTGAGGGGCGAGCCGAGCCGAGACGAGTTT
CGGGCATGCAACGAAAAACATCATGGTGGTCTTGTTTGTTTTTTCGTGTC
GTACGATTAGAGGGTTGTTTTGTACAGACAGTCAGGTTGAAGCGGATCGT
TTATTTGGTATGCATAGAAGCTCGGAGACGGGGAAGAGTTCGTTTATTAT
TATCGAGTTGTCTTGTGGTCGGTGAGAAAAAGCTTGCCGTTATTTCACCC
ATTCATTCATTTGATTCATTGTTGTTTTTTCGATAGATGATGGAGTGTGG
TCCCAGTATGTGGCGTTCGCTATCGCTACGAGTGTCATATGTAGAGGAGG
AAAAATTACGTTTTTTTTTGCAGTCGGCCGCGATTCGAAAATCGGGAGAG
CTCGTGTGTATTGATAGTATGATACTCCAGTCACGTATGATAGCTCAAAC
AAGTTTGGTAGAAGCTGGTGCTACATTAGTATTACTAGTTGTTTGTTCGC
TTGGGATTGAGGGGCGAGCCGAGCCGAGACGAGTTTCGGGCATGCAACGA
AAAACATCATGGTGGTCTTGTTTGTTTTTTCGTGTCGTACGATTAGAGGG
TTGTTTTGTACAGACAGTCAGGTTGAAGCGGATCGTTTATTTGGTATGCA
TAGAAGCTCGGAGACGGGGAAGAGTTCGTTTATTATTATCGAGTTGTCTT
GTGGTCGGTGAGAAAAAGCTTGCCGTTATTTCACCCATTCATTCATTTGA
TTCATTGTTGTTTTTTCGATAG
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