mRNA_S-dermatodea_contig9259.17313.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9259.17313.1
Unique NamemRNA_S-dermatodea_contig9259.17313.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9259.17313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9259contigS-dermatodea_contig9259:4676..5154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size481
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925396.818196-CDS-S-dermatodea_contig9259:4675..51521622925396.818196-CDS-S-dermatodea_contig9259:4675..5152Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9259 4676..5152 +
1694079905.7034583-CDS-S-dermatodea_contig9259:4675..51521694079905.7034583-CDS-S-dermatodea_contig9259:4675..5152Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9259 4676..5152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9259.17313.1prot_S-dermatodea_contig9259.17313.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9259 4676..5152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9259.17313.1

>prot_S-dermatodea_contig9259.17313.1 ID=prot_S-dermatodea_contig9259.17313.1|Name=mRNA_S-dermatodea_contig9259.17313.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=159bp
RLKTAVCARALDHKKKPCLGTWGKPTICMIPSFREATDLQELRAQGSDRP
NETGPNRGDGIARPGARKCLSPSQEATSIGRVCKVALPTYTKQLRPNQPK
KKTGTSIYYVLHPKVIMSAVASHFGLLSLLAVTSVASVALTPQMDFPSSC
TSMPSSMTC
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mRNA from alignment at S-dermatodea_contig9259:4676..5154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9259.17313.1 ID=mRNA_S-dermatodea_contig9259.17313.1|Name=mRNA_S-dermatodea_contig9259.17313.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=479bp|location=Sequence derived from alignment at S-dermatodea_contig9259:4676..5154+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGACTCAAGACAGCAGTTTGTGCGCGGGCACTAGACCATAAAAAGAAACC
CTGCCTTGGGACCTGGGGAAAACCTACCATATGTATGATCCCTAGTTTCA
GGGAGGCCACAGATCTACAAGAGCTTAGAGCTCAGGGTAGTGATCGGCCG
AATGAAACAGGGCCGAATCGAGGCGATGGAATCGCGCGACCAGGGGCAAG
GAAGTGTTTATCGCCAAGCCAAGAAGCCACCTCAATCGGAAGAGTGTGCA
AAGTGGCGCTTCCGACATACACCAAGCAACTCCGTCCCAATCAACCCAAG
AAGAAGACAGGAACAAGTATATACTATGTACTTCACCCAAAAGTAATAAT
GTCGGCCGTAGCGTCCCATTTCGGCTTGCTCTCCTTACTTGCAGTCACCT
CGGTGGCCTCAGTAGCGCTGACGCCCCAAATGGATTTCCCGTCAAGCTGC
ACGTCCATGCCGTCGTCCATGACGTGCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9259:4676..5154+

>mRNA_S-dermatodea_contig9259.17313.1 ID=mRNA_S-dermatodea_contig9259.17313.1|Name=mRNA_S-dermatodea_contig9259.17313.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at S-dermatodea_contig9259:4676..5154+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGACTCAAGACAGCAGTTTGTGCGCGGGCACTAGACCATAAAAAGAAACC
CTGCCTTGGGACCTGGGGAAAACCTACCATATGTATGATCCCTAGTTTCA
GGGAGGCCACAGATCTACAAGAGCTTAGAGCTCAGGGTAGTGATCGGCCG
AATGAAACAGGGCCGAATCGAGGCGATGGAATCGCGCGACCAGGGGCAAG
GAAGTGTTTATCGCCAAGCCAAGAAGCCACCTCAATCGGAAGAGTGTGCA
AAGTGGCGCTTCCGACATACACCAAGCAACTCCGTCCCAATCAACCCAAG
AAGAAGACAGGAACAAGTATATACTATGTACTTCACCCAAAAGTAATAAT
GTCGGCCGTAGCGTCCCATTTCGGCTTGCTCTCCTTACTTGCAGTCACCT
CGGTGGCCTCAGTAGCGCTGACGCCCCAAATGGATTTCCCGTCAAGCTGC
ACGTCCATGCCGTCGTCCATGACGTGCAGACTCAAGACAGCAGTTTGTGC
GCGGGCACTAGACCATAAAAAGAAACCCTGCCTTGGGACCTGGGGAAAAC
CTACCATATGTATGATCCCTAGTTTCAGGGAGGCCACAGATCTACAAGAG
CTTAGAGCTCAGGGTAGTGATCGGCCGAATGAAACAGGGCCGAATCGAGG
CGATGGAATCGCGCGACCAGGGGCAAGGAAGTGTTTATCGCCAAGCCAAG
AAGCCACCTCAATCGGAAGAGTGTGCAAAGTGGCGCTTCCGACATACACC
AAGCAACTCCGTCCCAATCAACCCAAGAAGAAGACAGGAACAAGTATATA
CTATGTACTTCACCCAAAAGTAATAATGTCGGCCGTAGCGTCCCATTTCG
GCTTGCTCTCCTTACTTGCAGTCACCTCGGTGGCCTCAGTAGCGCTGACG
CCCCAAATGGATTTCCCGTCAAGCTGCACGTCCATGCCGTCGTCCATGAC
GTGC
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