mRNA_S-dermatodea_contig9259.17312.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9259.17312.1
Unique NamemRNA_S-dermatodea_contig9259.17312.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9259.17312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9259contigS-dermatodea_contig9259:3690..4519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size830
Cds size456
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925396.7682526-UTR-S-dermatodea_contig9259:3689..40631622925396.7682526-UTR-S-dermatodea_contig9259:3689..4063Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9259 3690..4063 +
1694079905.6748037-UTR-S-dermatodea_contig9259:3689..40631694079905.6748037-UTR-S-dermatodea_contig9259:3689..4063Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9259 3690..4063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925396.7848747-CDS-S-dermatodea_contig9259:4063..45191622925396.7848747-CDS-S-dermatodea_contig9259:4063..4519Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9259 4064..4519 +
1694079905.684601-CDS-S-dermatodea_contig9259:4063..45191694079905.684601-CDS-S-dermatodea_contig9259:4063..4519Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9259 4064..4519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9259.17312.1prot_S-dermatodea_contig9259.17312.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9259 4064..4519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9259.17312.1

>prot_S-dermatodea_contig9259.17312.1 ID=prot_S-dermatodea_contig9259.17312.1|Name=mRNA_S-dermatodea_contig9259.17312.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=152bp
MTMLTSSDLAVHIEQSRPKNSKANNVLAYENNVACLCQPASDLARGSDRV
KARVLAGFINKPTAMYGVLCFPSCCTRRASFYSSVTPDRPNKRQNTHTHH
MNPNAMPFLARTYYPNVETNYAAFDQEIELLKPNWYDVCLDLNVNLLVLL
T*
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mRNA from alignment at S-dermatodea_contig9259:3690..4519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9259.17312.1 ID=mRNA_S-dermatodea_contig9259.17312.1|Name=mRNA_S-dermatodea_contig9259.17312.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=830bp|location=Sequence derived from alignment at S-dermatodea_contig9259:3690..4519+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCAAATACTGATAATCTGCCTAAGCGAGGACGCAAGAGACCGATCCGC
AGTTATCTATGAACAAGAACGCTTTCAAAAATGCAGTATGAGCACCGCCA
TGGTATTCGTTACCGCCCTGTGGGGTAGCATTGAAGTTCATGTTTGGCAT
CGGAACATCGATCGACCACAACTTGCAAAAATATCCCAGCCCGGGGTTTG
CTCAAAGCGATCAATACTATTCCTGCTTTGAATCACGCAGGCGGTCTTGA
CTGAGGGTGAACCTGCTCTAAAATAGGATATTCCATACAATTTCCCCACG
GCAGCAGTTCAACGGCCAACGCGGGCGATACACCGGAAGTTCCAAGCCTC
CACGGGTCCTTACCGAGAGCGTCGATGACAATGCTGACCTCCTCCGATTT
GGCCGTGCACATTGAACAATCGCGACCTAAAAATAGCAAAGCCAATAACG
TGCTCGCGTACGAAAACAACGTGGCTTGCTTGTGCCAACCCGCCTCCGAT
CTCGCCCGGGGGAGCGACAGAGTGAAAGCTCGTGTCTTGGCGGGTTTTAT
AAACAAGCCTACTGCGATGTACGGCGTTCTTTGTTTTCCTTCGTGTTGTA
CACGCCGCGCCTCCTTCTACTCTTCTGTGACCCCAGATAGGCCAAACAAG
CGCCAGAACACTCATACCCACCACATGAACCCCAATGCGATGCCCTTCTT
GGCAAGAACGTACTATCCCAACGTCGAGACTAACTATGCGGCATTCGACC
AAGAAATCGAGCTTCTTAAACCCAATTGGTATGACGTTTGCCTGGATTTG
AACGTGAACTTGTTGGTGTTGCTCACTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9259:3690..4519+

>mRNA_S-dermatodea_contig9259.17312.1 ID=mRNA_S-dermatodea_contig9259.17312.1|Name=mRNA_S-dermatodea_contig9259.17312.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at S-dermatodea_contig9259:3690..4519+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACAATGCTGACCTCCTCCGATTTGGCCGTGCACATTGAACAATCGCG
ACCTAAAAATAGCAAAGCCAATAACGTGCTCGCGTACGAAAACAACGTGG
CTTGCTTGTGCCAACCCGCCTCCGATCTCGCCCGGGGGAGCGACAGAGTG
AAAGCTCGTGTCTTGGCGGGTTTTATAAACAAGCCTACTGCGATGTACGG
CGTTCTTTGTTTTCCTTCGTGTTGTACACGCCGCGCCTCCTTCTACTCTT
CTGTGACCCCAGATAGGCCAAACAAGCGCCAGAACACTCATACCCACCAC
ATGAACCCCAATGCGATGCCCTTCTTGGCAAGAACGTACTATCCCAACGT
CGAGACTAACTATGCGGCATTCGACCAAGAAATCGAGCTTCTTAAACCCA
ATTGGTATGACGTTTGCCTGGATTTGAACGTGAACTTGTTGGTGTTGCTC
ACTTGAATGACAATGCTGACCTCCTCCGATTTGGCCGTGCACATTGAACA
ATCGCGACCTAAAAATAGCAAAGCCAATAACGTGCTCGCGTACGAAAACA
ACGTGGCTTGCTTGTGCCAACCCGCCTCCGATCTCGCCCGGGGGAGCGAC
AGAGTGAAAGCTCGTGTCTTGGCGGGTTTTATAAACAAGCCTACTGCGAT
GTACGGCGTTCTTTGTTTTCCTTCGTGTTGTACACGCCGCGCCTCCTTCT
ACTCTTCTGTGACCCCAGATAGGCCAAACAAGCGCCAGAACACTCATACC
CACCACATGAACCCCAATGCGATGCCCTTCTTGGCAAGAACGTACTATCC
CAACGTCGAGACTAACTATGCGGCATTCGACCAAGAAATCGAGCTTCTTA
AACCCAATTGGTATGACGTTTGCCTGGATTTGAACGTGAACTTGTTGGTG
TTGCTCACTTGA
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