mRNA_S-dermatodea_contig92422.17302.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig92422.17302.1
Unique NamemRNA_S-dermatodea_contig92422.17302.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig92422.17302.1 vs. uniprot
Match: A0A4Y1ZP29_ARAVE (gag_pre-integrs domain-containing protein (Fragment) n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y1ZP29_ARAVE)

HSP 1 Score: 58.5 bits (140), Expect = 6.150e-7
Identity = 32/105 (30.48%), Postives = 53/105 (50.48%), Query Frame = 1 
Query:   37 WYFDTGASGNMSYSCNQMTNFRPCN--MLIYVANGVSLPVEGQGNLVVDFQSGSQSVRMTLRDVAYVPKLSYHLLSLRTVVEHGSTYHGDKKGITVHMKSGEDML 345
            W FDT A+ + S   + M N+RP     +     GV+ PVEG G + ++F    +   +TL +V Y PKL  +L+S   + + G  +  +K  + V+ K G  + 
Sbjct:  280 WIFDTAATSHFSCDKDSMLNYRPVKGAEVSVAIGGVTCPVEGTGEVELEFYKNGECETITLLNVLYSPKLKQNLISGSKIDKAGHNFVCNKNILNVYHKDGHKLF 384
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BLAST of mRNA_S-dermatodea_contig92422.17302.1 vs. uniprot
Match: A0A4Y2NTP2_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=9 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2NTP2_ARAVE)

HSP 1 Score: 58.5 bits (140), Expect = 6.890e-7
Identity = 32/105 (30.48%), Postives = 53/105 (50.48%), Query Frame = 1 
Query:   37 WYFDTGASGNMSYSCNQMTNFRPCN--MLIYVANGVSLPVEGQGNLVVDFQSGSQSVRMTLRDVAYVPKLSYHLLSLRTVVEHGSTYHGDKKGITVHMKSGEDML 345
            W FDT A+ + S   + M N+RP     +     GV+ PVEG G + ++F    +   +TL +V Y PKL  +L+S   + + G  +  +K  + V+ K G  + 
Sbjct:  280 WIFDTAATSHFSCDKDSMLNYRPVKGAEVSVAIGGVTCPVEGTGEVELEFYKNGECETITLLNVLYSPKLKQNLISGSKIDKAGHNFVCNKNILNVYHKDGHKLF 384
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BLAST of mRNA_S-dermatodea_contig92422.17302.1 vs. uniprot
Match: A0A6G0WEZ9_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WEZ9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.280e-6
Identity = 24/85 (28.24%), Postives = 46/85 (54.12%), Query Frame = 1 
Query:   28 MEGWYFDTGASGNMSYSCNQMTNFRPCNMLIYVANGVSLPVEGQGNLVVDFQSGSQSVRMTLRDVAYVPKLSYHLLSLRTVVEHG 282
            +  W  D+GAS +           +P    +  ANG+ +P+ G G+++++  + +  + +TL+DV ++P L Y+L SL  V + G
Sbjct:  240 LSAWILDSGASDHFCNDAAWFEELQPFEGTVRAANGIDMPIAGTGSVLLEMNTPTGIIPVTLQDVLFIPNLQYNLFSLSRVTDRG 324
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BLAST of mRNA_S-dermatodea_contig92422.17302.1 vs. uniprot
Match: A0A507D162_9FUNG (DNA-directed DNA polymerase (Fragment) n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507D162_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 6.950e-5
Identity = 32/99 (32.32%), Postives = 52/99 (52.53%), Query Frame = 1 
Query:   37 WYFDTGASGNMSYSCNQMTNFRPCNMLIYVANGVSLPVEGQGNLVVDFQSGSQSVRMTLRDVAYVPKLSYHLLSLRTVVEHGSTYHGDKKGITVHMKSG 333
            WY D GAS + ++    ++N+RP    + +A+  SL ++G G++      G+    +TL +V +VPK+  +LLS         T   DKKGI  H  +G
Sbjct:  156 WYKDAGASRHYTFQREILSNYRPVQDSVQLADRSSLEIQGVGSMTCKTTEGNT---VTLHEVFHVPKMKVNLLS---------TAQLDKKGIEEHCLNG 242
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig92422.17302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A4Y1ZP29_ARAVE6.150e-730.48gag_pre-integrs domain-containing protein (Fragmen... [more]
A0A4Y2NTP2_ARAVE6.890e-730.48Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0WEZ9_9STRA1.280e-628.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A507D162_9FUNG6.950e-532.32DNA-directed DNA polymerase (Fragment) n=1 Tax=Chy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig92422contigS-dermatodea_contig92422:50..562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size486
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925396.0072172-CDS-S-dermatodea_contig92422:49..5351622925396.0072172-CDS-S-dermatodea_contig92422:49..535Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92422 50..535 -
1694079905.163732-CDS-S-dermatodea_contig92422:49..5351694079905.163732-CDS-S-dermatodea_contig92422:49..535Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92422 50..535 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925396.0184078-UTR-S-dermatodea_contig92422:535..5621622925396.0184078-UTR-S-dermatodea_contig92422:535..562Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig92422 536..562 -
1694079905.175121-UTR-S-dermatodea_contig92422:535..5621694079905.175121-UTR-S-dermatodea_contig92422:535..562Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig92422 536..562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig92422.17302.1prot_S-dermatodea_contig92422.17302.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig92422 50..535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig92422.17302.1

>prot_S-dermatodea_contig92422.17302.1 ID=prot_S-dermatodea_contig92422.17302.1|Name=mRNA_S-dermatodea_contig92422.17302.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=162bp
MEGWYFDTGASGNMSYSCNQMTNFRPCNMLIYVANGVSLPVEGQGNLVVD
FQSGSQSVRMTLRDVAYVPKLSYHLLSLRTVVEHGSTYHGDKKGITVHMK
SGEDMLVPVVGKMYIQCGRRVPSDEACAVISPGLLPTTDVDINHYHRATA
HAHPRLLRKTAA
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mRNA from alignment at S-dermatodea_contig92422:50..562-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig92422.17302.1 ID=mRNA_S-dermatodea_contig92422.17302.1|Name=mRNA_S-dermatodea_contig92422.17302.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=513bp|location=Sequence derived from alignment at S-dermatodea_contig92422:50..562- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGGCATTACAGGTTGGGGAAGATAAAATGGAAGGTTGGTATTTTGATAC
AGGTGCTAGCGGCAACATGTCATACAGCTGCAATCAGATGACTAACTTCC
GGCCTTGCAACATGCTCATTTACGTTGCAAATGGCGTATCTCTTCCGGTT
GAAGGCCAAGGCAACTTAGTTGTTGATTTTCAATCTGGCTCGCAATCTGT
GCGTATGACGCTACGCGATGTAGCATACGTACCGAAGCTGAGCTACCATT
TACTCTCACTACGAACGGTCGTGGAGCATGGTAGCACTTACCATGGTGAT
AAGAAAGGGATCACTGTACACATGAAGTCTGGCGAAGACATGCTAGTTCC
CGTTGTGGGGAAGATGTACATCCAGTGCGGCCGAAGGGTTCCTAGTGATG
AGGCCTGTGCCGTAATCTCCCCCGGGCTTTTGCCAACAACCGATGTGGAT
ATAAACCACTACCACCGCGCCACTGCCCACGCCCATCCTCGTTTGCTGAG
GAAAACCGCGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig92422:50..562-

>mRNA_S-dermatodea_contig92422.17302.1 ID=mRNA_S-dermatodea_contig92422.17302.1|Name=mRNA_S-dermatodea_contig92422.17302.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at S-dermatodea_contig92422:50..562- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAGGTTGGTATTTTGATACAGGTGCTAGCGGCAACATGTCATACAG
CTGCAATCAGATGACTAACTTCCGGCCTTGCAACATGCTCATTTACGTTG
CAAATGGCGTATCTCTTCCGGTTGAAGGCCAAGGCAACTTAGTTGTTGAT
TTTCAATCTGGCTCGCAATCTGTGCGTATGACGCTACGCGATGTAGCATA
CGTACCGAAGCTGAGCTACCATTTACTCTCACTACGAACGGTCGTGGAGC
ATGGTAGCACTTACCATGGTGATAAGAAAGGGATCACTGTACACATGAAG
TCTGGCGAAGACATGCTAGTTCCCGTTGTGGGGAAGATGTACATCCAGTG
CGGCCGAAGGGTTCCTAGTGATGAGGCCTGTGCCGTAATCTCCCCCGGGC
TTTTGCCAACAACCGATGTGGATATAAACCACTACCACCGCGCCACTGCC
CACGCCCATCCTCGTTTGCTGAGGAAAACCGCGGCGATGGAAGGTTGGTA
TTTTGATACAGGTGCTAGCGGCAACATGTCATACAGCTGCAATCAGATGA
CTAACTTCCGGCCTTGCAACATGCTCATTTACGTTGCAAATGGCGTATCT
CTTCCGGTTGAAGGCCAAGGCAACTTAGTTGTTGATTTTCAATCTGGCTC
GCAATCTGTGCGTATGACGCTACGCGATGTAGCATACGTACCGAAGCTGA
GCTACCATTTACTCTCACTACGAACGGTCGTGGAGCATGGTAGCACTTAC
CATGGTGATAAGAAAGGGATCACTGTACACATGAAGTCTGGCGAAGACAT
GCTAGTTCCCGTTGTGGGGAAGATGTACATCCAGTGCGGCCGAAGGGTTC
CTAGTGATGAGGCCTGTGCCGTAATCTCCCCCGGGCTTTTGCCAACAACC
GATGTGGATATAAACCACTACCACCGCGCCACTGCCCACGCCCATCCTCG
TTTGCTGAGGAAAACCGCGGCG
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