mRNA_S-dermatodea_contig92403.17301.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig92403.17301.1
Unique NamemRNA_S-dermatodea_contig92403.17301.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig92403.17301.1 vs. uniprot
Match: A0A1A9AHQ1_9APIC (Uncharacterized protein n=7 Tax=cellular organisms TaxID=131567 RepID=A0A1A9AHQ1_9APIC)

HSP 1 Score: 102 bits (255), Expect = 5.730e-27
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSMKRK 147
            YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSMKRK
Sbjct:   27 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSMKRK 75
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BLAST of mRNA_S-dermatodea_contig92403.17301.1 vs. uniprot
Match: UPI001E5E6F4F (hypothetical protein n=2 Tax=Bacteria TaxID=2 RepID=UPI001E5E6F4F)

HSP 1 Score: 102 bits (255), Expect = 6.980e-27
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSMKRK 147
            YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSMKRK
Sbjct:   34 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSMKRK 82
[Close]
BLAST of mRNA_S-dermatodea_contig92403.17301.1 vs. uniprot
Match: A0A1A9AKK5_9APIC (Uncharacterized protein n=3 Tax=cellular organisms TaxID=131567 RepID=A0A1A9AKK5_9APIC)

HSP 1 Score: 99.4 bits (246), Expect = 1.550e-25
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSMKRK 147
            YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPL DSTKRAFQNFSM RK
Sbjct:   32 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLGDSTKRAFQNFSMNRK 80
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BLAST of mRNA_S-dermatodea_contig92403.17301.1 vs. uniprot
Match: A0A1A9AKI0_9APIC (Uncharacterized protein n=1 Tax=Plasmodium ovale wallikeri TaxID=864142 RepID=A0A1A9AKI0_9APIC)

HSP 1 Score: 99.0 bits (245), Expect = 4.850e-25
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSMK 141
            YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSMK
Sbjct:   27 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSMK 73
[Close]
BLAST of mRNA_S-dermatodea_contig92403.17301.1 vs. uniprot
Match: A0A1A9ALP3_9APIC (Uncharacterized protein n=1 Tax=Plasmodium ovale wallikeri TaxID=864142 RepID=A0A1A9ALP3_9APIC)

HSP 1 Score: 96.3 bits (238), Expect = 5.160e-24
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSMKRK 147
            YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKR FQN S+KRK
Sbjct:   27 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRPFQNCSIKRK 75
[Close]
BLAST of mRNA_S-dermatodea_contig92403.17301.1 vs. uniprot
Match: A0A1A9AHW0_9APIC (Uncharacterized protein n=2 Tax=Plasmodium ovale wallikeri TaxID=864142 RepID=A0A1A9AHW0_9APIC)

HSP 1 Score: 96.3 bits (238), Expect = 1.120e-23
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSMKRK 147
            YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKR FQN S+KRK
Sbjct:   27 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRPFQNCSIKRK 75
[Close]
BLAST of mRNA_S-dermatodea_contig92403.17301.1 vs. uniprot
Match: A0A1A9AH03_9APIC (Uncharacterized protein n=1 Tax=Plasmodium ovale wallikeri TaxID=864142 RepID=A0A1A9AH03_9APIC)

HSP 1 Score: 95.1 bits (235), Expect = 2.000e-23
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSMKRK 147
            YKHHKDVSQNAAVCNLYEF LPTKSSKLAKYPLADSTKRAFQN S+KRK
Sbjct:   68 YKHHKDVSQNAAVCNLYEFQLPTKSSKLAKYPLADSTKRAFQNCSIKRK 116
[Close]
BLAST of mRNA_S-dermatodea_contig92403.17301.1 vs. uniprot
Match: A0A1A9AS49_9APIC (Uncharacterized protein n=1 Tax=Plasmodium ovale wallikeri TaxID=864142 RepID=A0A1A9AS49_9APIC)

HSP 1 Score: 94.4 bits (233), Expect = 1.030e-22
Identity = 45/49 (91.84%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSMKRK 147
            YKHHKDVSQNAAVCNLYEFPLP KSSKL KYPLADSTKRAFQN S+KRK
Sbjct:  103 YKHHKDVSQNAAVCNLYEFPLPKKSSKLTKYPLADSTKRAFQNCSIKRK 151
[Close]
BLAST of mRNA_S-dermatodea_contig92403.17301.1 vs. uniprot
Match: UPI0010EF666A (hypothetical protein n=1 Tax=Lactobacillus crispatus TaxID=47770 RepID=UPI0010EF666A)

HSP 1 Score: 90.5 bits (223), Expect = 4.790e-22
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSMK 141
            YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKR FQ  S+K
Sbjct:    4 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRVFQTCSVK 50
[Close]
BLAST of mRNA_S-dermatodea_contig92403.17301.1 vs. uniprot
Match: A0A1A9ALL9_9APIC (PIR Superfamily Protein n=1 Tax=Plasmodium ovale wallikeri TaxID=864142 RepID=A0A1A9ALL9_9APIC)

HSP 1 Score: 90.9 bits (224), Expect = 8.710e-21
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSM 138
            YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKR FQN S+
Sbjct:  166 YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRMFQNCSV 211
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig92403.17301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1A9AHQ1_9APIC5.730e-27100.00Uncharacterized protein n=7 Tax=cellular organisms... [more]
UPI001E5E6F4F6.980e-27100.00hypothetical protein n=2 Tax=Bacteria TaxID=2 RepI... [more]
A0A1A9AKK5_9APIC1.550e-2595.92Uncharacterized protein n=3 Tax=cellular organisms... [more]
A0A1A9AKI0_9APIC4.850e-25100.00Uncharacterized protein n=1 Tax=Plasmodium ovale w... [more]
A0A1A9ALP3_9APIC5.160e-2493.88Uncharacterized protein n=1 Tax=Plasmodium ovale w... [more]
A0A1A9AHW0_9APIC1.120e-2393.88Uncharacterized protein n=2 Tax=Plasmodium ovale w... [more]
A0A1A9AH03_9APIC2.000e-2393.88Uncharacterized protein n=1 Tax=Plasmodium ovale w... [more]
A0A1A9AS49_9APIC1.030e-2291.84Uncharacterized protein n=1 Tax=Plasmodium ovale w... [more]
UPI0010EF666A4.790e-2291.49hypothetical protein n=1 Tax=Lactobacillus crispat... [more]
A0A1A9ALL9_9APIC8.710e-2193.48PIR Superfamily Protein n=1 Tax=Plasmodium ovale w... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig92403contigS-dermatodea_contig92403:72..577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925395.960118-CDS-S-dermatodea_contig92403:71..1851622925395.960118-CDS-S-dermatodea_contig92403:71..185Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92403 72..185 -
1694079905.1424453-CDS-S-dermatodea_contig92403:71..1851694079905.1424453-CDS-S-dermatodea_contig92403:71..185Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92403 72..185 -
1622925395.9714324-CDS-S-dermatodea_contig92403:430..5771622925395.9714324-CDS-S-dermatodea_contig92403:430..577Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92403 431..577 -
1694079905.152575-CDS-S-dermatodea_contig92403:430..5771694079905.152575-CDS-S-dermatodea_contig92403:430..577Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92403 431..577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig92403.17301.1prot_S-dermatodea_contig92403.17301.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig92403 72..577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig92403.17301.1

>prot_S-dermatodea_contig92403.17301.1 ID=prot_S-dermatodea_contig92403.17301.1|Name=mRNA_S-dermatodea_contig92403.17301.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=87bp
YKHHKDVSQNAAVCNLYEFPLPTKSSKLAKYPLADSTKRAFQNFSMKRKT
FPFPKKSSKLSKYPLADSTKRVFQNCSLQRKVQLCQ*
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mRNA from alignment at S-dermatodea_contig92403:72..577-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig92403.17301.1 ID=mRNA_S-dermatodea_contig92403.17301.1|Name=mRNA_S-dermatodea_contig92403.17301.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=506bp|location=Sequence derived from alignment at S-dermatodea_contig92403:72..577- (Saccorhiza dermatodea SderLu1190fm monoicous)
TACAAACATCACAAAGATGTTTCTCAGAACGCTGCAGTCTGCAATTTGTA
TGAATTCCCGCTTCCAACGAAATCCTCAAAACTAGCCAAATATCCACTTG
CAGATTCCACAAAAAGAGCGTTTCAAAACTTCTCTATGAAAAGAAAGGTT
CTACTCCTTTAGTTGAGGACACACATCACGAGTAAGTTTCTGAGAATGCT
TCTGTCTAGTTTTTATGGGAAGATATTTCCTTTTTCACCTTAGGCCGGAA
AGCGCTCCAAATGTCCACTTACACACACTACAAAAAGAGTGTTTCAAACC
TGCTCTGTGAAAGGGAATGTTCAACACTGTGACTTCAATTGAAATATCCC
AAGAAGTTTCTGAAAATGCTTCTGTCTAGAGTTTATCTGAAGACATTCCC
GTTTCCCAAGAAATCCTCAAAGCTATCCAAATATCCTCTTGCAGATTCTA
CAAAAAGAGTGTTTCAAAACTGCTCTTTGCAAAGAAAGGTTCAACTCTGT
CAGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig92403:72..577-

>mRNA_S-dermatodea_contig92403.17301.1 ID=mRNA_S-dermatodea_contig92403.17301.1|Name=mRNA_S-dermatodea_contig92403.17301.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at S-dermatodea_contig92403:72..577- (Saccorhiza dermatodea SderLu1190fm monoicous)
TACAAACATCACAAAGATGTTTCTCAGAACGCTGCAGTCTGCAATTTGTA
TGAATTCCCGCTTCCAACGAAATCCTCAAAACTAGCCAAATATCCACTTG
CAGATTCCACAAAAAGAGCGTTTCAAAACTTCTCTATGAAAAGAAAGTAC
AAACATCACAAAGATGTTTCTCAGAACGCTGCAGTCTGCAATTTGTATGA
ATTCCCGCTTCCAACGAAATCCTCAAAACTAGCCAAATATCCACTTGCAG
ATTCCACAAAAAGAGCGTTTCAAAACTTCTCTATGAAAAGAAAGACATTC
CCGTTTCCCAAGAAATCCTCAAAGCTATCCAAATATCCTCTTGCAGATTC
TACAAAAAGAGTGTTTCAAAACTGCTCTTTGCAAAGAAAGGTTCAACTCT
GTCAGTAGACATTCCCGTTTCCCAAGAAATCCTCAAAGCTATCCAAATAT
CCTCTTGCAGATTCTACAAAAAGAGTGTTTCAAAACTGCTCTTTGCAAAG
AAAGGTTCAACTCTGTCAGTAG
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