mRNA_S-dermatodea_contig9227.17292.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9227.17292.1
Unique NamemRNA_S-dermatodea_contig9227.17292.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9227.17292.1 vs. uniprot
Match: D8LRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRV9_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 6.320e-73
Identity = 125/152 (82.24%), Postives = 139/152 (91.45%), Query Frame = 1 
Query:    1 LQLRGAATLAHHPEYLRHTANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGSNLVLLDWKALESVRGRALAEGVPKGQLSSRQLTAALLEMGGEDDSPLVVFLMDKGSAVLKSRGVCHRLTEELKSESSRVMFLLSTASDQSVLGNVPDG 456
            LQLRGAATLAHHP+YLRHTANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGS L+ LD KA+E+VRG+ALAEG+PK  L+SRQL +ALLE+ GEDDSP +VFLMDKGSAVLKSRG+C RLTEELK+ESSRV+FLLSTASD S+ GN P G
Sbjct:  405 LQLRGAATLAHHPKYLRHTANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGSRLLFLDAKAIEAVRGQALAEGIPKEHLTSRQLASALLELAGEDDSPYLVFLMDKGSAVLKSRGMCQRLTEELKNESSRVLFLLSTASDPSLPGNPPAG 556
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BLAST of mRNA_S-dermatodea_contig9227.17292.1 vs. uniprot
Match: A0A6H5KCX2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX2_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 3.920e-71
Identity = 124/152 (81.58%), Postives = 138/152 (90.79%), Query Frame = 1 
Query:    1 LQLRGAATLAHHPEYLRHTANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGSNLVLLDWKALESVRGRALAEGVPKGQLSSRQLTAALLEMGGEDDSPLVVFLMDKGSAVLKSRGVCHRLTEELKSESSRVMFLLSTASDQSVLGNVPDG 456
            LQLRGAATLAHHP+YLRHTA LPRVTRGVRLVAPEATHSMQEALARSLGHSTGS L+ LD KA+E+VRG+ALAEG+PK  L+SRQL +ALLE+ GEDDSP +VFLMDKGSAVLKSRG+C RLTEELK+ESSRV+FLLSTASD S+ GN P G
Sbjct:  408 LQLRGAATLAHHPKYLRHTAALPRVTRGVRLVAPEATHSMQEALARSLGHSTGSRLLFLDSKAIEAVRGQALAEGIPKEHLTSRQLASALLELAGEDDSPYLVFLMDKGSAVLKSRGMCQRLTEELKNESSRVLFLLSTASDPSLPGNPPAG 559
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9227.17292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRV9_ECTSI6.320e-7382.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCX2_9PHAE3.920e-7181.58AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9227contigS-dermatodea_contig9227:3297..8620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_002630.1
Hectar predicted targeting categoryother localisation
Exons4
Model size501
Cds size501
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9227.17292.1prot_S-dermatodea_contig9227.17292.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9227 3297..8620 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925395.2637389-CDS-S-dermatodea_contig9227:3296..34351622925395.2637389-CDS-S-dermatodea_contig9227:3296..3435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9227 3297..3435 -
1694079904.6761913-CDS-S-dermatodea_contig9227:3296..34351694079904.6761913-CDS-S-dermatodea_contig9227:3296..3435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9227 3297..3435 -
1622925395.2790186-CDS-S-dermatodea_contig9227:4378..45421622925395.2790186-CDS-S-dermatodea_contig9227:4378..4542Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9227 4379..4542 -
1694079904.6880925-CDS-S-dermatodea_contig9227:4378..45421694079904.6880925-CDS-S-dermatodea_contig9227:4378..4542Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9227 4379..4542 -
1622925395.2911036-CDS-S-dermatodea_contig9227:5888..59631622925395.2911036-CDS-S-dermatodea_contig9227:5888..5963Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9227 5889..5963 -
1694079904.6993675-CDS-S-dermatodea_contig9227:5888..59631694079904.6993675-CDS-S-dermatodea_contig9227:5888..5963Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9227 5889..5963 -
1622925395.30551-CDS-S-dermatodea_contig9227:8497..86201622925395.30551-CDS-S-dermatodea_contig9227:8497..8620Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9227 8498..8620 -
1694079904.7103653-CDS-S-dermatodea_contig9227:8497..86201694079904.7103653-CDS-S-dermatodea_contig9227:8497..8620Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9227 8498..8620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9227.17292.1

>prot_S-dermatodea_contig9227.17292.1 ID=prot_S-dermatodea_contig9227.17292.1|Name=mRNA_S-dermatodea_contig9227.17292.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=167bp
LQLRGAATLAHHPEYLRHTANLPRVTRGVRLVAPEATHSMQEALARSLGH
STGSNLVLLDWKALESVRGRALAEGVPKGQLSSRQLTAALLEMGGEDDSP
LVVFLMDKGSAVLKSRGVCHRLTEELKSESSRVMFLLSTASDQSVLGNVP
DGGGGGGGGMQQDGSQQ
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mRNA from alignment at S-dermatodea_contig9227:3297..8620-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9227.17292.1 ID=mRNA_S-dermatodea_contig9227.17292.1|Name=mRNA_S-dermatodea_contig9227.17292.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5324bp|location=Sequence derived from alignment at S-dermatodea_contig9227:3297..8620- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGCAGCTGAGAGGCGCGGCGACTCTCGCCCACCATCCTGAGTACCTCCG
GCACACTGCTAACCTTCCCAGGGTGACGCGTGGGGTGCGGCTCGTGGCGC
CGGAAGCGACGCACAGCATGCAGGTAATTCGTTTGCTGGTTGCGGTTAGT
GGTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGCCTAGACAGAACCATGGT
AAATTAACTATCTCTGGGATAATCAAACCGGCAGAAAGGTGTACAGTATG
CACGATATAATCGAATAACGAGTTGCCTTACCTAAGGACGGACCCAAAAG
CCGAGATCAAAACGACGGAAGGGGTAGAGCAGTATACACGAGACAATCGA
ATCAGAGGTTTTCTTACACGAGGACCAAGCTACATCAGAGTCTGACATAC
ATACGCACCTGAAAGCAGAGCCGATTACATCGGTTTGCGTGTTTGCATAG
AGCTTTACCTGAGAGTAGAGTCGATTACATCAGTTCGCACATACATGAGA
GCCAATGGATTTAGCTGCATTCATGAGAGCTTGTCTGAATCACCCCCTCG
GTGTGGATCACGGCAGAATTGGCGACTTCACACTAAATAAGAATGTGGTG
GTGGTGATGCTATTGGATGGTGGTAATTATTTTTTATTTTGCTGTTGTTG
TTGTTGTTGTGAATACATAACACACACAAGACACTTTTTATAGTGGCTAT
AATACAGCGCGCCCCGTGGTTGAACTGGTTGAACTGGTACACCGACTGCC
AATAAGGCGGAGGGCCCCGGGTTCGAATCAGGGCAGAGTCGATATTTATT
TATTTAATCCACCTCCGGCGCGGAAAGCGCGACGGCGTGAGTTAAGCAAA
ATTCGGGAAATCGGCGAGCTGCGGGAGTGCCGAACCCAATGAAAATCGCG
ATAGAAATCAAAGGTGTGAACATACCGGGGACATAAGAGAGATGGGGTGA
TCCCTTGTGGCCACAGACGGACCTCGGAAAAGCAAGGCTATCATATGTAT
GCGAAAAAATAAAAATAAAAATCCGTTAAAACCGCGGAAGAGAGCTGCGG
GAGTGCCGAACGAACCCAATGCGTTCGCGATGTAACCCTACGGTAAGAAC
ATCACATACCGGGGATACTTGGAAGAGAGAGGGGCTGATTCATTGTGACC
ACAGACGGACCTCGGGCAAGCCGGTATAATATATTAATACTAATATTAGT
GTGTGTGCAAAAACAAAAAGTGTACATGTATACAAGTATATACACAAAGG
TCTTCGCTGGAGGGGGCTAACGCCCCCTCAGCTTCGCGCAAGGCAATCGA
GGATAGCGTGTTCGACGTCGAGGTTCGGCATCCAAGGCGCGAAGGCGTGC
TTCCTTGTAATAAATCACTATATTTATTGATTGATAGCGCTTCGGACATT
TTTCAATAGCGATTTGGAGTGACCAGCCCACACTAAACTCCTACAAGTAT
ACGTTATGGGGCCGATTGTTTTAGGCCGATTTGGTACACTAAACTCCTAT
ATGATTTGAGGCCCACAGCAGCCAGCAGCGCCCTACGCCTGCCGTGGGTC
GCCACACCGTATCCTCCAAGCCCAATCCACGTGTTGTCGTCCTGCGAACG
CACACCTCACGGGCGTTGCCGTGCGCTATCTACTAGTATTAATAGATACA
ACTGATCGGCCGTTGTATTAATACTTCAGTAATAGTAATAAAATATGTGG
AAAGTGTGAAAACCGATGAATCCAAATCAACACTCGTGTATGATATTTTA
TTTGTTAATGGATCGCTCTTTGCCCGTTTTTTTGTTTAACTTTAATATTG
GAAGCACGGAGGATGTCAAGCCGTACTGCACTAGGGCTGAACGGACTGTG
ATGTGGAACACCCGACTCTTCAAAACCTTCAAAATGTGACACACGAGTGA
ACGATACTGTAGTACTGTATAATAGTGTTATTATTGAGAATAAGCACCAA
ACAGCTATTCATATCATAACAACAATTGACAAAAATACCATAGCAACCTC
CAATACACCTGCCCACCTACACTATTACCTTAACACTTTTGGTACTAGCC
CCCTGTTTGGAGCGCCGGTTATCACGTAATGAGGCGTGCTTGGAGCGGAA
TCCTGGGGACCGCCATGGGTTATGACGCAGGAATGACAGAGAACGGAGCG
TAAGGGAACGGGAGCTGTAGCTGTCGACTGGCATCGAGTAGTTTTTGGTC
GTTTCGGAGAGCCCTATTAATACTAATTTACTACTTGTATGGTTAATAGG
TCCCCTCCCTGCGCGTTTTGGTTTTTATCTTTGTTACATTTATTACTTAA
TACCACTCTTACCGGTTTTTACTTTTAGTAGCGATTTTAGGCAACGATGT
TGTGTCACCGGAATCCTATAGGAAAAAGTGATGCTAAACAACTTGGTGTT
TGTGTTGAGAGCCAAGTGTTGAAAATAGTAAGAATTTTTCTCCTCACGGT
TGTAGCCTAAACTACCTATTCATACCTATTAATACTATATATTATTAGTT
ACCATGGAAGACAACAGCACAAAGTTCATTAAAATGGGACACTGGTGTTG
ATGCCCTCTTTGCTCCCGCCCCCCTCTCGCCCCCCCCCCTGCTCCCCTTT
TCTTCCCGTCTGTGATGTGTATTGGATTGTTCAATGGCTGCATCGTATTT
GTTTCAGGAGGCGCTGGCGAGGTCTCTGGGGCACAGCACCGGGAGCAACC
TGGTGTTGCTGGATTGGAAGGCTTTGGAGTCGGTGAGAAGGCTCGCCTCC
TTGCCTCTCGACCTCGTGTCATGTTTATGTCACGTTTATGTCACGTTTAT
GTCACGTGTATGTCATGTCATGCCATCACACCGTCGCTGTTGGTGTTGTT
GTTGGTGTTGGTATTGGTGTTATGTTTGGTGTTGGTGTTGTTGTTGGTGG
TGTTGGTGGTTGGTGTTGGTGTTGTTGGTGGGGTTGGTGCTGTTGTTGGT
GTTGGTGGTGGTGGGGTTGGTGCTGTTGTTGGTGGGGTTGGTGCTGTTGT
TAGTGGGGTTGGTGCTGTTGTTGTTGGTGGTGGTGGTGTTGGTGTTGGTG
TTGGTGTTGGTGTTGGTGTTGCTGGCGGTGGTGTTGGTGGTGGTGGGGTT
GGTGGTGGTGTTGGTGTTATTGTTGGTGGTGTTGTTGTTGGTGGGGTTGG
TTGTGTTGTTGTTGTTGGTGGTGGTGGTGCTGTTGTTTGTTCGATTTTTG
TTTGTTTTTGCTCCCGCATTATACATCTTTTAGCTGATCGTATTATAGCA
CCTGAAAAGCTCCCGTCAAAATCCCTGCCGCGGTCATAATTTGCGCGTAT
AACATGATACACAATGCCGGATGGCGTGTTTGAGGCGTGACCGGCTGTAT
AGACACAATACATGCTGTATGGTACTGGTATCATACATTTGATCGTAGTA
GAGATGTTCACGGCACTTGTGAGAAGAAAAGAAAAGAAAAGAAAAGAGAG
AAAATAACGGGGTAGCGCTCGCGCGCGGGTGAGTGCTGGCTGGCTGGCTT
TACTAAACAATACGCTATCATAATACAAAATAAAAAAGAAACCAGATTGG
AAAAATGGACCACAATGACTATTATATTAGTACCAATGAACCACGAGCAA
TAAGCAATGTTGTAGCAAAAGCGTACCAGTACCGACTGACCAAGGGATCG
AAAACTGAACAAAACCACGATTACGGGCGAAGAACAAGTTGTTCTTTTGG
GTAGAACGAATGAACAAAACGATCGAAAAACGGGGGGGGGGGGGGGGGGG
GGGAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAA
AAAAAAACAAAACAAACAACAAAAAAAACAGCCAAACAGAAAAAAANNNN
NNNNNNTGTGAAGTAGAATAGGAAATGGTGGGTGTGTGGGGGGAGGAGTG
TGAATGTGATGTACGAAAGTAAACGAACCAAAAATGGAGAAGAAAGAGAG
GAAGAACAAAAAAAAAGGGAACCAAGGTAAAAATAAAAACGATAACAAAA
TGGACAAAAATGCATCGCAAGTGAACAAAAAAACGCCCACCCACCCACCC
ACCCACCCACCCACCCTTTCTCGGACAGGTGCGAGGCAGGGCGCTCGCGG
AAGGAGTGCCGAAGGGCCAGCTCTCTTCGCGACAGCTGACGGCCGCGCTG
CTGGAAATGGGTGGAGAAGACGATTCCCCCCTCGTGGTGTTCCTCATGGA
CAAGGGTAGCGCCGTGCTCAAGAGCAGGGGGGTATGCCACCGGTGAGATT
AAATACTACGTAATACTATACTTGTACGAAGTCCTGCTATCTCACGTTTC
CTTTTTTTTCTCTCCTGTTTTTTTGTTTTTTATTTCTTCGCTTGCTCTTT
TATCTGACCACGAGCGAGAGCGGGATCGGCAACTAAAACCATTGGTTGGC
CGGTCGGTTGGGTGAGAATCAACCAATAAAATAAAATAAAATAAAATATA
ATCAAATCAAATCAAATCAACTCGATCAAGTAGAAATCACCCCCAATCCG
CGACCCCCCGTGAAAACTGAGTAAATTGTTTCAAAAATATGGAGCGAGGC
TCACGTTGGGGTCCCACGTTTTTAAGAGGGAAATACGGTCCAAGCTATGT
TATACACACCTATTAATATGTTATTCACACCTATGGAGGCTTACGCTACT
CAATTTGCCGCGGTCATGTATGATGGATGCTGCAGGATATTGGTATAATA
CAAGTGTATTTTGTCTTGGGGCGACATCCTGGTAAGTAACCCCTCCTCAA
ACAAGCAAATAAAAGTAAAACACAGAGATAGCGAGCGCTGGAGTCCAATC
TTCGCTGTGGAGAGGAAATATGGACCATGCTAACTATCTCAGTGCAGGCT
TGCGTTACTTGACCCTTTTGGGACTATGGCTGTTTTCGGGTAACTGTTCG
CTTTTATTACTTCCCCTTTTGAGACTAAGCCTGGGGACGAAGCCTGTTTT
CGATAACTGTTTGTTGGCTACCATAATAGCAAACAGTTACTCGAAAACAG
CCTTAGTTCCAAAACAAAAGGGTATCTAATAATTGCAAACAGTTACCTGA
AAACAGCCTTAGTCCCAAAAGAGTTAAGATGCCATGGTTTGATTTTGTAT
GTCATGTATGATGCTGTTTTTGCCCCCAACCCCCAATCCCCACGCCCGAT
CCCCTTTCTCTCTACTCCCCCCTGGACGTTGAAAGGTTGACGGAAGAGCT
CAAGAGCGAGTCGTCTCGAGTGATGTTCCTTCTCTCCACCGCTAGCGACC
AGTCCGTGCTGGGGAACGTCCCCGACGGTGGCGGCGGCGGCGGCGGCGGG
ATGCAGCAAGACGGTTCGCAGCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9227:3297..8620-

>mRNA_S-dermatodea_contig9227.17292.1 ID=mRNA_S-dermatodea_contig9227.17292.1|Name=mRNA_S-dermatodea_contig9227.17292.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at S-dermatodea_contig9227:3297..8620- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGCAGCTGAGAGGCGCGGCGACTCTCGCCCACCATCCTGAGTACCTCCG
GCACACTGCTAACCTTCCCAGGGTGACGCGTGGGGTGCGGCTCGTGGCGC
CGGAAGCGACGCACAGCATGCAGTTGCAGCTGAGAGGCGCGGCGACTCTC
GCCCACCATCCTGAGTACCTCCGGCACACTGCTAACCTTCCCAGGGTGAC
GCGTGGGGTGCGGCTCGTGGCGCCGGAAGCGACGCACAGCATGCAGGAGG
CGCTGGCGAGGTCTCTGGGGCACAGCACCGGGAGCAACCTGGTGTTGCTG
GATTGGAAGGCTTTGGAGTCGGAGGCGCTGGCGAGGTCTCTGGGGCACAG
CACCGGGAGCAACCTGGTGTTGCTGGATTGGAAGGCTTTGGAGTCGGTGC
GAGGCAGGGCGCTCGCGGAAGGAGTGCCGAAGGGCCAGCTCTCTTCGCGA
CAGCTGACGGCCGCGCTGCTGGAAATGGGTGGAGAAGACGATTCCCCCCT
CGTGGTGTTCCTCATGGACAAGGGTAGCGCCGTGCTCAAGAGCAGGGGGG
TATGCCACCGGTGCGAGGCAGGGCGCTCGCGGAAGGAGTGCCGAAGGGCC
AGCTCTCTTCGCGACAGCTGACGGCCGCGCTGCTGGAAATGGGTGGAGAA
GACGATTCCCCCCTCGTGGTGTTCCTCATGGACAAGGGTAGCGCCGTGCT
CAAGAGCAGGGGGGTATGCCACCGGTTGACGGAAGAGCTCAAGAGCGAGT
CGTCTCGAGTGATGTTCCTTCTCTCCACCGCTAGCGACCAGTCCGTGCTG
GGGAACGTCCCCGACGGTGGCGGCGGCGGCGGCGGCGGGATGCAGCAAGA
CGGTTCGCAGCAGGTTGACGGAAGAGCTCAAGAGCGAGTCGTCTCGAGTG
ATGTTCCTTCTCTCCACCGCTAGCGACCAGTCCGTGCTGGGGAACGTCCC
CGACGGTGGCGGCGGCGGCGGCGGCGGGATGCAGCAAGACGGTTCGCAGC
AG
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