mRNA_S-dermatodea_contig92239.17288.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig92239.17288.1
Unique NamemRNA_S-dermatodea_contig92239.17288.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig92239.17288.1 vs. uniprot
Match: A0A6H5L0A8_9PHAE (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A8_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 4.830e-37
Identity = 71/118 (60.17%), Postives = 87/118 (73.73%), Query Frame = 1 
Query:    1 FGEKQQVLKRMVQGFFSVAFKASEARQVVDASASIVINACRARLRFTPLAIPLAQKGPYQSSTGRKVTVNMTPRKKEGLGRFLPSLRPGKATAEVTYLSNRWRICRVGGVTVAFRKSG 354
            +    ++L R+++G FS  FK S+ RQVVD  AS V+NACRARLR TPLA+ +A+KG Y+ +  RKV V M P KK  L R LPSLR GK  AEVTYLS++WRICR GGVT+AFRKSG
Sbjct:  335 YSSSSRLLGRVIKGLFSGFFKTSDRRQVVDTGASSVLNACRARLRLTPLALRVAKKGSYRKTAERKVLVEMPPTKKGLLRRVLPSLRAGKVEAEVTYLSDKWRICRAGGVTLAFRKSG 452
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BLAST of mRNA_S-dermatodea_contig92239.17288.1 vs. uniprot
Match: D8LNG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG7_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 5.500e-14
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:  211 MTPRKKEGLGRFLPSLRPGKATAEVTYLSNRWRICRVGGVTVAFRKSG 354
            M P KK  L R LPSLR GK  AEVTYLS++WR+CR GGVTVAFRK+G
Sbjct:    1 MPPTKKGLLRRVLPSLRAGKVEAEVTYLSDKWRVCRAGGVTVAFRKNG 48
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig92239.17288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0A8_9PHAE4.830e-3760.17PAP_fibrillin domain-containing protein n=1 Tax=Ec... [more]
D8LNG7_ECTSI5.500e-1470.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig92239contigS-dermatodea_contig92239:70..429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_003920.1
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size330
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925395.0040202-CDS-S-dermatodea_contig92239:69..3991622925395.0040202-CDS-S-dermatodea_contig92239:69..399Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92239 70..399 -
1694079904.5135868-CDS-S-dermatodea_contig92239:69..3991694079904.5135868-CDS-S-dermatodea_contig92239:69..399Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92239 70..399 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925395.0151143-UTR-S-dermatodea_contig92239:399..4291622925395.0151143-UTR-S-dermatodea_contig92239:399..429Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig92239 400..429 -
1694079904.5266962-UTR-S-dermatodea_contig92239:399..4291694079904.5266962-UTR-S-dermatodea_contig92239:399..429Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig92239 400..429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig92239.17288.1prot_S-dermatodea_contig92239.17288.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig92239 70..399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig92239.17288.1

>prot_S-dermatodea_contig92239.17288.1 ID=prot_S-dermatodea_contig92239.17288.1|Name=mRNA_S-dermatodea_contig92239.17288.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp
MVQGFFSVAFKASEARQVVDASASIVINACRARLRFTPLAIPLAQKGPYQ
SSTGRKVTVNMTPRKKEGLGRFLPSLRPGKATAEVTYLSNRWRICRVGGV
TVAFRKSGN*
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mRNA from alignment at S-dermatodea_contig92239:70..429-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig92239.17288.1 ID=mRNA_S-dermatodea_contig92239.17288.1|Name=mRNA_S-dermatodea_contig92239.17288.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at S-dermatodea_contig92239:70..429- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCGGCGAAAAACAACAGGTGTTGAAGAGAATGGTCCAGGGTTTCTTCTC
GGTCGCTTTCAAGGCCTCCGAGGCCCGACAGGTGGTGGATGCGTCCGCCT
CAATCGTGATCAACGCGTGCCGCGCGCGGCTTCGGTTCACCCCGCTGGCA
ATCCCTCTCGCACAGAAGGGCCCCTACCAATCGTCAACCGGCCGAAAAGT
CACCGTGAACATGACCCCAAGGAAGAAGGAAGGCCTCGGCCGATTCCTCC
CCTCGCTGCGACCCGGCAAGGCAACCGCCGAAGTCACGTACCTGTCCAAC
CGCTGGCGAATCTGCCGCGTGGGGGGCGTGACCGTCGCCTTCCGCAAGAG
CGGGAACTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig92239:70..429-

>mRNA_S-dermatodea_contig92239.17288.1 ID=mRNA_S-dermatodea_contig92239.17288.1|Name=mRNA_S-dermatodea_contig92239.17288.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig92239:70..429- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTCCAGGGTTTCTTCTCGGTCGCTTTCAAGGCCTCCGAGGCCCGACA
GGTGGTGGATGCGTCCGCCTCAATCGTGATCAACGCGTGCCGCGCGCGGC
TTCGGTTCACCCCGCTGGCAATCCCTCTCGCACAGAAGGGCCCCTACCAA
TCGTCAACCGGCCGAAAAGTCACCGTGAACATGACCCCAAGGAAGAAGGA
AGGCCTCGGCCGATTCCTCCCCTCGCTGCGACCCGGCAAGGCAACCGCCG
AAGTCACGTACCTGTCCAACCGCTGGCGAATCTGCCGCGTGGGGGGCGTG
ACCGTCGCCTTCCGCAAGAGCGGGAACTGAATGGTCCAGGGTTTCTTCTC
GGTCGCTTTCAAGGCCTCCGAGGCCCGACAGGTGGTGGATGCGTCCGCCT
CAATCGTGATCAACGCGTGCCGCGCGCGGCTTCGGTTCACCCCGCTGGCA
ATCCCTCTCGCACAGAAGGGCCCCTACCAATCGTCAACCGGCCGAAAAGT
CACCGTGAACATGACCCCAAGGAAGAAGGAAGGCCTCGGCCGATTCCTCC
CCTCGCTGCGACCCGGCAAGGCAACCGCCGAAGTCACGTACCTGTCCAAC
CGCTGGCGAATCTGCCGCGTGGGGGGCGTGACCGTCGCCTTCCGCAAGAG
CGGGAACTGA
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